BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484425
Length=1631
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26610.1 | Symbols: | Pectin lyase-like superfamily protein... 2514 0.0
> AT3G26610.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:9776960-9780499 FORWARD LENGTH=1710
Length=1710
Score = 2514 bits (1361), Expect = 0.0
Identities = 1547/1636 (95%), Gaps = 15/1636 (1%)
Strand=Plus/Plus
Query 1 AAAACATAACA-AAAGGTTATAAGAAAATATGAAGACAGTAAAGAGTTTACCTCTTTTAG 59
||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 38 AAAACATAACACAAA-GTTATAAGAAAATATGAAGACAGTAAAGAGTTTACCTATTTTAG 96
Query 60 CTATGCTACTCGGTGTCATAATTGTAGCCGCAGCCATCTCCACTATCTCCGTCGAGGGCC 119
||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct 97 CTATGCTACTCGGTGTCATAATTGTAGCCGCCGCCATCTCCACCGTCTCCGTTGAGGGCC 156
Query 120 GTAAACATCAGGTAAAGAAGATTAAACCCAAACACCGTCGTCATTCCAAAAACACCCCTA 179
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 157 GTAAACATCACGTAAAGAAGATTAAACCCAAACACCGTCGTCATTCCAAAAACACTCCTA 216
Query 180 CCGGCTCACCGGCACCAGCTCCTTACCCGTCCACCCACGAGGGCGTTTTCAACATTATCT 239
||||||| |||||||| || ||||||||||||||| |||||||||||||||||||| |||
Sbjct 217 CCGGCTCTCCGGCACCCGCACCTTACCCGTCCACCAACGAGGGCGTTTTCAACATTTTCT 276
Query 240 CCTTTGGTGCCAAGGGTGATGGAGTCTCCGACGACTCAAAGGCATTGGTAAGAGCGTGGA 299
||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 277 CCTATGGTGCCAAGGGTGATGGAGTCTCTGACGACTCAAAGGCATTGGTCGGAGCGTGGA 336
Query 300 AGGCGGCTTGTGAAGTTGTCGGAGGGAAGGTGGAGATTCCGGCAGGGAAACAGTTTTTGG 359
|||| |||||| |||| ||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 337 AGGCAGCTTGTAAAGTGGTCGGAGGGAAAGTGGAGATTCCGGCAGGGACACAGTTTTTGG 396
Query 360 TGAAGGCAGTGACACTGCAAGGGCCGTGCAAGGAGGAGACGGTGGTTCAAATAGAAGGAA 419
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 397 TGAAGGCAGTGACACTGCAAGGGCCGTGTAAGGAGGAGACGGTGGTTCAAATAGAAGGAA 456
Query 420 CCTTAGTGGCTCCAGAGAAGATAGGGTCATGGCCTAAGTCAAGCTTGTTTCAATGGCTTA 479
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 457 TCTTAGTGGCTCCAGAGAAGATAGGGTCATGGCCTAATTCAAGCTTGTTTCAATGGCTTA 516
Query 480 ACATCAAATGGGTCAGTCATGTGACCATCCAAGGCTCAGGGACTCTTAACGGTCGTGGCT 539
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 517 ACTTCAAATGGGTCAGTCATTTGACCATCCAAGGCTCAGGGACTCTTAACGGTCGTGGCT 576
Query 540 CTAACTGGTGGAACTTAGACACTTATCAAATTCAGACAAGAAATAAGTATATCCCACCAA 599
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 577 ATAACTGGTGGAACTTAGACACTTATCAAACTCAGACGAGAAATAAGTATATCCCACCAA 636
Query 600 TGAAACCAACGGCACTTAGATTTTATGC-AGCTCATAACGTGACAGTCCGTGATATAAGT 658
||||||||||||||||| | |||||| | || | ||||||| || ||||||||||||||
Sbjct 637 TGAAACCAACGGCACTTCGGTTTTATTCAAG-TAATAACGTCACGGTCCGTGATATAAGC 695
Query 659 ATCGTGAACAGTCCACTGTGCCATTTGAAGTTCGATGATTCCGACGGAGTCAAAGTCAAC 718
||||||||||||||| | || |||||||||||||||||||| || |||||||||||||||
Sbjct 696 ATCGTGAACAGTCCATTATGTCATTTGAAGTTCGATGATTCGGATGGAGTCAAAGTCAAC 755
Query 719 AACATAACGATTTCTTCGCCGGAGAACAGCCCTAACACCGACGGCATCCACCTCCAGAAC 778
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 756 AACATTACGATCTCTTCGCCGGAGAATAGCCCTAACACCGACGGCATCCACCTCCAGAAC 815
Query 779 ACACGTAACGTCGAGATTCAACACTCTAACATCGCTTGTGGAGATGACTGTGTATCCATT 838
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 816 ACACGTAACGTCGAGATTCAACACTCCAACATCGCTTGTGGAGATGACTGTGTATCCATT 875
Query 839 CAAACTGGTTCCTCCAATGTACATATTCACCACATCAATTGTGGCCCTGGCCATGGCATT 898
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 CAAACCGGCTCCTCCAATGTACATATTCACCACATCAATTGTGGCCCTGGCCATGGCATT 935
Query 899 AGCATAGGTGGACTAGGGAAAGATAAGAGTGTGGCATGTGTTTCTGATATCATTGTAGAG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 AGCATAGGTGGACTAGGGAAAGATAAGAGTGTGGCATGTGTTTCTGATATCATTGTAGAG 995
Query 959 GATATCTCTATACAAAACACTCTTGCTGGTGTTCGAATCAAGACTTGGCAGGGAGGATTA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 GATATCTCTATACAAAACACTCTTGCTGGTGTTCGAATCAAGACTTGGCAGGGAGGATTA 1055
Query 1019 GGAGTCGTCAAGAACCTAACATTTTCGAACATTCAAGTAACGGACGTGAAGGTACCGATA 1078
|| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||
Sbjct 1056 GGGGTCGTCAAGAACCTAACGTTTTCGAACATTCAAGTAAAGGACGTGAAGGTACCAATA 1115
Query 1079 GTAATAGACCAATATTACTGCGACAAGTCCAAGTGTAAGAATCAGACCCGTGCTGTGTCG 1138
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1116 GTAATCGACCAATATTACTGCGACAAGTCCAAGTGTAAGAATCAGACGCGTGCAGTGTCG 1175
Query 1139 ATTTCCGGTATTAAATACAACAACATTGTCGGTAGTTTCACGGTGCAACCAGTACGTATC 1198
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1176 ATTTCCGGCGTTAAATACAACAACATTGTCGGTAGTTTCACGGTGCAACCGGTACGTATT 1235
Query 1199 GCATGCAGCAACAACGTGCCATGCATGGACGTGGATCTTATGGATATAAGGCTAAGACCT 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1236 GCATGCAGCAACAACGTGCCATGCATGGACGTGGATCTTATGGATATAAGGCTACGACCT 1295
Query 1259 TCCGGAGGAATCAGAGGGTTACAAACTCATCAGCAACAACAAGCTTTGTGTTGGAACTCG 1318
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 TCTGGAGGAATCAGAGGGTTACAAACTCATCAGCAACAACAAGCTTTGTGTTGGAACTCA 1355
Query 1319 TACGGCAAAACACAAGGGCCTTTGGTTCCTTCAAGTATTGGCTATTGCTTGAGGAAGAGT 1378
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1356 TATGGCAAAACACAAGGGCCTTTGGTTCCTTCTAGCATTGGCTATTGCTTGAGGAAGAGT 1415
Query 1379 AATATTGGTGGTTATTATTCACAAAAAGTTTCTCGGTCCTATGACAAGATTTGCCCTTCA 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 AATATTGGTGGTTATTATTCACAAAAAGTTTCTCGGTCCTATGACAAGATTTGCCCTTCA 1475
Query 1439 TAAAAG-TATAAA-AATAAATTCTAG-ATCAGTAATGCCATGCATCGATTCTAGGTATCT 1495
||||| | |||| || ||| ||| ||||||||||| | | |||||||||||||||
Sbjct 1476 TAAAACCT-TAAATAAAAAA--CTAATATCAGTAATGCTA--C--CGATTCTAGGTATCT 1528
Query 1496 ATGTTTTACTATATTTGCTATTTAATTTGTGTTTATTTTGGGAGGTCATGATGTATCCTT 1555
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1529 ATGTTT-ACTATATTTGCTATTTAATTTGTGTTTATTTTGGGATGTCATGATGTATCCTT 1587
Query 1556 TTGCTTCCCTTCTGCAACTTTTTGTGGATGTGAGAAGGTGATGGCTATTGCATCAGCTTT 1615
||||||||| |||||||||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct 1588 TTGCTTCCCCTCTGCAACTTTTTGTGGATGTGAGAAGGTGGTGGCTTTTGTATCAGCTTT 1647
Query 1616 TTATTTTATTCCATAG 1631
||||||| ||||||||
Sbjct 1648 TTATTTTGTTCCATAG 1663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80571874725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5