BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484400
Length=1952
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26370.1 | Symbols: | O-fucosyltransferase family protein |... 3081 0.0
> AT3G26370.1 | Symbols: | O-fucosyltransferase family protein
| chr3:9656744-9659935 FORWARD LENGTH=2010
Length=2010
Score = 3081 bits (1668), Expect = 0.0
Identities = 1848/1932 (96%), Gaps = 24/1932 (1%)
Strand=Plus/Plus
Query 40 agaagaagaaaaggaagagagaaTATAGATATTAAGCTGGCGACTTTTAGTCCGAGGCGA 99
||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 80 AGAGGAAGAAAAGGAAGAGAGGATATAGAAATTAAGCTGGCGACTTTTAGTCCGAGGCGA 139
Query 100 GCAATGGCTGAGTTACGGCACTCGAGCTCTCTCGGTAGCCGATCTTCTTCTTCTCCGTTA 159
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GCAATGGCAGAGTTACGGCACTCGAGCTCTCTCGGTAGCCGATCTTCTTCTTCTCCGTTA 199
Query 160 CGT---GCCGGAGATGAGGACTCTTCATCGCCTCACGTACACGATCACTCACCTAACGGC 216
||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 200 CGTGCCGCCGGAGATGAGGATTCTTCATCGCCTCATGTACACGATCACTCTCCTAACGGC 259
Query 217 GGAGACGACGAAGATGGTCGACCACGTCATCCTTCAAGAGATCGAGACCGTCCGATCTGG 276
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 260 GGAGACGACGAAGATGGTCGCCCACGTCATCCTTCTAGAGATCGAGACCGTCCGATCTGG 319
Query 277 TTTCACTCTTTGTTTCCTTTCTTCGGTGATGATCCTAGGGTTTCTCCTCAGAAGAATAAA 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TTTCACTCTTTGTTTCCTTTCTTCGGTGATGATCCTAGGGTTTCTCCTCAGAAGAATAAA 379
Query 337 ATCTCGCTTCTATTGATTTTGATTCTCGCTATTGCTAGCTTGATCTCAGTTTATGGGATT 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 ATCTCGCTTCTATTGATTTTGATTCTCGCTATTGCTAGCTTGATCTCAGTTTATGGGATT 439
Query 397 ATTAATCACTTGAATGCTCCATATTTGTGTAAAAAAGATGGGATTGTGCTTAACTGTCCT 456
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 440 ATTAATCACTTGAATGCTCCTTATTTATGTAAAAAAGATGGGATTGTGCTAAACTGTCCT 499
Query 457 CATGTAAAAGAGTCTCCTTCTCCATGGGAAAATCCTTTATCTGCAACAACTTCTTGGAAG 516
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 500 CATGTAAAAGAGTCACCTTCTCCTTGGGAGAATCCTTTATCTGCAACAACTTCTTGGAAG 559
Query 517 CCTTGTGCTGAGCGGCGGGTTGGTGGAATCTCAGATCTTCCTCCTGAGAACGAAACAAAT 576
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 560 CCTTGTGCTGAGCGGCGGATTGGTGGAATCTCAGATCTTCCTCCTGAGAATGAAACAAAT 619
Query 577 GGCTATGTATTCATTCATGCTGAAGGTGGTTTGAATCAGCAGCGAATTGCTATCTGCAAT 636
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 GGCTATGTATTCATTCATGCTGAAGGTGGTTTGAATCAGCAGCGAATTGCTATCTGCAAC 679
Query 637 GCAGTAGCTGTTGCTAAGATTATGAATGCAACACTGATTCTACCAGTACTGAAGCAGGAC 696
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 GCAGTAGCTGTTGCCAAGATTATGAATGCAACACTGATTCTACCAGTACTGAAGCAGGAC 739
Query 697 CAAATATGGAAAGACACAACAAAATTTGAAGACATTTTTGATGTAGATCATTTCATTGAT 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 CAAATATGGAAAGACACAACAAAATTTGAAGACATTTTTGATGTAGATCATTTCATTGAT 799
Query 757 TACTTGAAGGATGATGTCCGAATTGTTCGAGACATACCTGACTGGTTCACTGACAAAGCA 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 TACTTGAAGGATGATGTCCGAATTGTTCGAGACATACCTGACTGGTTCACTGACAAAGCA 859
Query 817 GAGCTATTCTCCAGCATAAGAAGAACAGTCAAAAACATTCCCAAATATGCAGCAGCCCAA 876
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 GAGCTATTCTCTAGTATAAGAAGAACAGTCAAAAACATTCCCAAATATGCAGCAGCCCAA 919
Query 877 TTTTATATAGACAATGTTTTACCTCGTATAAAGGAGAAGAAGATAATGGCCTTGAAGCCT 936
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 920 TTTTATATTGACAATGTTTTACCTCGGATAAAGGAGAAGAAGATAATGGCCTTGAAGCCT 979
Query 937 TTTGTCGATCGACTTGGGTACGACAATGTACCTCAAGAAATCAACAGATTACGATGCCGT 996
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 980 TTTGTCGATCGACTTGGGTATGACAATGTACCTCAAGAAATCAACAGATTACGATGCCGT 1039
Query 997 GTAAATTATCATGCTCTCAAATTTCTCCCAGAGATAGAGCAGATGGCTGACTCACTTGTT 1056
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1040 GTAAATTATCATGCTCTCAAATTTCTTCCAGAGATAGAGCAGATGGCTGATTCACTTGTT 1099
Query 1057 TCTAGAATGAGAAATCGCACTGGCAATCCGAATCCGTATATGGCTCTTCATCTTAGATTC 1116
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 1100 TCTAGAATGAGAAATCGCACTGGAAATCCAAATCCATATATGGCTCTTCATCTTAGATTC 1159
Query 1117 GAGAAAGGAATGGTTGGTTTATCGTTCTGTGATTTCGTGGGGACAAGGGAAGAGAAAGTT 1176
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1160 GAGAAAGGAATGGTTGGTCTATCGTTCTGTGATTTTGTGGGGACAAGGGAAGAGAAAGTT 1219
Query 1177 AAAATGGCAGAATACAGACAAAAGGAATGGCCTCGGCGTTTCAAGAATGGTTCCCATCTC 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 AAAATGGCAGAATACAGACAAAAGGAATGGCCTCGGCGTTTCAAGAATGGTTCCCATCTC 1279
Query 1237 TGGCAGCTCGCTTTGCAAAAGCGCAAAGAAGGCCGATGCCCTCTTGAGCCAGGAGAAGTT 1296
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1280 TGGCAGCTCGCCTTGCAGAAGCGCAAAGAAGGTCGATGCCCTCTTGAGCCAGGAGAAGTT 1339
Query 1297 GCTGTGATCCTACGGGCAATGGGTTATCCAAAAGAAACACAAATCTATGTAGCATCTGGT 1356
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1340 GCTGTGATCCTACGTGCAATGGGCTATCCAAAAGAAACACAAATCTATGTTGCATCTGGT 1399
Query 1357 CAAGTCTATGGCGGCCAAAACCGTATGGCTCCACTAAGAAACATGTTCCCAAATTTGGTA 1416
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 CAAGTCTATGGCGGTCAAAACCGTATGGCTCCACTAAGAAACATGTTCCCAAATTTGGTA 1459
Query 1417 ACAAAGGAGGATCTAGCAGGCAAAGAGGAACTAACAACTTTTAGAAAACACGTAACAAGC 1476
|||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1460 ACAAAGGAGGATTTAGCAGGCAAAGAGGAACTAACAACGTTTAGAAAACACGTTACAAGT 1519
Query 1477 CTCGCGGCTCTAGATTTCTTGGTCTGCTTGAAATCAGATGTATTTGTGATGACACACGGT 1536
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1520 CTTGCGGCTCTAGATTTCTTGGTGTGCTTGAAATCAGATGTATTTGTGATGACACACGGT 1579
Query 1537 GGAAACTTTGCAAAACTGATCATCGGAGCACGTAGATATATGGGTCATCGGCAAAAATCA 1596
||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||
Sbjct 1580 GGAAACTTTGCAAAACTGATCATCGGAGCGCGTAGATATATGGGGCATCGCCAGAAATCA 1639
Query 1597 ATCAAACCGGATAAAGGTTTGATGTCGAAATCATTCGGGGATCCTTACATGGGATGGGCA 1656
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1640 ATCAAACCGGATAAAGGGTTGATGTCGAAATCATTTGGGGATCCTTACATGGGATGGGCA 1699
Query 1657 ACTTTTGTGGAAGATGTAGTTGTAACCCATCAAACACGAACCGGTTTACCCGAAGAAACT 1716
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1700 ACTTTTGTGGAAGATGTAGTTGTAACCCATCAAACACGAACCGGTTTACCTGAAGAAACT 1759
Query 1717 TTCCCTAACTATGATCTTTGGGAAAATCCTCTCACTCCATGCATGTGTAAAGCTTGATGA 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1760 TTCCCTAACTATGATCTTTGGGAAAATCCTCTCACTCCATGCATGTGTAAAGCTTGATGA 1819
Query 1777 TGCTGCTTTTGTTTCGTCTTGGATTTTGTCTGATGAGGAGCTACAAAACTATAGAGATTC 1836
|| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1820 TGATGCTTTTGTTTGGTCTTGGATTTTGTCTGATGAGGAGCAACAAA-CTATAGAGATTC 1878
Query 1837 GTAGtttt-tt-ttCTT-TAA--CTT------CC----AAATCTTTGAAGTCTTCTTCAC 1881
|||||||| || ||||| | ||| || ||||||||||||||||| |
Sbjct 1879 GTAGTTTTCTTCTTCTTCTTCTTCTTTTTTGACCTTTCAAATCTTTGAAGTCTTCAT--- 1935
Query 1882 TTACCATCTTTGTAATCATTTTGACATTATGTAAAGTTCCTAGTGAAGaaaaaaaaGGtt 1941
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 1936 TTACCATCTTTGTAATCATTTTGATATTATGTAAAGTTCCTAGTGATGAAAAAAAAG-TT 1994
Query 1942 tttttttt-tAT 1952
| |||||| |||
Sbjct 1995 TCTTTTTTATAT 2006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96686249670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5