BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484426
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26618.1 | Symbols: ERF1-3 | eukaryotic release factor 1-3 |... 2433 0.0
AT1G12920.1 | Symbols: ERF1-2 | eukaryotic release factor 1-2 |... 1517 0.0
> AT3G26618.1 | Symbols: ERF1-3 | eukaryotic release factor 1-3
| chr3:9788605-9790351 FORWARD LENGTH=1581
Length=1581
Score = 2433 bits (1317), Expect = 0.0
Identities = 1455/1521 (96%), Gaps = 12/1521 (1%)
Strand=Plus/Plus
Query 10 GCGTGCTCTGTCTTAAGCTTGAAGGGGGGAGAACATGGCGGACCAAGAATCAGATAAGAA 69
||||||||||| ||||||||||||| || | |||||||| ||||||||||||||||||||
Sbjct 50 GCGTGCTCTGTTTTAAGCTTGAAGGAGGAAAAACATGGCAGACCAAGAATCAGATAAGAA 109
Query 70 CATCGAGATTTGGAAGATTAAGAAGCTAATCAAAGGACTTGAAACCGCTAGAGGTAATGG 129
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 110 CATTGAGATTTGGAAGATTAAGAAGCTAATCAAAGGACTTGAAACCGCAAGAGGTAATGG 169
Query 130 AACAAGTATGATCTCTCTTATTATGCCTCCTAGAGATCAAGTAGCTCGTGTTACTAAGAT 189
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 170 AACAAGTATGATCTCTCTTATAATGCCTCCTAGAGATCAAGTAGCTCGTGTCACTAAGAT 229
Query 190 GCTTGCTGATGAATACGGAACCGCCTCAAACATTAAGAGTCGAGTGAATCGTCAATCTGT 249
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 230 GCTTGCTGATGAATACGGAACCGCCTCAAACATCAAGAGTCGAGTGAATCGTCAATCTGT 289
Query 250 TTTATCTGCTATTACTTCTGCTCAACAAAGATTGAAGCTTTACAATAAAGTTCCTCCAAA 309
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 290 TTTATCTGCCATTACTTCTGCTCAACAAAGATTGAAGCTTTACAACAAAGTTCCTCCGAA 349
Query 310 TGGTCTTGTTCTGTATACTGGAACCATTGTTACTGATGATGGTAAAGAGAAGAAAGTGAC 369
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TGGTCTTGTTCTCTATACTGGAACCATTGTTACTGATGATGGTAAAGAGAAGAAAGTGAC 409
Query 370 TATTGATTTCGAGCCTTTTAAACCGATTAATGCTTCGTTGTATTTGTGTGACAATAAGTT 429
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 GATTGATTTCGAGCCTTTTAAACCGATTAATGCTTCGTTGTATTTGTGTGACAATAAGTT 469
Query 430 TCATACCGAGCCTTTGAATGAGCTTTTGGAGTCTGATGATAAGTTTGGTTTCATTGTTAT 489
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 CCACACCGAGCCTTTGAATGAGCTTTTGGAGTCTGATGATAAGTTTGGTTTCATTGTTAT 529
Query 490 GGATGGAAATGGAACTTTGTTTGGTACTTTGAGTGGGAATACAAGAGAGGTTCTTCACAA 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 530 GGATGGAAATGGAACTTTGTTTGGTACTTTGAGTGGGAATACAAGAGAGGTTCTTCATAA 589
Query 550 GTTCACTGTTGATCTTCCTAAAAAGCACGGAAGAGGAGGACAATCTGCGTTGCGATTTGC 609
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GTTCACTGTCGATCTTCCGAAAAAGCACGGAAGAGGAGGACAATCTGCGTTGCGATTTGC 649
Query 610 TCGTCTTAGGATGGAGAAGAGACATAACTATGTGAGGAAAACCGCGGAGCTTGCCACTCA 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 TCGTCTTAGGATGGAGAAGAGACATAACTATGTGAGGAAAACCGCGGAGCTTGCCACTCA 709
Query 670 GTTTTACATTAATCCAGCTACGAGTCAGCCCAATGTCTCTGGTCTTATACTTGCTGGTTC 729
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 710 GTTTTACATTAATCCAGCTACGAGTCAGCCTAATGTCTCTGGTCTTATACTTGCTGGTTC 769
Query 730 AGCGGATTTCAAGACTGAGCTAAGTCAATCAGAACTGTTTGATCCTCGTCTTCAAGCTAA 789
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 AGCGGATTTTAAGACCGAGCTAAGTCAATCAGAACTGTTTGATCCTCGTCTTCAAGCTAA 829
Query 790 GATATTGAATGTGGTTGATGTTTCTTACGGAGGAGAGAATGGTTTCAACCAAGCAATTGA 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 GATATTGAATGTGGTTGATGTTTCTTACGGAGGAGAGAATGGTTTCAACCAAGCAATTGA 889
Query 850 GCTGTCTGCTGAGATTCTATCTAATGTGAAGTTCATACAGGAAAAGAAATTGATTGGGAA 909
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 890 GCTGTCTGCTGAGATTCTATCTAATGTGAAGTTCATACAAGAAAAGAAATTGATTGGGAA 949
Query 910 GTACTTTGAGGAGATCAGTCAAGACACTGGGAAATATGTTTTCGGTGTTGAGGATACTTT 969
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 950 GTACTTTGAGGAGATTAGTCAAGACACTGGGAAATATGTTTTCGGTGTTGAAGATACTTT 1009
Query 970 AAAGGCTCTAGAAATGGGTGCTGTTGAAACTCTTATAGTGTGGGAGAATCTAGATATCAA 1029
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1010 AAAGGCTCTGGAAATGGGTGCTGTTGAGACTCTTATAGTGTGGGAGAATCTAGATATTAA 1069
Query 1030 TAGGTATGAGTTAAAAAACAACACGACCGGAGAAATTGTGATTAAGCATTTGGGAAAAGA 1089
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1070 TAGGTATGAGTTAAAGAACAACACGACCGGAGAAATCGTGATTAAGCATTTGGGAAAGGA 1129
Query 1090 TCAAGAGAACAACCAAAGCAATTTCCATGATGCAGAGACCAATGCAGAGTTAGAAGTTCA 1149
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1130 TCAAGAGAACAACCAAAGCAATTTCCATGATGCAGAGACTAATGCAGAGTTAGAAGTTCA 1189
Query 1150 GGAGAAGATGCCTCTGCTTGAATGGTTTGCTAACGAGTATAAACGTTTTGGTTGTACACT 1209
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1190 GGAGAAGATGCCTCTGCTTGAATGGTTTGCTAACGAATATAAACGTTTTGGTTGTACACT 1249
Query 1210 TGAGTTTGTGACTAACAAGTCCCAAGAAGGATCACAATTTTGCAGAGGCTTTGGCGGAAT 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1250 TGAGTTTGTGACTAACAAGTCCCAAGAAGGATCACAATTTTGCAGAGGCTTTGGCGGTAT 1309
Query 1270 CGGTGGATTGTTGCGATACCAGCTTGATATGAGGACGTTTGATGAATTATCGGATGGGGA 1329
|||||||||||||| |||||||||||||||||||| || ||||||||||| ||||| ||
Sbjct 1310 TGGTGGATTGTTGCGGTACCAGCTTGATATGAGGACATTCGATGAATTATCCGATGGTGA 1369
Query 1330 TGTTTATGAAGATTCCGATTAAGTAAGAGAAAATGTGGTTTAAGATCTGAAGAAGGATTT 1389
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 AGTTTATGAAGACTCAGATTAAGTAAGAGAAAATGTGGTTTAAGATCTGAAGAAGGATTT 1429
Query 1390 GAAGTTTGGGGAAAAAA-GAAAGACTCA-GAACTTTTGttttttttACCTTGTCTGTCTC 1447
||||||||||||||||| |||||||| | |||||||||||| | ||| |||||| ||||
Sbjct 1430 GAAGTTTGGGGAAAAAAAGAAAGACT-ATGAACTTTTGTTTGATATACTTTGTCTCTCTC 1488
Query 1448 TATTATCTTCCATTTTCATGCTGCCTCTTCTTAAGTTTTTCTGAAACACTTTTGTTAAAA 1507
|||||||||| | || || || | || | |||||||||||||||| || ||||||||
Sbjct 1489 TATTATCTTC--TGTT---GCCGC-T-TT-T-AAGTTTTTCTGAAACAGTTATGTTAAAA 1539
Query 1508 TGTATGAAAAATTTGAGCTTC 1528
||||||| |||||||||||||
Sbjct 1540 TGTATGAGAAATTTGAGCTTC 1560
> AT1G12920.1 | Symbols: ERF1-2 | eukaryotic release factor 1-2
| chr1:4396348-4398193 REVERSE LENGTH=1656
Length=1656
Score = 1517 bits (821), Expect = 0.0
Identities = 1148/1307 (88%), Gaps = 18/1307 (1%)
Strand=Plus/Plus
Query 54 AAGAATCAGATAAGAACATCGAGATTTGGAAGATTAAGAAGCTAATCAAAGGACTTGAAA 113
||||| | |||| |||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 152 AAGAAGCGGATACGAACATCGAGATCTGGAAGATTAAGAAACTAATCAAGGGACTTGAAT 211
Query 114 CCGCTAGAGGTAATGGAACAAGTATGATCTCTCTTATTATGCCTCCTAGAGATCAAGTAG 173
| ||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||
Sbjct 212 CAGCTAGAGGTAATGGAACGAGTATGATCTCTCTTATTATGCCTCCTCGTGATCAAGTAT 271
Query 174 CTCGTGTTACTAAGATGCTTGCTGATGAATACGGAACCGCCTCAAACATTAAGAGTCGAG 233
||||||| || |||||||||| ||||||||| ||||| || |||||||||||||||||||
Sbjct 272 CTCGTGTCACAAAGATGCTTGGTGATGAATATGGAACTGCTTCAAACATTAAGAGTCGAG 331
Query 234 TGAATCGTCAATCTGTTTTATCTGCTATTACTTCTGCTCAACAAAGATTGAAGCTTTACA 293
| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 332 TCAATCGTCAATCTGTTTTGTCTGCCATTACTTCTGCTCAACAAAGGTTGAAGCTTTACA 391
Query 294 ATAAAGTTCCTCCAAATGGTCTTGTTCTGTATACTGGAACCATTGTTACTGATGATGGTA 353
| || |||||| | |||||||||||||| ||||| || |||||||||| |||||| ||||
Sbjct 392 ACAAGGTTCCTACTAATGGTCTTGTTCTCTATACCGGCACCATTGTTAATGATGACGGTA 451
Query 354 AAGAGAAGAAAGTGAC-TATTGATTTCGAGCCTTTTAAACCGATTAATGCTTCGTTGTA- 411
|||||||||| ||||| | ||||||||||||| |||| |||||||||||||| |||||
Sbjct 452 AAGAGAAGAAGGTGACGT-TTGATTTCGAGCCCTTTAGGCCGATTAATGCTTCCTTGTAC 510
Query 412 TTTGTGTGACAATAAGTTTCATACCGAGCCTTTGAATGAGCTT-TTGGAGTCTGATGATA 470
|| |||||||| ||||| ||||| ||| | ||||| |||||| || ||||||||||| |
Sbjct 511 CTT-TGTGACAACAAGTTCCATACTGAGGCATTGAACGAGCTTCTT-GAGTCTGATGACA 568
Query 471 AGTTTGGTTTCATTGTTATGGATGGAAATGGAACTTTGTTTGGTACTTTGAGTGGGAATA 530
||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||
Sbjct 569 AGTTTGGTTTCATTGTTATGGATGGTAATGGGACACTGTTTGGAACTTTGAGTGGGAATA 628
Query 531 CAAGAGAGGTTCTTCACAAGTTCACTGTTGATCTTCCTAAAAAGCACGGAAGAGGAGGAC 590
| |||||||||||||| ||||| ||||||||||| || || |||||||||||||||||||
Sbjct 629 CTAGAGAGGTTCTTCATAAGTTTACTGTTGATCTCCCGAAGAAGCACGGAAGAGGAGGAC 688
Query 591 AATCTGC-GTTGCGATTTGCTCGTCTTAGGATGGAGAAGAGACATAACTATGTGAGGAAA 649
| ||||| || || ||||| ||||||||||||||||||||||| || ||||| ||||||
Sbjct 689 AGTCTGCACTT-CGTTTTGCCCGTCTTAGGATGGAGAAGAGACACAATTATGTTAGGAAA 747
Query 650 ACCGCGGAGCTTGCCACTCAGTTTTACATTAATCCAGCTACGAGTCAGCCCAATGTCTCT 709
||||| |||||||| || ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 748 ACCGCTGAGCTTGCTACACAGTTTTACATCAATCCAGCTACGAGTCAGCCTAATGTCTCT 807
Query 710 GGTCTTATACTTGCTGGTTCAGCGGATTTCAAGACTGAGCTAAGTCAATCAGAACTGTTT 769
||||| || |||||||||||||| |||||||| |||||||| ||||||||||| |||||
Sbjct 808 GGTCTGATCCTTGCTGGTTCAGCTGATTTCAAAACTGAGCTCAGTCAATCAGAGTTGTTT 867
Query 770 GATCCTCGTCTTCAAGCTAAGATATTGAATGTGGTTGATGTTTCTTACGGAGGAGAGAAT 829
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 868 GATCCTCGTCTTCAAGCTAAGATATTGAATGTTGTTGATGTTTCTTACGGAGGTGAAAAC 927
Query 830 GGTTTCAACCAAGCAATTGAGCTGTCTGCTGAGATTCTATCTAATGTGAAGTTCATACAG 889
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 928 GGTTTCAACCAAGCGATTGAGCTGTCTGCTGAGATTCTATCCAATGTGAAGTTCATACAG 987
Query 890 GAAAAGAAATTGATTGGGAAGTACTTTGAGGAGATCAGTCAAGACACTGGGAAATATGTT 949
|| |||||| ||||||||||||||||||||||||| |||||||| || |||||||| |||
Sbjct 988 GAGAAGAAACTGATTGGGAAGTACTTTGAGGAGATAAGTCAAGATACCGGGAAATACGTT 1047
Query 950 TTCGGTGTTGAGGATACTTTAAAGGCTCTAGAAATGGGTGCTGTTGAAACTCTTATAGTG 1009
|||||||| ||||||||| ||||||||||||||||||||||| | ||||| ||||| |||
Sbjct 1048 TTCGGTGTGGAGGATACTCTAAAGGCTCTAGAAATGGGTGCTATCGAAACCCTTATCGTG 1107
Query 1010 TGGGAGAATCTAGATATCAATAGGTATGAGTTAAAAAACAACACGACCGGAGAAATTGTG 1069
||||||||||| || || || ||||||||| |||| |||| ||||| |||||||| |||
Sbjct 1108 TGGGAGAATCTGGACATAAACAGGTATGAGCTAAAGAACAGTACGACAGGAGAAATGGTG 1167
Query 1070 ATTAAGCA-TTTGGGAAAAGATCAAGAGAAC--A-ACCAAAGCAATTTCCATGATGCAGA 1125
| || || ||||||||| ||||||||| | | || || |||| ||||||||| ||||
Sbjct 1168 GTGAAACACTTTGGGAAA-GATCAAGAGT-CTGATAC-AA-GCAACTTCCATGATTCAGA 1223
Query 1126 GACCAATGCAGAGTTAGAAGTTCAGGAGAAGATGCCTCTGCTTGAATGGTTTGCTAACGA 1185
||| || || ||| ||||||| ||||||||||||||||| || ||||||||||| || ||
Sbjct 1224 GACTAACGCGGAGCTAGAAGTACAGGAGAAGATGCCTCTACTCGAATGGTTTGCAAATGA 1283
Query 1186 GTATAAACGTTTTGGTTGTACACTTGAGTTTGTGACTAACAAGTCCCAAGAAGGATCACA 1245
||| |||||||| || || || |||||||||||||||||||| ||||||||||| |||||
Sbjct 1284 GTACAAACGTTTCGGCTGCACTCTTGAGTTTGTGACTAACAAATCCCAAGAAGGGTCACA 1343
Query 1246 ATTTTGCAGAGGCTTTGGCGGAATCGGTGG-ATTGTTGCGATACCAGCTTGATATGAGGA 1304
||||||||||| ||||| || || ||||| || ||| || ||||||||||| |||||||
Sbjct 1344 GTTTTGCAGAGGTTTTGGTGGGATTGGTGGTAT-GTTACGTTACCAGCTTGACATGAGGA 1402
Query 1305 CGTTTGATGAATTATCGGATGGGGATGTTTATGAAGATTCCGATTAA 1351
| |||||||| ||||| ||| || ||||| |||||||| ||||||
Sbjct 1403 CATTTGATGAGTTATCAGATACTGAAGTTTACGAAGATTCTGATTAA 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75401218590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5