BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484430
Length=1115
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26640.1 | Symbols: LWD2 | Transducin/WD40 repeat-like super... 1779 0.0
AT1G12910.1 | Symbols: ATAN11, LWD1 | Transducin/WD40 repeat-li... 1122 0.0
> AT3G26640.1 | Symbols: LWD2 | Transducin/WD40 repeat-like superfamily
protein | chr3:9793220-9794457 FORWARD LENGTH=1238
Length=1238
Score = 1779 bits (963), Expect = 0.0
Identities = 1066/1116 (96%), Gaps = 5/1116 (0%)
Strand=Plus/Plus
Query 2 AGAAGAAGACGAAGCAGAGGAATCTAGGGTTTATGCTTTCATCGAAGCAACA-ATGGTAA 60
|||||||||||||||||||||||||||||||||||| | ||| ||||||| | ||||| |
Sbjct 6 AGAAGAAGACGAAGCAGAGGAATCTAGGGTTTATGC-TACATTGAAGCAA-AGATGGTTA 63
Query 61 CGAGCAGCGATCAAATCCAAAATGGTTCCGATGAGCAATCAAAAAGATCAGAGATTTACA 120
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 64 CGAGCAGCGATCAAATCCAAAATGGTTCTGAAGAGCAATCAAAAAGATCAGAGATTTACA 123
Query 121 CATACGAAGCACCATGGCAGATCTACGCAATGAATTGGAGCATTCGTCGAGACAAGAAGT 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 124 CATACGAAGCACCATGGCAGATCTACGCAATGAACTGGAGCATTCGTCGAGACAAGAAGT 183
Query 181 ATCGACTCGCAATCACAAGCCTCATCGAGCAATATCCAAATCGCGTCGAAATTGTTCAGC 240
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 184 ATCGGCTCGCAATCACAAGCCTCATCGAGCAATATCCGAATCGCGTCGAAATTGTTCAGC 243
Query 241 TTGATGAATCAAATGGTGAGATTCGATCAGATCCAAATCTTTGCTTCGAGCATCCTTACC 300
||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 244 TTGATGAATCAAATGGTGAGATTCGTTCAGATCCAAATCTCTGCTTCGAACATCCTTACC 303
Query 301 CACCAACGAAAACCAGTTTCATTCCCGATAAAGAATGTCAAAGACCCGATCTTTTAGCTA 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 304 CACCAACGAAAACCAGTTTCATACCCGATAAAGAATGTCAAAGACCCGATCTTTTAGCTA 363
Query 361 CTTCTAGTGATTTTCTTCGTTTATGGCGAATCTCTGATGATGAATCTCGTGTTGAGCTTA 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CTTCTAGTGATTTCCTTCGTTTATGGCGAATCTCTGATGATGAATCTCGTGTTGAGCTTA 423
Query 421 GGTCTTGTCTTAGTAGTGATAAGAATAATGAGTTTAGTGGTCCTATTACTTCATTTGATT 480
|||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||
Sbjct 424 AGTCTTGTCTTAGTAGTGATAAGAATAGTGAGTTTAGTGGTCCAATCACTTCATTTGATT 483
Query 481 GGAATGAAGCTGAGCCTAGACGAATTGGGACTTCTAGTATTGATACGACTTGTACTATTT 540
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 484 GGAATGAAGCTGAGCCTAGACGAATTGGTACTTCTAGTATTGATACCACTTGTACTATTT 543
Query 541 GGGATATAGAGCGTGAAGTTGTTGATACTCAGCTTATTGCTCATGATAAAGAGGTTTATG 600
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 544 GGGATATAGAGCGTGAAGTTGTTGATACCCAGCTTATTGCTCATGATAAAGAGGTTTATG 603
Query 601 ACATTGCTTGGGGTGGAGTTGGTGT-TTTCGCCTCTGTTTCAGAAGATGGTTCCGTTAGA 659
|||||||||||||||| |||||||| ||| |||||||| ||||| |||||||||||||||
Sbjct 604 ACATTGCTTGGGGTGGTGTTGGTGTCTTT-GCCTCTGTCTCAGAGGATGGTTCCGTTAGA 662
Query 660 GTGTTCGATCTCCGTGATAAGGAGCATTCGACGATTATCTATGAGAGTGGCGAGCCGAGT 719
||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 663 GTGTTTGATCTCCGTGATAAGGAGCATTCGACGATTATCTACGAGAGTGGTGAGCCTAGT 722
Query 720 ACTCCTTTGGTGCGTCTTAGTTGGAATAAGCAGGATCCGAGGTATATGGCTACTGTTATC 779
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 723 ACTCCTTTGGTGCGACTTAGTTGGAACAAGCAGGATCCGAGGTATATGGCTACTGTTATC 782
Query 780 ATGGGCAGTGCTAAAATTGTTGTGTTGGATATTCGGTTTCCGGCTCTTCCTGTTGTGGAG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 783 ATGGGCAGTGCTAAAATTGTTGTGTTGGATATTCGGTTTCCGGCTCTTCCTGTCGTGGAG 842
Query 840 CTTCAGCGACATCAGGCTAGTGTCAATGCTATAGCTTGGGCTCCTCATAGCTCTTCCCAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 CTTCAGCGACATCAGGCTAGTGTCAATGCTATAGCTTGGGCTCCTCATAGCTCTTCCCAT 902
Query 900 ATTTGCACTGCTGGTGATGATTCTCAGGCGTTGATTTGGGATATTTCTTCGATGGGACAG 959
|| ||| | ||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 903 ATCTGCTCCGCTGGAGATGATTCTCAGGCGTTGATTTGGGATATATCTTCCATGGGACAG 962
Query 960 CATGTTGAAGGTGGTTTGGATCCGATTCTGGCTTACACAGCCGGCGCTGAGGTTGAGCAG 1019
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 963 CATGTTGAAGGTGGTCTGGATCCGATTCTAGCTTACACAGCCGGCGCTGAGGTTGAGCAG 1022
Query 1020 CTGCAATGGTCTTCTTCCCAGCCTGATTGGGTTGCCATTGCCTTCTCTAACAAGCTGCAG 1079
|| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 CTTCAGTGGTCATCTTCTCAGCCTGATTGGGTTGCCATTGCCTTCTCTAACAAGCTGCAG 1082
Query 1080 ATTCTCAGGGTCTGATTATGGTTTCCAGATTTCTGT 1115
|||||| ||||||||||||| ||| |||||||||||
Sbjct 1083 ATTCTCCGGGTCTGATTATGTTTTACAGATTTCTGT 1118
> AT1G12910.1 | Symbols: ATAN11, LWD1 | Transducin/WD40 repeat-like
superfamily protein | chr1:4394897-4396291 REVERSE LENGTH=1395
Length=1395
Score = 1122 bits (607), Expect = 0.0
Identities = 926/1081 (86%), Gaps = 17/1081 (2%)
Strand=Plus/Plus
Query 24 TCTAGGGTTTATGCT-TTCATCGA-AGCAACAATGGTAACGAGCAGCGATCAAATCCAAA 81
|||||||||| |||| ||||| | || |||| |||||||||||||| || |||
Sbjct 107 TCTAGGGTTTTTGCTCGGAATCGATTTC-ACGATGGGAACGAGCAGCGATCCGATTCAAG 165
Query 82 ATGGTTCCGATGAGCAATCA-AAAAGATCAGAGATTTACACATACGAAGCACCATGGCAG 140
||||||||||||||| | || || |||||||||| || ||||||||||| ||||||||
Sbjct 166 ATGGTTCCGATGAGC-AGCAGAAGCGATCAGAGATCTATACATACGAAGCGCCATGGCAC 224
Query 141 ATCTACGCAATGAATTGGAGCATTCGTCGAGACAAGAAGTATCGACTCGCAATCACAAGC 200
||||||||||||||||||||| ||||||| || ||||||||||| ||||| ||||| |||
Sbjct 225 ATCTACGCAATGAATTGGAGCGTTCGTCGCGATAAGAAGTATCGTCTCGCCATCACTAGC 284
Query 201 CTCATCGAGCAATATCCAAATCGCGTCGAAATTGTTCAGCTTGATGAATCAAATGGTGAG 260
||| |||||||||| || || || ||||| ||||| ||||| |||||||| |||||||||
Sbjct 285 CTCCTCGAGCAATACCCGAACCGTGTCGAGATTGTGCAGCTCGATGAATCCAATGGTGAG 344
Query 261 ATTCGATCAGATCCAAATCTTTGCTTCGAGCATCCTTACCCACCAACGAAAACCAGTTTC 320
|| || || ||||| || || | ||| ||||||||||| ||||||||||| |||| ||||
Sbjct 345 ATCCGTTCCGATCCTAACCTCTCCTTTGAGCATCCTTATCCACCAACGAAGACCATTTTC 404
Query 321 ATTCCCGATAAAGAATGTCAAAGACCCGATCTTTTAGCTACTTCTAGTGATTTTCTTCGT 380
|| || || || ||||| |||||||| |||||| | |||||||| |||||||| ||||||
Sbjct 405 ATACCTGACAAGGAATGCCAAAGACCTGATCTTCTCGCTACTTCAAGTGATTTCCTTCGT 464
Query 381 TTATGGCGAATCTCTGATGATGAATCTCGTGTTGAGCTTAGGTCTTGTCTTAGTAGTGAT 440
|||||| ||||| |||||||| | || ||||||||||| | |||||||| | ||| ||
Sbjct 465 TTATGGAGAATCGCTGATGATCATTCCCGTGTTGAGCTCAAATCTTGTCTCAATAGCAAT 524
Query 441 AAGAATAATGAGTTTAGTGGTCCTATTACTTCATTTGATTGGAATGAAGCTGAGCCTA-G 499
||||| | ||||||| |||||||| ||||||| ||||||||||||||||||||||| | |
Sbjct 525 AAGAACAGTGAGTTTTGTGGTCCTCTTACTTCTTTTGATTGGAATGAAGCTGAGCC-ACG 583
Query 500 ACGAATTGGGACTTCTAGTATTGATACGACTTGTACTATTTGGGATATAGAGCGTGAAGT 559
|||||||| || ||||||| |||||||||||||||||| ||||| || ||||||||||
Sbjct 584 TCGAATTGGAACATCTAGTACTGATACGACTTGTACTATCTGGGACATTGAGCGTGAAGC 643
Query 560 TGTTGATACTCAGCTTATTGCTCATGATAAAGAGGTTTATGACATTGCTTGGGGTGGAGT 619
|||||||||||||||||||||||||||||| || |||| ||| |||||||||||||| ||
Sbjct 644 TGTTGATACTCAGCTTATTGCTCATGATAAGGAAGTTTTTGATATTGCTTGGGGTGGTGT 703
Query 620 TGGTGTTTTCGCCTCTGTTTCAGAAGATGGTTCCGTTAGAGTGTTCGATCTCCGTGATAA 679
||||||||| || |||||||||| ||||| |||||||| ||||| ||||| ||||||||
Sbjct 704 TGGTGTTTTTGCATCTGTTTCAGCTGATGGCTCCGTTAGGGTGTTTGATCTTCGTGATAA 763
Query 680 GGAGCATTCGACGATTATCTATGAGAG-TGGCGAGCC-GAGTACTCCTTTGGTGCGTCTT 737
||| ||||||||||||||||||||||| | |||||| || ||||||||| |||||||||
Sbjct 764 GGAACATTCGACGATTATCTATGAGAGCT-CCGAGCCTGA-TACTCCTTTAGTGCGTCTT 821
Query 738 AGTTGGAATAAGCAGGATCCGAGGTATATGGCTACTGTTATCATGGGCAGTGCTAAAATT 797
||||||| || |||||||| ||||| ||||||||| ||||||||| |||||||||| ||
Sbjct 822 GGTTGGAACAAACAGGATCCTAGGTACATGGCTACTATTATCATGGACAGTGCTAAAGTT 881
Query 798 GTTGTG-TTGGATATTCGGTTTCCGGCTCTTCCTGTTGTGGAGCTTCAGCGACATCAGGC 856
|| ||| || || ||||| ||||||||||||||||| || |||||||| |||||||| ||
Sbjct 882 GTGGTGCTT-GACATTCGTTTTCCGGCTCTTCCTGTGGTTGAGCTTCAACGACATCAAGC 940
Query 857 TAGTGTCAATGCTATAGCTTGGGCTCCTCATAGCTCTTCCCATATTTGCACTGCTGGTGA 916
|||||||||||| || |||||||||||||||||||||| || ||||| |||||||| ||
Sbjct 941 TAGTGTCAATGCCATTGCTTGGGCTCCTCATAGCTCTTGTCACATTTGTACTGCTGGAGA 1000
Query 917 TGATTCTCAGGCGTTGATTTGGGATATTTCTTCGATGGGACAGCATGTTGAAGGTGGT-T 975
||||||||| || ||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 1001 TGATTCTCAAGCTTTGATTTGGGATATTTCATCCATGGGACAGCATGTTGAAGGTGGTCT 1060
Query 976 TGGATCCGATTCTGGCTTACACAGCCGGCGCTGAGGTTGAGCAGCTGCAATGGTCTTCTT 1035
|| | || ||||| |||||||| || || |||||| |||||||||| || ||||| ||||
Sbjct 1061 TG-ACCCTATTCTAGCTTACACTGCTGGTGCTGAGATTGAGCAGCTTCAGTGGTCCTCTT 1119
Query 1036 CCCAGCCTGATTGGGTTGCCATTGCCTTCTCTAAC-AAGCTGCAGATTCTCAGGGTCTGA 1094
| |||||||||||||| || ||||| ||||||| | |||||||| ||||||||||| |||
Sbjct 1120 CTCAGCCTGATTGGGTCGCAATTGCTTTCTCTA-CTAAGCTGCAAATTCTCAGGGTTTGA 1178
Query 1095 T 1095
|
Sbjct 1179 T 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54668393505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5