BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484434
Length=2025
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26670.1 | Symbols: | Protein of unknown function (DUF803) ... 2798 0.0
> AT3G26670.1 | Symbols: | Protein of unknown function (DUF803)
| chr3:9797986-9800910 REVERSE LENGTH=1794
Length=1794
Score = 2798 bits (1515), Expect = 0.0
Identities = 1695/1777 (95%), Gaps = 32/1777 (2%)
Strand=Plus/Plus
Query 277 GAGAGGACTTGTAATCAATCTGCATCTTTTGTTAG-AGTCGATCTGGATCTGAAGCTCCT 335
||||| |||||| ||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 22 GAGAGAACTTGT--GCAATCTGCATCTTCTGTTAGAAATCGATCTGGATCTGAAGCTCCT 79
Query 336 CTATCGTCTCTTCGCAGG---TA---ATC-TC-C--G-A----AA-A--C--ATGA--G- 372
|||||||| ||||||||| || || || | | | || | | |||| |
Sbjct 80 CTATCGTCCCTTCGCAGGTTTTATGCTTCTTCTCTTGAAGGCTAAGATTCATATGAGGGA 139
Query 373 GGCCTGAGCTAGTTGATTGCTTCAAGTTTGCAGCTTTAGATGATCCTTTAACTAAGCCAT 432
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 140 GGCCTGAGCTAGTTGATTGGTTCAAGTTTGCAGCTTTAGATGATCCTTTAACTGAGCTAT 199
Query 433 CTTCATTCTTTAATTACCAATGGGAGAGTGGGTCATCGGAGCTTTCATCAACATTTTTGG 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 CTTCATTCTTTAATTACCAATGGGAGAGTGGGTCATCGGAGCTTTCATCAACATTTTTGG 259
Query 493 AAGTGTTGCTATTAATTTTGGCACAAACCTTCTCAAATTGGGACATAATGAGAGAGAAAG 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 AAGTGTTGCTATTAATTTTGGCACAAACCTTCTCAAATTGGGACATAATGAGAGAGAAAG 319
Query 553 GTTAGCTCTACAAGATGGCGGAGGAAAGATGCCATTGAAGCCAATTATACATTTTCAGAC 612
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 320 GTTAGCCCTACAAGATGGCGGAGGAAAGATGCCATTGAAGCCAATTATACATAATCAGAC 379
Query 613 TTGGAGAGTTGGGATTCTTGTCTTTCTTCTTGGGAATTGCCTCAATTTCATTTCGTTTGG 672
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TTGGAGAGTTGGGATCCTTGTCTTTCTTCTTGGGAATTGCCTCAATTTCATTTCGTTTGG 439
Query 673 TTATGCTGCTCAGTCCCTTCTAGCAGCTCTTGGATCTATTCAATTTGTATCTAACATAGC 732
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 440 TTATGCTGCTCAGTCCCTTCTAGCAGCTCTTGGATCCATTCAATTTGTATCCAACATAGC 499
Query 733 ATTTGCTTATGTTGTATTGAACAAAATGGTGACTGTCAAAGTACTCGTTGCTACAGCCTT 792
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 500 ATTTGCTTATGTTGTATTGAACAAAATGGTTACTGTCAAAGTACTCGTTGCTACAGCCTT 559
Query 793 TATAGTTCTTGGAAACGTTTTCCTTGTAGCTTTTGGTAATCACCAGTCACCAGTTTTCAC 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 TATAGTTCTTGGAAACGTTTTCCTTGTAGCTTTTGGTAATCACCAGTCACCAGTTTTCAC 619
Query 853 ACCCGAACAGTTGGCAGAGAAATATAGCAATGTAACATTCTTGGTCTACTGTGGTATTTT 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 ACCCGAACAGTTGGCAGAGAAATATAGCAATGTAACATTCTTGGTCTACTGTGGTATTTT 679
Query 913 GATTTTAATAGTAGCTGTGCACCATTTCCTCTATAGGAAGGGTGAAGTTTTGATATCTAC 972
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 680 GATTTTAATAGTAGCCGTGCACCATTTCCTCTATAGGAAGGGAGAAGTTTTGATATCTAC 739
Query 973 ACCTGGACAAGAAATTAGCTCCTATTGGAAAATGCTGCTTCCTTTCTCATATGCTGTGGT 1032
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 740 ACCTGGACAAGAAATTAGCTCTTATTGGAAAATGCTGCTTCCTTTCTCATATGCAGTGGT 799
Query 1033 CTCGGGTGCTATAGGATCATGTTCGGTTTTATTTGCCAAGTCACTCTCAAACTTGCTGAG 1092
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 800 CTCGGGTGCTATAGGATCATGTTCAGTTTTATTTGCCAAGTCACTCTCGAACTTGCTGAG 859
Query 1093 ATTGGCCATGTCTAGTAGCTATCAATTGCACAGCTGGTTCACATACTCTATGCTTCTTTT 1152
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 860 ATTGGCCATGTCTAGTAGCTATCAACTGCACAGCTGGTTCACATACTCTATGCTTCTTTT 919
Query 1153 ATTTCTCAGTACAGCCGGATTCTGGATGACAAGATTGAATGAAGGATTGTCTCTGTATGA 1212
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 920 ATTTCTTAGTACAGCCGGATTCTGGATGACAAGATTGAATGAAGGATTGTCTCTATATGA 979
Query 1213 TGCAATTCTCATAGTTCCAATGTTTCAGATTGCTTGGACTTTCTTCTCCATATGTACAGG 1272
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 980 TGCAATTCTCATAGTTCCAATGTTTCAGATTGCTTGGACTTTCTTCTCCATCTGTACAGG 1039
Query 1273 ATTCATCTACTTTCAAGAGTTTCAGGTTTTCGATGCACTGAGAACAACAATGTTCATATT 1332
|| ||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1040 ATGCATTTACTTTCAAGAGTTTCAGGTTTTCGATGCGCTAAGAACAACAATGTTCATATT 1099
Query 1333 AGGAATGATGTGTGTATTCATAGGCATTTCTTTACTAGCACCTGATGATACAAGTGGCAA 1392
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1100 AGGAATGATGTGTGTATTCATAGGCATTTCTTTACTAGCACCTGATGATACAAGAGGCAA 1159
Query 1393 TGAGACAAGAGATAATTCATCATCTCTTGACTCCATCGTGTCCTCGAGTGTGCCAACTGA 1452
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TGAGACAAAAGATAATTCATCATCTCTTGACTCCATCGTGTCCTCGAGTGTGCCAACTGA 1219
Query 1453 GGAGGACAGGTTGATGCCACAATCATCTGAAGATGGACATAGCAAAGACACAAGAGTAGT 1512
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1220 GGAGGACAGGTTGATACCACAATCATCTGAAGATGGACACAGCAAAGACACAAGAGTAGT 1279
Query 1513 TGTACAAGGAATGTATATGAAAGCAGCTGATTTAATTGCCAAGACAAAGACTGCTTGTTT 1572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 TGTACAAGGAATGTATATGAAAGCAGCTGATTTAATTGCCAAGACAAAGACTGCTTGTTT 1339
Query 1573 AGCAGCATTGGGCTTTGGTGAAGACTCTATAAATGCATCTGCGATTCTAGTGATGCCAAT 1632
||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 AGCAGCACTAGGATTTGGTGAAGACTCTATAAATGCATCTGCGATTCTAGTGATGCCAAT 1399
Query 1633 GGTATCTTCGAAGATTACAGGGTTTAGAGGAAATGGACTCGAACGGGCTAAGATTTTGTC 1692
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1400 GGTATCTTCGAAGATTACAGGGTTTAGAGGAAACGGACTCGAACGGGCAAAGATTTTGTC 1459
Query 1693 CATGAGAGGGTCAGGATGGAGCAAACTAGCCATGGAAGAAGAAGGAACAAGAATGCTTGA 1752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 CATGAGAGGGTCAGGATGGAGCAAACTAGCCATGGAAGAAGAAGGAACAAGAATGCTTGA 1519
Query 1753 AAAGACCATGTCTTCAAAGGCTTAAGTAGGTAGTTAAAACGGATAGCATGAGACAGAATC 1812
||||||||| |||||||||||||||||||||||| ||||| || |||||||||| |||||
Sbjct 1520 AAAGACCATCTCTTCAAAGGCTTAAGTAGGTAGTGAAAACAGAAAGCATGAGACCGAATC 1579
Query 1813 TCATGTACATTCTTCTCTTATCATATATGGCTT-TAGTAGCAAAATCTGTTTTTAGGAAA 1871
||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 1580 TCATGCACATTCTTCTCTTATCACATATG--TTGTAGTAGCAAAATCTGTTTTTAGGAAA 1637
Query 1872 CCATCCCACGATTGTGTATTCTTGTAAGAACCAAATTGTATTACATAACA---TCTCTGT 1928
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1638 CCATCCCACGATTGTGTATTCTTGCAAGAACCAAATTGTATTACATAACAACATCTCTGT 1697
Query 1929 ATATTCAtttttttGTTTGAGACCTGTGAAAAGTGTTTCATAATGCACAAAATGTAACCA 1988
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1698 ATATTCATTTTTTTGTTTGAGACCTGTGAAAAGTGTTTCATAAAGCACAAAATGTAAACA 1757
Query 1989 AGTTTGATTCGAGTTTATATTATTATTACAAATCCAT 2025
||||||| |||||||||||||||||||||||||||||
Sbjct 1758 AGTTTGAATCGAGTTTATATTATTATTACAAATCCAT 1794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100350889455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5