BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484402
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26400.1 | Symbols: EIF4B1 | eukaryotic translation initiati... 2540 0.0
AT1G13020.1 | Symbols: EIF4B2 | eukaryotic initiation factor 4B... 566 3e-160
> AT3G26400.1 | Symbols: EIF4B1 | eukaryotic translation initiation
factor 4B1 | chr3:9666616-9669162 FORWARD LENGTH=1680
Length=1680
Score = 2540 bits (1375), Expect = 0.0
Identities = 1593/1692 (94%), Gaps = 39/1692 (2%)
Strand=Plus/Plus
Query 1 ATGGCGAAACCTTGGGGTGGAATTGGAATTGGGGCTTGGGCTGATGAAGCAGAGCGTGCC 60
||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGTCGAAAGCTTGGGGTGGAATTGGAATTGGAGCTTGGGCTGATGAAGCAGAGCGTGCC 60
Query 61 GATGAAGAGCAAGCGGCGGAAGCTACTGCTGCGACGGCGGATACACAGAGTTTTCCTAGC 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATGAAGAACAAGCGGCGGAAGCTACTGCTGCGACGGCGGATACACAGAGTTTTCCTAGC 120
Query 121 CTGAGAGA-G--GCTGCTGCGACTGCTACTAATGCTAAGTCTAGGAAGATGAAGAAGATG 177
|||||||| | |||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct 121 CTGAGAGAGGCTGCTGCTGCGACTGCGACTAGTGGTAAGTCTAGGAAGATGAAGAAGATG 180
Query 178 AGTTTATCTGAGTTTACTACAGGTTCTTATACAGCACCTGGCGGTAGAAACTCTGTTGGA 237
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 181 AGTTTATCTGAGTTTACTACAGGTGCTTATACAGCACCTGGAGGTAGAAACTCTGTTGGA 240
Query 238 TTGACTCAGCAAGAGATTCTTCAATTACCTACTGGTCCTAGACAACGTTCTGAGGAGGAA 297
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 TTGACTCAGCAAGAGATTCTTCAATTACCTACTGGTCCTAGACAACGTTCCGAGGAGGAA 300
Query 298 ATGCAACCTGGTCGATTAGGCGGTGGGTTTTCATCTTATGGTGGTCGTTCTGGTGGAAGA 357
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGCAACCTGGTCGTTTAGGCGGTGGGTTTTCATCTTATGGTGGTCGTTCTGGTGGAAGA 360
Query 358 ATGGGGAGAGATCGAGATGATTCTGATGGGTC-T----TGG-GGTGGTGGTGGTGGAGGA 411
|| |||||||||||||||||||||||||| || | ||| |||||||||||||| |||
Sbjct 361 ATTGGGAGAGATCGAGATGATTCTGATGGCTCTTGGAGTGGTGGTGGTGGTGGTGGTGGA 420
Query 412 CGGAGACCTTATGGTGGTGGATTTGATGATGATAGGAGGGGAAATCAGTCTAGGGTTTCA 471
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 AGGAGACCTTATGGTGGTGGATTTGATGATGATAGGAGGGGGAATCAGTCTAGGGTTTCG 480
Query 472 GATTTTGCTCAACCTTCTAGAGCTGATGAGGTTGATGATTGGGGGAAAGCGAAGAAACCA 531
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 GATTTTCCTCAACCTTCTAGAGCTGATGAGGTTGATGATTGGGGGAAAGAGAAGAAACCA 540
Query 532 CTTCCTTCTTTTGATCAAGGACGACAAGGTCGTTAcggtggcggtggaggtggttttgga 591
|||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct 541 CTTCCTTCTTTTGATCAAGGACGACAAGGTCGTTACAGTGGCGATGGTGGTGGTTTTGGA 600
Query 592 ggcggtggtggaagtggttttggaggcggtggtggaagtggttttggaggcggtggtgga 651
|||||||||||||||||||||||||||||| | |||| |||| ||||| ||
Sbjct 601 ---GGTGGTGGAAGTGGTTTTGGAGGCGGTGGT-G--GTGG---TGGA---GGTGGAGGG 648
Query 652 TTATCTAGAGCTGATGATGTTGATAATTGGGGTGCAGGGAAAAGGCAAGCACCGGTTAGA 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TTATCTAGAGCTGATGATGTTGATAATTGGGGTGCAGGGAAAAGGCAAGCACCGGTTAGA 708
Query 712 TCATCTACATTTGGGTCAAGTTTTGGTGATTCAGTTCAGGAGGAACGTCGTCGTTTGGTT 771
|||||||| |||||||| |||||||||||||||| |||||| ||||||||||||||||||
Sbjct 709 TCATCTACGTTTGGGTCGAGTTTTGGTGATTCAGGTCAGGAAGAACGTCGTCGTTTGGTT 768
Query 772 TTGGAACCACGGAAGGTTGAATCAGGAGCG-AGTGAAACTCCAACTGTTATTGAGAAGAC 830
||||||||| | |||||||| ||||||| | ||||| |||||| ||||| ||||||||||
Sbjct 769 TTGGAACCAAGAAAGGTTGAGTCAGGAG-GAAGTGAGACTCCACCTGTTGTTGAGAAGAC 827
Query 831 GAGTAAGCCTAACCCGTTTGGAGCAGCTAGACCGAGGGAGGATGTTTTGGCGGAGAAAGG 890
||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 828 GAGTAAGCCGAATCCATTTGGGGCAGCTAGACCGAGGGAGGATGTTTTGGCGGAGAAAGG 887
Query 891 TTTGGATTGGAAGAAGATTGACTCAGAGATTGAGGCTAAGAAAGGAGGTTCTCAAACGAG 950
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 888 TTTGGATTGGAAGAAGATTGACTCAGAGATTGAGGCTAAGAAAGGAAGTTCTCAAACGAG 947
Query 951 TAGGCCAACGAGTGCACATTCGAGCAGACCTTCTAGTGCTCAATCTAACAGGTCTGAGAG 1010
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 948 TAGGCCAACGAGTGCACATTCTAGTAGACCTTCTAGTGCTCAATCTAACAGGTCTGAGAG 1007
Query 1011 TTCAGGGTTGAATAATGTGGTGAAACCGAGACCAAAGGTGAATCCTTTTGGCGATGCGAA 1070
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1008 TTCAGGATTGAATAATGTGGTGAAACCGAGACCAAAGGTGAATCCTTTTGGCGATGCAAA 1067
Query 1071 GCCTCGAGAAGTGTTGCTAGAGGAACAAGGGAAGGATTGGCGTAAGATGGATATGGAACT 1130
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1068 GCCTCGAGAAGTGTTGTTAGAGGAACAAGGGAAGGATTGGCGTAAGATGGATTTGGAACT 1127
Query 1131 CGAGCATCGCAGGGTTGACAGGCCTgaaacagaagaagaaaagatgttgaaagaagagat 1190
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1128 CGAGCATCGCAGGGTTGACAGGCCTGAAACAGAAGAAGAGAAGATGTTGAAAGAAGAGAT 1187
Query 1191 tgaagaacaaaggaaaaaaCTCGAG-------CC--------AGATATCAAGGAATCTGA 1235
|||||| | |||||||||||||||| || ||| ||||||||||||||
Sbjct 1188 TGAAGAGCTAAGGAAAAAACTCGAGAAGGAATCCGTTGCTCCAGAGATCAAGGAATCTGA 1247
Query 1236 TCAAGAACCTGGCAGTAATAATAATCACAATGATTTACCAGAAATAATACGTGGGAAAGA 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 TCAAGAACCTGGCAGTAATAATAATCACAATGATTTACCAGAAATAATACGTGGGAAAGA 1307
Query 1296 GAAAGATTTGGAAATACTAACCCGTGAATTGGACGACAAAGTCAGGTTCAGGCAGAAACC 1355
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 GAAAGATCTGGAAATACTAACCCGTGAATTGGACGACAAAGTCAGGTTCAGGCAGAAACC 1367
Query 1356 AGTTGAGAGGCCCGGGTCTGGTGCAGGCAGAACCGGAACATATTCAGAAAGAACACATTC 1415
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1368 AGTTGAGAGGCCCGGGTCTGGTGCAGGTAGAACCGGAACATATTCAGAAAGAACACATTC 1427
Query 1416 CCGGGCTGGATCAATTGATGAAACCAGGAGTTTTGAATCCACAGAGAGACCCAGATCACG 1475
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1428 CCGGGCTGGCTCAATTGATGAAACCAGGAGTTTTGAATCTACAGAGAGACCCAGATCACG 1487
Query 1476 TGGTGCCGTCGATGCCTGGGTTAGACCAGCCGATGATCAGCGAAGAAACTTCCAAGGAAG 1535
||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||
Sbjct 1488 TGGTGCCGTCGATGCCTGGGTTAGACCAGCCAATGAGCAGCGAAGAAACTTTCAAGGAAC 1547
Query 1536 CAAAGAGCGCGGATTCTTCAGCAACAGGTCTTCCTCTAGGGAAGGATGGTAAGAAGTAAA 1595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1548 CAAAGAGCGCGGATTCTTCAGCAACAGGTCTTCCTCTAGGGAAGGATGGTAAGAAGAAAA 1607
Query 1596 CGAAGAACAACCAAATGTGGGATATGTTTAACTACT-CTACTCAGTTCCCAGATTTTGAA 1654
||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 1608 CGAAGAACAACCAAATGTGGGATATCTTTAACTACTACTACACAGTTCCCAGATTTTGAA 1667
Query 1655 GAAGACTTAGAG 1666
||||||||||||
Sbjct 1668 GAAGACTTAGAG 1679
> AT1G13020.1 | Symbols: EIF4B2 | eukaryotic initiation factor
4B2 | chr1:4440544-4443684 REVERSE LENGTH=2197
Length=2197
Score = 566 bits (306), Expect = 3e-160
Identities = 677/849 (80%), Gaps = 53/849 (6%)
Strand=Plus/Plus
Query 745 GTTCAGGAGGAACGTCGTCGT-TTGGT-TTTGGAACCACGGAAGGTTGAAT-CAGGAGCG 801
|||||||| || || |||||| || || ||| |||||||| |||| || || ||| || |
Sbjct 948 GTTCAGGAAGAGCGACGTCGTCTT-GTATTT-GAACCACGAAAGGCTG-ATACAGAAGTG 1004
Query 802 AGTGAAACTCCAACTGTTATTGAGAAGACGAGTAAGCCTAACCCGTTTGGAGCAGCTAGA 861
|||||||||||||||| || ||||||||||||||| | || |||||||||||||||
Sbjct 1005 AGTGAAACTCCAACTG---CTGTGAAGACGAGTAAGCCGAGTCCATTTGGAGCAGCTAGA 1061
Query 862 CCGAGGGAGGATGTTTTGGCGGAGAAAGGTTTGGATTGGAAGAAGA-TTGACTCAGAGAT 920
||||| ||| | ||||||||||||||||| ||||| |||||||| | ||||||| || ||
Sbjct 1062 CCGAGAGAGCAAGTTTTGGCGGAGAAAGGATTGGACTGGAAGAA-ACTTGACTCGGATAT 1120
Query 921 TGAGGCTAAGAAAGGAGGTTCTCAAACGAGTAGGCCAACGAGTGCACATTCGAGCAGACC 980
|||||| ||| || | || ||||| || || ||| | || || || |||||||||||
Sbjct 1121 TGAGGCCAAG-AA-G-GG---ACAAACAAGCAGACCATCAAGCGCGCAATCGAGCAGACC 1174
Query 981 TTCTAGTGCTCAATCTAACAGGTCTGAGAGTTCAGGGTTG---AA--T----AATGTGGT 1031
|| ||||||||||||||||||||||||||||||| ||| || | ||||||||
Sbjct 1175 ATCAAGTGCTCAATCTAACAGGTCTGAGAGTTCAGCATTGAACAATGTGGAGAATGTGGT 1234
Query 1032 GAAACCGAGACCAAAGGTGAATCCTTTTGGCGATGCGAAGCCTCGAGAAGTGTTGCTAGA 1091
|||||||||||||||||||||||||||||| ||||| || ||||| ||||| ||||| ||
Sbjct 1235 GAAACCGAGACCAAAGGTGAATCCTTTTGGTGATGCAAAACCTCGGGAAGTATTGCTGGA 1294
Query 1092 GGAACAAGGGAAGGATTGGCGTAAGATGGATA-TGGAACTCGAGCATCGCAGGGTTGACA 1150
|||||||||||| |||||||| ||||| ||| || ||||||||||||||||||||||||
Sbjct 1295 GGAACAAGGGAAAGATTGGCGCAAGATTGATTCTG-AACTCGAGCATCGCAGGGTTGACA 1353
Query 1151 GGCCTgaaacagaagaagaaaagatgttgaaagaagagattgaagaacaaaggaaaaaaC 1210
||||||||||||| | ||| | ||||||||| |||||||||||||||| | |||| ||||
Sbjct 1354 GGCCTGAAACAGAGGGAGAGAGGATGTTGAAGGAAGAGATTGAAGAACTACGGAAGAAAC 1413
Query 1211 TCGAGCCAG-AT--ATCAAG-GAATCTGAT--CAAG-AACCTGG-CAGTAAT---A-A-T 1257
||||| || | | | | | | |||| |||| || || ||| ||| | | |
Sbjct 1414 TCGAGA-AGGAGGCAGCCATTGCACCTGAGAGCAAGGAATCTCAACAGGAATCCGACAGT 1472
Query 1258 AATCAC-AATGATTTACCAGAAATAATACGTGGGAAAGAGAAAGATT-TGGAAATACTAA 1315
|||||| || || |||| || | ||||||| |||||| ||||| | || |||| |
Sbjct 1473 AATCACCAAA-ATCTACCGGATCTCATACGTGAGAAAGA-AAAGAACCTAGACTTACTGA 1530
Query 1316 CCCGTGAATTGGACGACAAAGTCAGGTTCAGGC-A-GAAACCAGTTGAGAGGCCCGGGTC 1373
|||||| |||||||||||||||||||||||| | || | |||||||||||| || ||
Sbjct 1531 TCCGTGAGCTGGACGACAAAGTCAGGTTCAGGCCACGAG-C-AGTTGAGAGGCCTGGATC 1588
Query 1374 TGGTGCAGGCAGAACCGGAACATATTCAGAAAGAACACATTCCCGGGCTGGATCAATTGA 1433
||||| ||||| ||| | |||||||||||| ||||||| |||||||||||||| ||
Sbjct 1589 CAGTGCAAGCAGAGGCGGTTCCTATTCAGAAAGACCACATTCACGGGCTGGATCAATCGA 1648
Query 1434 TGAAACCAGGAGTTTTGAATCCACAGAGAGACCCAGATCACGTGGTGCCGTCGATGCCTG 1493
||| | |||||| ||||||||| || ||||| ||||||| ||| | | |||| ||
Sbjct 1649 TGAGTCTAGGAGTGTTGAATCCATGGAAAGACCTAGATCACATGGCACAGGCGATAATTG 1708
Query 1494 GGTTAGACCAGCCGATGATCAGCGAAGAAACTTCCAAGGAAGCAAAGAGCGCGGATTCTT 1553
| ||||||| ||||||| | ||||||||||||||||||||| || || ||||||||
Sbjct 1709 GCCAAGACCAGTAGATGATC-G--AAGAAACTTCCAAGGAAGCAAGGAACGTGGATTCTT 1765
Query 1554 CAGCAACAG 1562
|| ||||||
Sbjct 1766 CAACAACAG 1774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82328893800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5