BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484411
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26500.1 | Symbols: PIRL2 | plant intracellular ras group-re... 2161 0.0
AT1G12970.1 | Symbols: PIRL3 | plant intracellular ras group-re... 579 3e-164
> AT3G26500.1 | Symbols: PIRL2 | plant intracellular ras group-related
LRR 2 | chr3:9708109-9709964 REVERSE LENGTH=1522
Length=1522
Score = 2161 bits (1170), Expect = 0.0
Identities = 1358/1451 (94%), Gaps = 4/1451 (0%)
Strand=Plus/Plus
Query 1 GACTAATAATCACAAAAACCATGGATCACGATCTCGACAAATTCCCTTTACTCTCTTATG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GACTAATAATCACAAAAACCATGGATCACGATCTCGACAAATTCCCTTTACTCTCTTACG 60
Query 61 TCCTTCACCAACTTGACTCCAATCTCCACGCGCCGCCGTCTATGGCTGCGCAAGAAACTC 120
||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 TCCTTCATCAACATGACTCCAATCTCCACGCGCCGCCGTCTATGGCCGCGCAAGAAACTC 120
Query 121 TCCTTCCTTCTTTTCCTCTTCTCTCCGATCCTCAAGTCATGTCT-TCTTTGACTCAATCC 179
|||||||||||||||||||||||||| |||| || |||||||| | || ||||||||||
Sbjct 121 TCCTTCCTTCTTTTCCTCTTCTCTCCAATCCAGAAATCATGTCTATGTT-GACTCAATCC 179
Query 180 ATCCCCACCACCATCACACAGACGCTTTTCGTCTTCAACTCTCTCGGCTCTCGTCCCGAT 239
|||||||| || ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 180 ATCCCCACAACGATCACACAGACGCTTTTCGTCTTCAACTCTCTCGGCTCTCGACCTGAT 239
Query 240 CCCTTGGCGGTCTCCTCTGCTCGGTCCAAGATCGCTCAGATTATGGATTCGCTCTCGCCG 299
||||| ||||| ||||||||||| | |||||||||||| |||||||||||||||||||||
Sbjct 240 CCCTTAGCGGTTTCCTCTGCTCGATTCAAGATCGCTCAAATTATGGATTCGCTCTCGCCG 299
Query 300 GAAGAAGCGGCAAAGGAGTCGGAGATTTACACCGGAGTTGTGCGGTTGGATGAGGTACAC 359
|| ||||| || ||||||||||||||||| |||| ||||||||||||||||| || |||
Sbjct 300 GAGGAAGCAGCGAAGGAGTCGGAGATTTATGCCGGGGTTGTGCGGTTGGATGAAGTGCAC 359
Query 360 GATAGTTACGAGAAGAAGTTGAAGGATATAGAGGAGGAGCTTTCTAGGGTTTATGCTACG 419
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 360 GATAGTTACGAGAAGAAGTTGAAGGATACAGAGGAGGAGCTTTCTAGGGTTTATTCTACG 419
Query 420 GAGGTAGAATCGTTGTTGAGAAGCGGCGAAGAAGTGAATGAGGAGGTTGTTGCTGTGCTC 479
||||| |||||| ||||||||||||| ||||||||||| ||| ||||| |||| ||||||
Sbjct 420 GAGGTGGAATCGATGTTGAGAAGCGGTGAAGAAGTGAACGAGAAGGTTCTTGCGGTGCTC 479
Query 480 AAGGTGGCGGAATCCGGCGAAATCAATGAGAGGATCGATCTCTCTGGCCAAGAACTTAAG 539
|||| |||||||||||||| || | ||||||||| |||||||| ||||||||||||||
Sbjct 480 AAGGAGGCGGAATCCGGCGGAACCGTTGAGAGGATTGATCTCTCCAGCCAAGAACTTAAG 539
Query 540 CTTCTCCCTGAAGCGTTTTGGAAAGTAGTTGGCTTAGTTTACTTGAATCTCTCTGGCAAT 599
||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 540 CTTATCCCTGAAGCTTTTTGGAAAGTAGTTGGCTTAGTATACTTGAATCTCTCTGGCAAT 599
Query 600 GACTTGACGGTTATACCTGATGCAATCTCGAAACTCAAGAAGCTAGAAGAGCTCGATGTA 659
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GACTTGACGTTTATACCGGATGCAATCTCGAAACTCAAGAAGCTAGAAGAGCTCGATGTA 659
Query 660 TCTTCAAATTCTCTTG-AATCTCTTCCTGACTCTATAGGAATGTTGCTTAACCTTAGGAT 718
|||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 660 TCTTCAAATTCT-TTGGAATCTCTTCCTGACTCTATAGGGATGTTGCTTAACCTTAGAAT 718
Query 719 CCTTAATGTGAATGGGAACAATCTAACCGCACTCCCTGAGAGCATCGCGCATTGCAGGTC 778
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CCTTAATGTGAATGCGAACAATCTAACCGCACTCCCTGAGAGCATCGCGCATTGCAGGTC 778
Query 779 ACTGGTTGAGTTAGATGCAAGCTACAACAACTTGACTACATTGCCTACAAATATTGGATA 838
||| ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 779 ACTAGTTGAGTTAGATGCAAGCTACAACAACTTGACTTCATTACCTACAAACATTGGATA 838
Query 839 CGGATTACAGAACCTGGAGAGATTATCGATCCAGCTGAACAAACTCCGTTACTTTCCAGG 898
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CGGATTACAAAACCTCGAGAGATTATCGATCCAGCTGAACAAACTCCGTTACTTTCCAGG 898
Query 899 TTCGATAAGCGAAATGTATAATCTGAAGTATCTTGACGCACACATGAACGAGATCCACGG 958
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 899 TTCGATAAGTGAAATGTATAATCTAAAGTATCTTGACGCACACATGAACGAGATCCACGG 958
Query 959 GATACCGAATTCTATCGGGAGGCTAACGAAACTCGAGGTTCTAAACCTAAGCAGCAATTT 1018
|||||| || || |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 959 GATACCAAACTCGATCGGGAGACTAACGAAACTTGAGGTTCTAAACCTAAGCAGCAATTT 1018
Query 1019 CAACAACTTGATGGGTGTTCCTGACACAATCACTGATCTAACTAACCTGAGGGAGCTTGA 1078
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1019 CAACAACTTGATGGGTGTCCCTGACACTATCACTGATCTAACTAACCTGAGGGAGCTTGA 1078
Query 1079 TCTAAGCAACAACCAAATCCAAGCGATACCAGACTCATTTTACAGGCTGAGGAAGCTGGA 1138
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1079 TCTAAGCAACAACCAAATCCAAGCTATACCAGACTCATTTTATAGGCTGAGGAAGCTAGA 1138
Query 1139 GAAACTGAACTTGGACCAGAACCCGCTTGAGATCCCGTCTCAAGAAGTGGCTAGTCAAGG 1198
|||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1139 GAAACTGAACTTGGACCAAAACCCGCTTGAGATCCCATCTCAAGAAGTGGCTACTCAAGG 1198
Query 1199 AGCTGAAGCGGTTAGAGAGTTTATGAAGAAGAGATGGAGTGAGATTATGGCAGAGCAGCA 1258
|||||||| |||||||||||||||| |||||||||| |||| || ||||||||||||||
Sbjct 1199 AGCTGAAGTTGTTAGAGAGTTTATGAGGAAGAGATGGGGTGATATCATGGCAGAGCAGCA 1258
Query 1259 ACAGAGGATTGGCGTTGAGGCTGAGAGACATGGAAATGAAACCGGGTGGGTCTATTGGGG 1318
||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||
Sbjct 1259 ACAGAGGATTGGCGTTGAGGCTGAGCGACATGGAGATGAAAACGGGTGGGTCTATTGGGG 1318
Query 1319 AACCTCCATGGTTACTAATCTTGTTTATGGAGTGACACAGACCATTGGATTTGGAGGAGC 1378
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct 1319 AACCTCCATGGTTACTAATCTTGTTTCTGGAGTGACCCATACCATTGGATTTGGAGGAGC 1378
Query 1379 ATCTAGTGATGGTGGAGATAAGAAACCTGGAGACTCGTATTTTTATCACCAAATCTGACT 1438
| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1379 AACTAGCGATGGTGGAGATAAGAAACCGGGAGACTCGTACTTTTATCACCAAATCTGACT 1438
Query 1439 TCAGCTAAATT 1449
|| ||||||||
Sbjct 1439 TCTGCTAAATT 1449
> AT1G12970.1 | Symbols: PIRL3 | plant intracellular ras group-related
LRR 3 | chr1:4423640-4425789 FORWARD LENGTH=1639
Length=1639
Score = 579 bits (313), Expect = 3e-164
Identities = 1030/1365 (75%), Gaps = 94/1365 (7%)
Strand=Plus/Plus
Query 21 ATGGATCACGATCTCGACAAATTCCCTTTACTCTCTTATGTCCTTCACCAACTT--GACT 78
|||||||| |||||||| | |||||||||||||| || ||||| |||| | || || |
Sbjct 88 ATGGATCATGATCTCGAGATCTTCCCTTTACTCTCCTACGTCCTCCACC-A-TTCCGA-T 144
Query 79 -CC-AATCTCCACGCGCCGCCGTCTATGGCTG-CGCAAGAAACTCTCCTT-C-CTTC-TT 132
|| ||| |||||||| |||||| | || | | || || ||| ||| | || ||
Sbjct 145 CCCGCTTCT-CACGCGCCACCGTCTCTAGC-GATTC-AGCAA-TCT-CTTGCGAATCGTT 199
Query 133 TTCCTCTTCTCTCCGATCCTCAAGTCATGTCTTCTTTGACTCAATCCATCCCCACCACCA 192
||| |||||| || ||||| | || || || || |||| | |||| || |||| || |
Sbjct 200 ATCCCCTTCTCACCAATCCTTATGTAATCTCCTCGTTGATTGAATCAATTCCCAGTACAA 259
Query 193 TCACACAGACGCTTTTCGTCTTCAACTCTC-TCGGCTCTCGTCCCGATCCCTTGGCGGTC 251
|||| ||||| |||||||| || ||||| | ||| | || || ||||| || || |||
Sbjct 260 TCACGCAGACCCTTTTCGTATTTGGCTCTCTTGGGC-CACGACCTGATCCTTTAGCTGTC 318
Query 252 TCCTCTGCTCGGTCCAAGAT-C----GCTC--AGATTATGGATTCGCTCTCGCCGGAAGA 304
|| ||||||||||| ||||| | | || ||| || ||||| | |||||||||||
Sbjct 319 TCTTCTGCTCGGTCTAAGATCCGAGAGATCAAAGAGAAT-GATTCTTTATCGCCGGAAGA 377
Query 305 AGCGGCAAAGG-AGTCGGAGATTTACACCG-GAGTTGTGCGGTTGGATGAGGTACACGAT 362
||||| |||| || | || ||||| | | | |||||| | || || || || || ||
Sbjct 378 TGCGGCTAAGGAAG-AGCAGGTTTACGCTGCG-GTTGTGAGTTTAGAGGAAGTTCATGA- 434
Query 363 A-GTTACGAGAAGAAGTTGAAG-GATATAGAGGAGGAGCTTTCTAGGGTTTATGCTACGG 420
| | || |||||| |||| ||| ||| | ||||||||| || ||||||||||||| |||
Sbjct 435 AGGATATGAGAAGCAGTT-AAGAGATTTGGAGGAGGAGATTGGTAGGGTTTATGCTTCGG 493
Query 421 AGGTAGAATCGTTGTTGAGAAGCGGCGAAGAAGTGAATGAGGAGGTTGTT-GCTGTGCTC 479
||| ||||| ||||| | || || |||||||||||||||||| || || ||| |
Sbjct 494 CGGTTGAATC---ATTGAGCGGTGGTGATGAAGTGAATGAGGAGGTT-TTAGCGGTGATT 549
Query 480 AAGGTGGCGGAATCCGGCGAAATCAATGAGAGGATCGATCTCTCTGGCCAAGAACTTAAG 539
|| | || ||| || | | || ||| ||||| ||||| |||| || || ||||||
Sbjct 550 AAAGACGCTGAAGATGGTGGAGTCGTTGAAAGGATTGATCTTTCTGATCATGAGCTTAAG 609
Query 540 CTTCTCCCTGAAGCGTTT-TGGAAAGTAGTTGGCTTAGTTT-ACTTGAATCTCTCTGGCA 597
||||| ||||| || ||| ||||| | || || || |||| || ||||| ||||| | |
Sbjct 610 CTTCTTCCTGATGC-TTTAGGGAAAATCGTCGGTTTGGTTTCAC-TGAATGTCTCTCGTA 667
Query 598 ATGACT-TGACGG-TTATACCTGATGCAATCTCGA-AACTCAAGAAGCTAGAAGAGCTCG 654
| | | | | || || |||||||| ||||||| | ||| |||| || || ||||| |
Sbjct 668 A-CAATCTCA-GGTTTCTACCTGATACAATCTC-AGGACTTGAGAAACTGGAGGAGCTAG 724
Query 655 ATGTATCTTCAAATTC-TCTTGAATCTCTTCCTGACTCTATAGGAATGTTGCTTAACCTT 713
|| |||||||||| | ||| | | |||||| |||||||| ||| |||| ||||| ||
Sbjct 725 ATTTATCTTCAAA-CCGTCTCGTGTTTCTTCCCGACTCTATTGGACTGTTACTTAA-TTT 782
Query 714 -AGGATCCTT-AATGTGAATGGGAACAATCTAACCGCACTCCCTGAGAGCATCGCGCATT 771
||||| ||| ||||||| |||||||| ||||| |||||| || ||||| ||||| |
Sbjct 783 GAGGAT-CTTAAATGTGACGGGGAACAAGCTAACTTTACTCCCAGAAAGCATTGCGCAAT 841
Query 772 GCAGGTCACTGGTTGAGTTAGATGCAAGCTACAACAACTTGACTACATTGCCTACAAATA 831
||||||||||||| ||||||||||| |||| ||||||||||||| | |||||| ||||
Sbjct 842 GCAGGTCACTGGTAGAGTTAGATGCCAGCTTCAACAACTTGACTTCTTTGCCTGCAAA-C 900
Query 832 TT-GGATACGGATTACAGAACCTGGAGAGATTATCGATCCAGCTGAACAAACTCCGTTAC 890
|| ||||||||||||| || || || || |||||||||||||||||||| |||||| |
Sbjct 901 TTCGGATACGGATTACTCAATCTCGAAAGGCTATCGATCCAGCTGAACAAAATCCGTTTC 960
Query 891 TT-TCCAGGTTCGATAAGCGAAATGTATAATCTGAA-GTATCTTGACGCACACATGAACG 948
|| ||| ||| ||| | || ||| | ||| || |||||| ||||||||||||||||
Sbjct 961 TTCCCCA-ATTCCATATGTGAGATGCGTTCTCT-AAGGTATCTCGACGCACACATGAACG 1018
Query 949 AGATCCACGGGATACCGAAT-TCTATCGGGAGGCTAACGAAA-CTCGAGGTTC-TAAACC 1005
| |||||||| | || ||| |||| ||||| || || ||| || || | || | |||
Sbjct 1019 AAATCCACGGCCTTCC-AATCGCTATAGGGAGACTCAC-AAACCTTGAAG-TCATGAACT 1075
Query 1006 TAAGCAGCAATTTCAACAACTTGATGGGTGTTCCTGACACAATCACTGATCTAACTAACC 1065
| |||||||| |||| | ||||||| | |||||||||||||| ||||| || |||||
Sbjct 1076 TGAGCAGCAACTTCAGCGACTTGATTGAACTTCCTGACACAATCTCTGATTTAGCTAACT 1135
Query 1066 TGAGGGAGCTTGATCTAAGCAACAACCAAATCCA-AG-CGATACCAGACTCATTTTACAG 1123
|||||||||| ||||| ||||||||||| || || || | | || ||||| |||| |||
Sbjct 1136 TGAGGGAGCTAGATCTCAGCAACAACCAGAT-CAGAGTC-TTGCCTGACTCGTTTTTCAG 1193
Query 1124 GCT-GAGGAAGCTGGAGAAACTGAACTTGGACCAGAACCCGCTTG-AG-ATCCCGTCTCA 1180
||| || ||||||||||||||||||||||||||||||||| ||| || ||||| | ||
Sbjct 1194 GCTGGA-GAAGCTGGAGAAACTGAACTTGGACCAGAACCCT-TTGGAGTATCCCC-CACA 1250
Query 1181 AGA-AGTGGCTAGTCAAGGAGCTGAAGCGGTTAGAGAGTTTATGAAGAAGAGATGG-AGT 1238
||| | ||| || ||| | |||||||| ||| ||||||| |||| |||||| ||| |
Sbjct 1251 AGAGA-TGGTTAACCAAAGCGCTGAAGCAGTTCGAGAGTTCATGAGGAAGAGGTGGGAA- 1308
Query 1239 GAGATTATGGCAG-A-GCAGCAACAGAGGATTG-GCGTTGAGGCTGAGA-G-A-CATGGA 1292
||||| ||| || | | ||||| ||||| || | |||| ||||||| | | || |||
Sbjct 1309 GAGATGGTGG-AGGAAG-AGCAATTGAGGAGTGTGA-TTGAAGCTGAGAAGCAACAAGGA 1365
Query 1293 A-ATGAAACCGGGTGGGTCT-ATTGGGGAACCTCCATGGTTACTA 1335
| | ||| || ||| ||| || ||||| | ||||| |||||||
Sbjct 1366 GGA-GCAACAGGTTGGCTCTCATGGGGGAGC-TCCATTGTTACTA 1408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71435375535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5