BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484424
Length=2159
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26600.1 | Symbols: ARO4 | armadillo repeat only 4 | chr3:97... 3330 0.0
> AT3G26600.1 | Symbols: ARO4 | armadillo repeat only 4 | chr3:9769744-9772035
FORWARD LENGTH=2292
Length=2292
Score = 3330 bits (1803), Expect = 0.0
Identities = 2050/2169 (95%), Gaps = 17/2169 (1%)
Strand=Plus/Plus
Query 1 aacaacaacaacaacacactagtaacaacaGTAGCATCACCTTGAAAGAGAGAGC-AAAT 59
||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||
Sbjct 41 AACAACAACAACAACACACTAGTAACAACAGTAGCATCAGCTTGAAAGAGAGAACTAAA- 99
Query 60 CCCTAGAAATCGAGAGAGATTGGTGGAAGA-TTTTCACCAGATTTTAAT-GG-G-AGAAG 115
||||||||||||||||||||||||||||| ||||||||||| ||| || || | |||||
Sbjct 100 ACCTAGAAATCGAGAGAGATTGGTGGAAGATTTTTCACCAGA-TTTCATGGGAGAAGAAG 158
Query 116 AGAGTCGAATTGGAGACGAGCTTTCGATTTTGGTACTCACGGCGGAGCGACTCCGTGTAG 175
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 159 AGAGTCGAATTGGAGACGAGCTTTCGATTTTGGTTCTCACGGCGGAGCGACTCCGTGTAG 218
Query 176 -TGGTGGATGAAGCTGAATCGTTCAAAACAGAGTGTGGTGAGGTTGGGAAACTAGTAGAT 234
| ||||||||||||||||| ||||||||||||||||| |||||||| |||| |||||||
Sbjct 219 CT-GTGGATGAAGCTGAATCATTCAAAACAGAGTGTGGCGAGGTTGGTAAACAAGTAGAT 277
Query 235 CGGCTTGCTCAAATGCTTAGAACACTTGCTCGATTCGTCTCTAGTTCTTCTCAACAGGTT 294
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 278 CGGCTTGCTCAAATGCTTAGAACACTTGTTCGATTCGTCTCTAGTTCTTCTCAACAAGTT 337
Query 295 TATGATCGGCCGATTCGTAGAGTTATCGTCGATGTTAAGAAGAATCTAGAGCGAGGTTTT 354
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 338 TATGATCGGCCGATTCGTAGAGTTATCGTCGATGTTAAGAAGAATCTCGAGCGTGGTTTT 397
Query 355 TCTCTGGTTCGTAAGTGTCGGAGACACAATATTATCCGGCGAGTTTGTACTATCATCAAC 414
|||| |||||||||||| ||||||||||||| ||||| |||||||||||||||||||||
Sbjct 398 GCTCTTGTTCGTAAGTGTAGGAGACACAATATAATCCGACGAGTTTGTACTATCATCAAC 457
Query 415 GCTGCTGATTTTCGTAAGGTGATTAATCTTCTCGAATCTTCTAATGGTGATGTGAAATGG 474
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 458 GCTGCTGATTTTCGTAAGGTGATTAATCTTCTGGAATCTTCTAATGGTGATGTGAAATGG 517
Query 475 ATTCTGAGTGTGTTTGATTCTGACGGAGATGGAAGTTTTGGTGGTGGAATTGTGATTTCG 534
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 518 ATTCTGAGTGTGTTTGATTCCGACGGAGATGGAAGTTTTGGTGGTGGAATCGTGATTTCG 577
Query 535 CTTCCTCCGATTGCTACGAATGATCCGATTTTGCCTTGGGTTTGGTCTTTGGTTGCGTCG 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 CTTCCTCCGATTGCTACGAATGATCCGATTTTGCCTTGGGTTTGGTCTTTGGTTGCGTCG 637
Query 595 ATACAGATGGGGAAATTGGTTGATAAGATTGACGCGGCGAATCAGCTTGGTTCTCTTGCC 654
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 638 ATACAGATGGGGAAATTGGTTGATAAGATTGATGCGGCGAATCAGCTTGGTTCTCTTGCC 697
Query 655 GGAGATAATGATCGGAATAAGAAGATTATTGTTGATGAAGGTGGTGTTTCTCCGTTGTTG 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 GGAGATAATGATCGGAATAAGAAGATTATTGTTGATGAAGGTGGTGTTTCTCCGTTGTTA 757
Query 715 AGGCTTTTAAAGGAGAGTTCATCGGCGGAGGGGCAAATCGCGGCGGCTACTGCGTTAGGG 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 AGGCTTTTAAAGGAGAGTTCATCGGCGGAGGGGCAAATCGCGGCGGCTACTGCGTTAGGG 817
Query 775 TTATTGGCTTGTGATGAAGATAAGGTTAGGTCTATTGTTAATGAACTCGGTGTTCCGATT 834
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 818 TTGTTGGCTTGTGATGAAGATAAGGTTAGGTCTATTGTTAATGAACTTGGTGTTCCGATT 877
Query 835 ATTGTTCAGGTTCTTGGGGATGCTTCGGTTAGAGTTCAGATTAAGGTAGCTACATTGGTT 894
||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 878 ATTGTTCAGGTTCTTGGTGATTCTTCTGTTAGAGTTCAGATTAAGGTAGCTACATTGGTT 937
Query 895 GCTAGAATGGCTGAACATGATCCTGTTGCTCAAGATGAGTTTGCTAGGCAGAGTGTGATT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 GCTAGAATGGCTGAACATGATCCTGTTGCTCAAGATGAGTTTGCTAGGCAGAGTGTGATT 997
Query 955 AAGCCGCTAGTTACGTTGCTTTCACTTGATGT-TTTCGTGGATGACATTCATTTGAGTAA 1013
||||| |||||||||||||||| |||||||| ||| || ||||| ||||||||||||||
Sbjct 998 AAGCCATTAGTTACGTTGCTTTCGCTTGATGTGTTT-GTTGATGATATTCATTTGAGTAA 1056
Query 1014 GCATAATAGTATTCACTCTCTTGTTCAGATGAACAAAGAGGTTGAGAAAGATCCGTCTTC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 GCATAATAGTATTCACTCTCTTGTTCAGATGAACAAAGAGGTTGAGAAAGATCCGTCTTC 1116
Query 1074 AAAACTTTATAGGCCGCTTAAGAGTTCTAAGTCGAATGTGTATCGTGACATTGGTGGTAG 1133
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 GAAGCTTTATAGGCCGCTTAAGAGTTCTAAGTCGAATGTGTATCGTGACATTGGTGGTAG 1176
Query 1134 TGGAAGTAGAACAGGGAATTTCAAGAAAGAGAGGGATAATGAGAATCCTGAGGTGAAACA 1193
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1177 TGGAAGTAGAACTGGGAATTTCAAGAAGGAGAGGGATAATGAGAATCCTGAGGTGAAACA 1236
Query 1194 TGAGCTTAAGGTTAATTGCGCGGAAGCTTTGTGGATGCTTGCTAGAGGGAATGTAGCGAA 1253
|||||||||||| ||||| |||||||||||||||||||||||| |||| |||||||||||
Sbjct 1237 TGAGCTTAAGGTCAATTGTGCGGAAGCTTTGTGGATGCTTGCTCGAGGAAATGTAGCGAA 1296
Query 1254 TAGTAGGAGGATAACGGAGACAAAAGGGCTGCTTTCTTTGGCGAAGATAGTGGAAAAAGA 1313
|||||||||||| ||||| || |||||| ||||||||||||||||||| |||||||| ||
Sbjct 1297 TAGTAGGAGGATTACGGAAACGAAAGGGTTGCTTTCTTTGGCGAAGATTGTGGAAAAGGA 1356
Query 1314 AGTTGGTGAATTGCAATACAATTGTTTGATGACTCTGATGGAGATAACCGCTGCTGCAGA 1373
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1357 AGTTGGTGAATTGCAATATAATTGTTTGATGACTCTGATGGAGATAACCGCTGCTGCGGA 1416
Query 1374 GTCGAATGCTGACCTTAGACGAGCAGCTTTCAAGACTAATTCCCCGGCTGCCAAAGCTGT 1433
||||| ||||||||||||||| ||||| |||||||||||||| || ||||| ||||||||
Sbjct 1417 GTCGAGTGCTGACCTTAGACGGGCAGCATTCAAGACTAATTCTCCTGCTGCTAAAGCTGT 1476
Query 1434 TATTGACCAGATGTTATGGATAATCAAAGAAGTCGATAGCCCAATTTTGAAAATCCCAGC 1493
|||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 1477 TATTGATCAGATGTTATGGATAATCAAAGATGTCGATAGCCCGATTTTAAAAATCCCAGC 1536
Query 1494 GATTCAATCTATCGGATCATTGGCACGGACATTCCCAGCAAGAGAAACAAGAATGATACA 1553
||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 1537 GATTCAATCTATCGGGTCATTGGCACGGACATTCCCGGCAAGAGAAACGAGAATGAT-CA 1595
Query 1554 -GCCATTGGTGGAGAAACTCGGTAGTAGCAACCAAGAAGTGGCGATAACAGCTGTAATAT 1612
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1596 AGCCATTGGTTGAGAAACTCGGTAGTAGCAACCAAGAAGTGGCTATAACAGCTGTAATTT 1655
Query 1613 CATTGCAGAAATTCGTCTGTCCCGAGAACTTCCTCTGCGCAGAGCACTCGAAGAACATAA 1672
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1656 CATTGCAGAAATTCGTATGTCCCGAGAACTTCCTCTGCGCAGAGCACTCGAAGAACATAA 1715
Query 1673 TCGAATACGGGGCAATCCCGTTACTGATGAAACTGATAAGAAACTTCGAGCAGCAAATGC 1732
|||||||||| |||||||||||| |||||||||| ||||| ||| |||||||||||||||
Sbjct 1716 TCGAATACGGAGCAATCCCGTTATTGATGAAACTAATAAGGAACGTCGAGCAGCAAATGC 1775
Query 1733 AGTTACAGTGTCTAGCTCTGCTCTGTTACCTTTCAATAAACGCTAGTAACCACGAGCAAT 1792
||||||||||||||||| | ||||| |||||||| | || || ||||||||| | || |
Sbjct 1776 AGTTACAGTGTCTAGCTTTACTCTGCTACCTTTCCGTGAATGCCAGTAACCACCAACAGT 1835
Query 1793 TGGAACAGGCCAAGGTTTTGACTGTGCTCGAAGGTGCAGAACGTTTGGCGGGTCTGCAGA 1852
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1836 TGGAACAGGCCAAGGTTTTGACGGTGCTCGAAGGTGCAGAACGTTTGGCGGGTCTGCAGA 1895
Query 1853 ATATGGAGTTGAGAGAACTTGTGTCGAAAGCGATATATCAACTAAGTCTATACAATGCAG 1912
||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 1896 ATATGGAGTTGAGAGAACTCGTGTCGAAAGCTATATATCAGCTAAGTCTATACAATGCAG 1955
Query 1913 GAAGTCACAGTCAAATGCTAACGTATGTTGGTCCTTAAAGCAAGATACAGTTTTTAGTGT 1972
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1956 GAAGTCACAGTCAAATGCTATCGTATGTTGGTCCTTAAAGCAAGATACAGTTTATAGTGT 2015
Query 1973 GTTGGATTCATATGGTATAGGCAGAGATTCTTCATTGTTAGATTTACAGAGAAAGAGCAA 2032
||||||||||||| ||| || ||| || ||||||||||||||||||||||||||||||||
Sbjct 2016 GTTGGATTCATATCGTACAGACAG-GAATCTTCATTGTTAGATTTACAGAGAAAGAGCAA 2074
Query 2033 AAA-CAGAATCTCTCATTTTGTGATCGTTGATTGATCAAATCCTTCATTGTAAATGAAAT 2091
||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||
Sbjct 2075 AAAGCAGAATCTCTCATTTTGTGATCGCTGATTGATCAAATCCTTCATTGTATATGGAAC 2134
Query 2092 GGA-ACAAAGATAATTAGATGGAAGGGTAATAAAACTAGCTTTGCTCTCTCTGGTTTGCT 2150
| | |||||||||||||| ||||||||||||||||||||||||||||||| || || |||
Sbjct 2135 G-ACACAAAGATAATTAGGTGGAAGGGTAATAAAACTAGCTTTGCTCTCTGTGATTCGCT 2193
Query 2151 TGGTTATGA 2159
|| |||||
Sbjct 2194 AGGCTATGA 2202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107077762485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5