BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484403
Length=1504
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26410.1 | Symbols: TRM11, AtTRM11 | methyltransferases;nucl... 2366 0.0
> AT3G26410.1 | Symbols: TRM11, AtTRM11 | methyltransferases;nucleic
acid binding | chr3:9669416-9671348 REVERSE LENGTH=1601
Length=1601
Score = 2366 bits (1281), Expect = 0.0
Identities = 1434/1508 (95%), Gaps = 10/1508 (1%)
Strand=Plus/Plus
Query 1 TTGACAAATTAGGGTTTTGGATTT-TGGGGaaaaaaagagagagagagagaTGTGGTTTC 59
||| |||||||||||||| | ||| |||| ||| ||||||||||||||||||||||||
Sbjct 29 TTGTCAAATTAGGGTTTTCG-TTTCAGGGG--AAAGAGAGAGAGAGAGAGATGTGGTTTC 85
Query 60 TATGTGTATTCTATCACAGACTATTAGATTTCAGAAAGCCAGAAGTTGAAGCTTTAGCTG 119
| ||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 86 TGTGTGTCTTCTATCACAGGCTATTAGACTTCAGAAAGCCAGAAGTGGAAGCTTTAGCTG 145
Query 120 AACTCTTCGGAGAAGAGATTGCAGAGAATGAGTCTCTCCAATGGCGTTTACCTGAACATC 179
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 146 AACTCTTCGGAGAAGAGATTGCAGAGAATGAGTCTCTCCAATGGCGTCTACCTGAAAATC 205
Query 180 ATCATAACGATACTCCATTCCATTTCGTTCAACTTTCTTCAGAAGAAATCGCTCGTAACA 239
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 206 ACCATAACGATACTCCATTCCATTTCGTTCAACTTTCATCTGAAGAAATCGCTCGTAACA 265
Query 240 TTGCTAAAAGAAGCATATTGGTGAAAGGAATGTATGAGCTTTGGGGTGAAGGAACTTGTT 299
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 TTGCTAAACGAAGCATATTGGTGAAAGGAATGTATGAGCTTTGGGGTGAAGGAACTTGTT 325
Query 300 ATGAAGAGCTTAAAGACTCGATTCAAAGTTACCCTGATTCTCGAAAGCTTCCATTTCTAA 359
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 326 ATGAAGAGCTTAAAGACTCGATTCAAAGCTACCCTGATTCTCGAAAGCTTCCATTTCTCA 385
Query 360 CTTCTGATTCAACTTTTAGAATCTCTGTTGAAACTTTTGGAAAGGCTTTAACTTTTGAAG 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 386 CTTCTGATTCAACTTTTAGAATCTCTGTTGAAACTTTTGGAAAGGCTTTAACTTTTGACG 445
Query 420 AGCA-AAAGGATCGAATCCAGTC-TCTTACTTATATACCATTTGAGGGTCGGGTTAATTT 477
|||| ||| |||||||||||||| | ||||||||||||||||||||||||| ||||| ||
Sbjct 446 AGCAGAAA-GATCGAATCCAGTCGT-TTACTTATATACCATTTGAGGGTCGTGTTAACTT 503
Query 478 GAAGAACCCAGATCACAACTTTTTTCTAATGGAAATGATTGAATCTGAAGAGAACAATGG 537
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 GAAGAACCCAGATCATAACTTTTTTCTAATGGAAATGATTGAATCTGAAGAGAACAATGG 563
Query 538 ACTTCAACCTATTCTGCAGAGGAGGATATTTTTTGGGAGGGAGGTTGGTTTTGCTGATAG 597
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 564 ACTTCAACCTATTCTACAGAGAAGGATATTTTTTGGGAGGGAGGTTGGTTTTGCTGATAG 623
Query 598 GAAGCTTTTACCTACATTTCAGTTGAAATCTCGTACTTACCTTGGTCCGACTGCTATGGA 657
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 624 GAAGCTTTTACCTACATTTCAGTTGAAATCTCGTACTTACCTTGGTCCAACTGCTATGGA 683
Query 658 TGCTGAAATGGCTTTCTTAATGGCTAATCAAGCGAAAGCTACATCGGGGAAACTTGTGTA 717
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 684 TGCTGAAATGGCTTTCTTAATGGCTAATCAAGCGAAAGCTACTTCGGGAAAACTTGTGTA 743
Query 718 TGATCCTTTTGTTGGTACTGGGAGCATTCTTGTTTCTGCTGCTCGGTTTGGCGCAATGAC 777
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 744 TGATCCTTTTGTTGGTACTGGGAGCATTCTTGTTTCTGCTGCACGCTTTGGCGCAATGAC 803
Query 778 AATGGGTGCAGATATTGATATCAGAGTAGTGCGTGATGGACGTGGTCCAGATTGTAATGT 837
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 AATGGGTGCAGATATCGATATCAGAGTAGTGCGTGATGGACGTGGTCCAGATTGTAATGT 863
Query 838 TTGGAGCAATTTCAAGCAGTATGGATTACCTACGCCAGTAGCTTTACTTAGAATGGATAA 897
||||||||||||||| |||||||||||||| | ||| |||||||||||||||||||||||
Sbjct 864 TTGGAGCAATTTCAAACAGTATGGATTACCAATGCCGGTAGCTTTACTTAGAATGGATAA 923
Query 898 CAATGTTCCTCCTTGGCGTTCGGGGCTAAAGGAGATCTTTGATGCAATTATCTGTGATCC 957
|| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 924 TAACGTTCCTCCTTGGCGATCGGGGCTAAAGGAGATCTTTGATGCAATTATCTGCGATCC 983
Query 958 ACCTTACGGGGTTCGAGCTGGTGGACGTAAATCCGGTGGTCGGAAAATTCTTAGAGGGAC 1017
||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||
Sbjct 984 ACCTTACGGGGTTCGTGCTGGTGGACGTAAATCCGGTGGTAGGAAAATCCTTAGAGGAAC 1043
Query 1018 AGTGGATCCTTACACCGTCCCTGATGACAAAAGAACAGATCACATTCCATCCACTGGTGC 1077
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 AGTGGATCCTTACACTGTCCCTGATGACAAAAGAACAGATCACATTCCATCCACTGGTGC 1103
Query 1078 ATATAGTCTAGTGGAGTGTGTTCATGATCTGCTTCATCTTGCTGCAAGAATGCTGGTGAT 1137
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1104 ATATAGTCTAGTGGAGTGTGTTCATGATCTACTTCATCTTGCTGCAAGAATGTTGGTGAT 1163
Query 1138 GAAAGGCAGGCTCGTCTTTTTCTTCCCGGTTTTGAGAGATGAGACTGGCAGCGAGGTTAA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 GAAAGGCAGGCTCGTCTTTTTCTTCCCGGTTTTGAGAGATGAGACTGGCAGCGAGGTTAA 1223
Query 1198 GTTTCCCG-AGCACCCGTGTTTCAAGTTAGTAGCTGTCTCTGAACAGATCCTGAGCTCGA 1256
||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1224 GTT-CCCGGAGCACCCGTGTTTCAAGTTAGTAGCTGTATCTGAACAGATCCTGAGCTCGC 1282
Query 1257 GATACAGTCGTGTTCTGCTAACCATGGTGAAAGTGGAGCCTTATAGTGAAGATATTGAAG 1316
| |||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 1283 GGTACAGTCGGGTTCTGCTAACGATGGTGAAAGTAGAGCCTTATAGTGAAGAGGTTGAAG 1342
Query 1317 AAGCTGCTCGTTTAATGCATTTAGAGTTTAGAGAGAATCATCTTAAGTGGTTAGAGGACG 1376
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1343 AAGCTGCTCGTTTAATGCATTTAGAGTTTAGAGAGAATCATCTTAAGTGGTTAGAGGATG 1402
Query 1377 GTAATATTCATTCCTCTGTTTTTAAACCCATTGATTCTTCTCAGATTCACACTGATCCCA 1436
|||||||||| |||||| | || |||||||||||||||||||||||| |||||||| |||
Sbjct 1403 GTAATATTCACTCCTCTATATTCAAACCCATTGATTCTTCTCAGATTGACACTGATTCCA 1462
Query 1437 AAACCTTTAAAGATCCAAAACCTAAGTATAGAGGGAAGTATGTGTAAGCACTGAGTTTTG 1496
|| |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1463 AAGCCTTCAAAGATCCAAAACCTAAGTATAGAGGGAAGTATGTGTAAGCAATTAGTTTTG 1522
Query 1497 TGTTCTTT 1504
|||| |||
Sbjct 1523 TGTTTTTT 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74196405510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5