BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484399

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G26360.1 | Symbols:  | Ribosomal protein S21 family protein ...   424    6e-118


> AT3G26360.1 | Symbols:  | Ribosomal protein S21 family protein 
| chr3:9655657-9656545 REVERSE LENGTH=712
Length=712

 Score =  424 bits (229),  Expect = 6e-118
 Identities = 288/315 (91%), Gaps = 10/315 (3%)
 Strand=Plus/Plus

Query  1    ATGAACACGATAGCGAAGCGAGTTACAGGATTTGTGA--C-T-CG-G----AACCACCAG  51
            |||||||||||||||||||||||||| || || ||||  | | || |    ||||| |||
Sbjct  101  ATGAACACGATAGCGAAGCGAGTTACGGGGTTGGTGACTCGTCCGAGTCTAAACCAGCAG  160

Query  52   TTGCAGCAGGAGCGAGGGATAAGAGTGAAGGTGTTTTCCAATGATCTGGACAAAGCATTG  111
            |||||||| |||||||||||||||||||||||||| ||||||||| | ||||| ||| ||
Sbjct  161  TTGCAGCAAGAGCGAGGGATAAGAGTGAAGGTGTTCTCCAATGATTTAGACAAGGCACTG  220

Query  112  ACGATTTTGCAGAAGAAGATGCAATCTAGTGGAATGGAGAGACTTATCAAAGGGACTCAG  171
            |||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct  221  ACGATTTTGCAGAAGAAGATGCAATCGAGTGGAATGGAGAGGCTGATCAAAGGGACTCAG  280

Query  172  ACTCATCACATTAAGAATTCAGAGAAGAAGGTTCTCGCTAGGAAGAATCTTGAACGCAGA  231
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  281  ACTCATCACATTAAGAATTCGGAGAAGAAGGTTCTCGCTAGGAAGAATCTTGAACGCAGA  340

Query  232  ATCAAATCTATTGACTTTGCTCGCAAACTTCAATCAATCCTCATCAAGAAAGTCAGGAGG  291
            |||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct  341  ATCAAATCCATTGACTTTGCTCGAAAACTCCAATCAATCCTCATCAAGAAAGTCAG-AGG  399

Query  292  TTTATGAGAGCTGAG  306
            |||||||||||||||
Sbjct  400  TTTATGAGAGCTGAG  414


 Score = 58.4 bits (31),  Expect = 7e-08
 Identities = 31/31 (100%), Gaps = 0/31 (0%)
 Strand=Plus/Plus

Query  305  AGTTGTTTACTCTATGGCTTCTCTTTCGTAA  335
            |||||||||||||||||||||||||||||||
Sbjct  535  AGTTGTTTACTCTATGGCTTCTCTTTCGTAA  565



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26171990587


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5