BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484429
Length=1565
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2322 0.0
> AT3G26630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:9791371-9792985 REVERSE LENGTH=1615
Length=1615
Score = 2322 bits (1257), Expect = 0.0
Identities = 1478/1581 (93%), Gaps = 29/1581 (2%)
Strand=Plus/Plus
Query 1 TTATCGTTAATCCATGGCGGCTCCGTCGCCGTCTTCGCCACCAAACCTTCTCTCTCCTCC 60
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 34 TTATCGTTAATCCATGGCGGCTCCGTCGCCGTCTTCACCACCAAACCTCCTCTCTCCTCC 93
Query 61 ACCATTCCGATCTCCCGAAGCTTCTTACTTTCTCCGAACTTGTTCAAATTTCTCTCAATT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 94 ACCATTCCGATCTCCCGAAGCTTCTTACTTTCTCCGAACTTGTTCAAATTTCTCTCAATT 153
Query 121 GAAACAAATTCACACCAAAATCATCAAACACAATCTCACCAACGATCAATTACTAGTTCG 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 154 GAAACAAATTCACACCAAAATCATCAAACACAATCTCACCAACGATCAGTTACTAGTTCG 213
Query 181 TCAGCTCATAAGTGTTTCTTCTTCCTTCGGAGAAACCCGGTACGCTTCTCTCGTCTTTAA 240
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 214 TCAGCTCATAAGTGTTTCTTCTTCCTTCGGAGAAACCCAATACGCTTCTCTCGTCTTTAA 273
Query 241 TCAACTTCAATCTCCTTCTACGTTTACTTGGAACCTTATGATACGATCTCTCTCACTCAA 300
||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| | ||
Sbjct 274 TCAACTTCAATCTCCTTCTACTTTTACCTGGAACCTTATGATAAGATCTCTCTCTGTTAA 333
Query 301 TCACAAGCCTCGTGAAGCTCTTCTTCTCTTTATTCTTATGCT---CTCTCATCAA-CCTC 356
|||||| |||||||||||||||||||||||||| |||||| | |||||||||| || |
Sbjct 334 TCACAAACCTCGTGAAGCTCTTCTTCTCTTTATCCTTATGATGATCTCTCATCAATCC-C 392
Query 357 AGTTTGATAAATTCACTTTCCCTTTTGTTATCAAAGCTTGTCTCGCTTCTTCTTCTCTTC 416
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 393 AGTTTGATAAATTCACTTTCCCTTTTGTTATCAAAGCTTGTCTCGCTTCTTCGTCGATTC 452
Query 417 GTTTAGGAACTCAAGTTCATGGTTTAGCTATTAAAGCTGGGTTTTTTAATGATGTGTTCT 476
||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 453 GTTTAGGTACCCAAGTTCATGGTTTAGCTATTAAAGCTGGGTTTTTTAATGATGTCTTCT 512
Query 477 TCCAAAACACTCTTATGGATCTTTACTTTAAGTGTGGGAAACCAGATTGTGGACGTAAGG 536
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 513 TCCAAAACACTCTCATGGATCTTTACTTTAAGTGTGGGAAACCAGATAGTGGACGTAAGG 572
Query 537 TGTTTGATAAAATGCCTGGGAGAAGTATTGTTTCATGGACTACTATGCTTTATGGTCTTG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 TGTTTGATAAAATGCCTGGGAGAAGTATTGTTTCATGGACTACTATGCTTTATGGTCTTG 632
Query 597 TATCTAATTCTCAGTTAGATTCTGCAGAGATTGTATTCAATCAAATGCCAATGAGAAATG 656
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 633 TCTCCAATTCTCAGTTAGATTCTGCAGAGATTGTATTCAATCAAATGCCAATGAGAAACG 692
Query 657 TTGTTTCATGGACTGCGATGATCACTGCTTATGTTAAGAACCGTAGACCCGATGAGGCGT 716
|||||||||||||||| ||||| || ||||| |||||||||||||||||||| |||||||
Sbjct 693 TTGTTTCATGGACTGCAATGATTACGGCTTACGTTAAGAACCGTAGACCCGACGAGGCGT 752
Query 717 TTCAGCTCTTTAGGAGAATGCAGGTTGATGATGTTAAGCCGAATGAGTTTACGATTGTTA 776
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 753 TTCAGCTCTTTAGGAGAATGCAGGTTGATGATGTCAAGCCTAATGAGTTTACGATTGTTA 812
Query 777 ATTTGTTGCAAGCTTCTACTCAGTTAGGAAGCTTGTCTATGGGAAGATGGGTTCATGACT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 ATTTGTTGCAAGCTTCTACTCAGTTAGGAAGCTTGTCTATGGGAAGATGGGTTCATGACT 872
Query 837 ATGCTCACAAAAATGGTTTTGTGCTTGATTGTTTTCTTGGAACCGCTTTGATCGATATGT 896
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 873 ATGCTCATAAAAACGGTTTTGTGCTTGATTGTTTCCTTGGAACCGCTTTGATCGATATGT 932
Query 897 ATAGCAAATGTGGAAGCTTGCAGGATGCAAGGAAAGTCTTTGATGTGATGCAGAGTAAGA 956
||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||
Sbjct 933 ATAGCAAATGTGGAAGCTTGCAGGACGCAAGGAAAGTATTTGACGTGATGCAGGGTAAGA 992
Query 957 GTTTAGCGACTTGGAATTCGATGATCACTAGCTT-GGGAGTACATGGATGTGGAGAAGAA 1015
|||||||||||||||| ||||||||||||||||| ||| |||||||||||||| |||||
Sbjct 993 GTTTAGCGACTTGGAACTCGATGATCACTAGCTTAGGG-GTACATGGATGTGGTGAAGAG 1051
Query 1016 GCTTTGTCTCTGTTTGAAGAGATGGAAGAAGAAGCAAGTGCAGAACCAGATGCTATCACG 1075
|||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 1052 GCTTTGTCTCTGTTTGAAGAGATGGAAGAAGAAGCAAGCGTAGAACCAGACGCTATCAC- 1110
Query 1076 TTT-GTTGGTGTCTTATCCGCTTGTGCAAATACCGGGAATGTAAAGGATGGTTTGAGGTA 1134
||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 1111 TTTCGTTGGTGTCTTATCCGCTTGTGCGAATACTGGAAATGTAAAGGATGGTTTGAGGTA 1170
Query 1135 CTTCACACGGATGATCCAAGTTTACGGTATCTCACCTATTCGGGAACATAATGTTTGTAT 1194
||| || ||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1171 CTTTACTCGGATGATCCAAGTTTACGGTATCTCACCTATTCGAGAACATAATGCTTGTAT 1230
Query 1195 GATCCAATTGTTGGAGCAAGCTCTCGAAGTGGAAAAAGCTTC----T-GATT----CCAT 1245
||||||||||||||||||||| || || ||||| |||||||| | | || ||||
Sbjct 1231 GATCCAATTGTTGGAGCAAGCCCTTGAGGTGGAGAAAGCTTCAAACTTGGTTGAATCCAT 1290
Query 1246 GGATTCTGATCCAAACTTCAATTCTTCATTTGGTAATGAATACACAGATC-AAGTGAATG 1304
||||||||||||| ||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct 1291 GGATTCTGATCCAGACTTCAATTCTTCATTTGGTAATGAATACACGGATGGAA-TGAATG 1349
Query 1305 AAAGGCACGAAACTCCGAGCCAGCATCAAATTATGTTCTCCAAGTGGGATACAGGCCGAT 1364
||| | |||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1350 AAACGAACGAAACTCCGAGCCAACATCAAATTATGTTCACCAAGTGGGATACAGGCCGAT 1409
Query 1365 TTTGAAGGTTCAGTGTCTCTTGACATATATTTTTTCGTCCGTTAAACAGATTCATTGATC 1424
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1410 TTTGAAGGTTCAGTGTCTCTTGACATATATATTTTCGTCTATTAAACAGATTCATTGATC 1469
Query 1425 ATCTTTGTAACTATAAAAGAAAAGCTCCTGCAAAAGTAGTGTAATCCCATGTACTTGTAA 1484
||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1470 ATCTTTGTAACTATACAAGAAAAGCTCCTTCAAAAGTAGTGTAATGTCATGTACTTGTAA 1529
Query 1485 AGGGAATGGAGTTTAGATATGCTTAAGCAGTGAAAATAGTAAATTCGATTTGTAATAATG 1544
| ||||||| | || ||||||||| |||||||||||||||||||||||||| ||
Sbjct 1530 AAGGAATGG-G---AG-----CTTAAGCAGGGAAAATAGTAAATTCGATTTGTAATAGTG 1580
Query 1545 TCATGTATTTTGTAAACAGAT 1565
|||||||||||||||||||||
Sbjct 1581 TCATGTATTTTGTAAACAGAT 1601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77258638755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5