BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484438
Length=1955
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26680.1 | Symbols: SNM1, ATSNM1 | DNA repair metallo-beta-l... 2327 0.0
> AT3G26680.1 | Symbols: SNM1, ATSNM1 | DNA repair metallo-beta-lactamase
family protein | chr3:9801308-9804282 FORWARD LENGTH=2132
Length=2132
Score = 2327 bits (1260), Expect = 0.0
Identities = 1403/1469 (96%), Gaps = 21/1469 (1%)
Strand=Plus/Plus
Query 93 ATGGATTTTTCTGATGAAGA--A-GACGAAGACTGGTTTGGTTCTCGTTTCAACGACGGT 149
|||||||||||||||||||| | |||||| |||| ||||||||||||||||||||||||
Sbjct 2 ATGGATTTTTCTGATGAAGACGACGACGAAAACTGTTTTGGTTCTCGTTTCAACGACGGT 61
Query 150 GTTAAT---GAAGAAG-A-A-GAAGAGGGTTTTGTGTTTTACGACGATGTTGGAGAAAAT 203
|| ||| ||||||| | | |||||||||||||||||| |||||||||||| ||| |||
Sbjct 62 GTAAATGAAGAAGAAGAAGACGAAGAGGGTTTTGTGTTTAACGACGATGTTGAAGAGAAT 121
Query 204 GAAGAAGAGGAGGGTTTTGCGTCTGATTTCTATAAGGCTGGTTCTGATTGGTCTTGTTTG 263
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 GAAGAAGAAGAGGGTTTTGCGTCTGATTTCTATAAGGCTGGTTCTGATTGGTCTTGTTTA 181
Query 264 GTGGAAGATGAAGAGACTGTTTCTTCTTCTGAGAAGAAGAAAAAGATGAAACAAG-CGAA 322
|||||||||||||||||||||||||||||| | |||| |||||||||| || ||||
Sbjct 182 GTGGAAGATGAAGAGACTGTTTCTTCTTCT--G-TGAAG---AAGATGAAAC-AGTCGAA 234
Query 323 CTTGTTTCAGATTTGGGGTTTACAAGAGAATTCTCCTGATACAACGAAGAAGATGAAACA 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 CTTGTTTCAGATTTGGGGTTTACAAGAGAATTCTCCTGATACAACGAAGAAGATGAAACA 294
Query 383 AACTGATTTGTTTCAGAGTTGGGGTTTACAAAAGCCTTCTCCTTTCACTTCCCCTGCTTC 442
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 295 AACTGATTTGTTTCAGAGTTGGGGTTTACAAAAGCCTTCTCCTTTCACTTCACCTGCTTC 354
Query 443 GAATTCGTCGAAAAAGCCGACGAGTGCTCTTGGAAAGAGACGTAGAGACTCTTCGTTTAG 502
||||||| |||| ||| ||||||||||||||||||| || ||||||||||||||||||||
Sbjct 355 GAATTCGGCGAAGAAGACGACGAGTGCTCTTGGAAAAAGGCGTAGAGACTCTTCGTTTAG 414
Query 503 CAATGACTCGCCTCGACCATGTCCTTTTTACAAGAAACTTCCAGGAACACCGTTTACTGT 562
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 415 CAATGACTCGCCTCGACCATGTCCATTTTACAAGAAACTTCCAGGAACACCGTTCACTGT 474
Query 563 GGATGCTTTTCGTTATGGTTGTGTTCAAGGATGTTCTGCTTATTTCCTTACTCATTTTCA 622
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GGATGCTTTTCGCTATGGTTGTGTTCAAGGATGTTCTGCTTATTTCCTTACTCATTTTCA 534
Query 623 CGCTGATCATTACATTGGTCTCACTAAAGCTTGGTCTCATGGTCCTATTTACTGCTCCTC 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CGCTGATCATTACATTGGTCTCACTAAAGCTTGGTCTCATGGTCCTATTTACTGCTCCTC 594
Query 683 TCTCACTAGTCGTCTTCTTAGACTTAGTCTCTCTGTCGATCCCTCGTTTATTCATCCATT 742
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 595 TCTCACTAGTCGTCTTCTTAGACTTAGTCTCTCTGTTAATCCCTCGTCTATTCATCCATT 654
Query 743 GGAGCTAGATGTTGAATACACTATTAATGGGATTAAAGTCACTTTAATTGAAGCTAATCA 802
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GGAGCTAGACGTTGAGTACACTATTAATGGGATTAAAGTCACTTTAATTGAAGCTAATCA 714
Query 803 TTGCCCTGGTGCTGCTCTTATTCACTTTCGGCTCTTAGATGGAACGTGTTATCTGCATAC 862
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 715 TTGCCCTGGTGCTGCTCTTATTCACTTTCGTCTCTTAGATGGAACATGTTATCTGCATAC 774
Query 863 TGGAGATTTCAGGGCTTCTAAAAAGATGCAAACGCATCCTCTCCTCTTTAACCAACGAGT 922
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 775 CGGAGATTTCAGGGCTTCTAAACAGATGCAAACGCATCCTCTCCTCTTTAACCAACGAGT 834
Query 923 TCATGTTCTGTATTTGGATACAACTTATTGCAATCCGAGATACAAATTCCCCTCTAAAGA 982
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 835 TCATGTTCTGTATTTGGATACAACATATTGCAATCCGAGATACAAATTCCCTTCTAAAGA 894
Query 983 AGATGTGTTAAGCTATGTTGTGAGAATCACAAAGGATTTCCTCAGGAAGCAACCGAAGAC 1042
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AGATGTGTTAAGTTATGTTGTGAGAATCACAAAGGATTTCCTCAGGAAGCAACCGAAGAC 954
Query 1043 TCTGATTGTGGTTGGCTCTTATAGCATCGGAAAAGAATGTGTTTATCTTGCTATTGCCAA 1102
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 955 TCTGATTGTGGTTGGTTCTTACAGCATTGGAAAAGAATGTGTTTATCTTGCTATTGCCAA 1014
Query 1103 AGCTCTTGGGGTTAAGATATTTGCAAATGCTTCAAGAAGACGGATACTGCAATCTTTTGG 1162
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1015 AGCTCTTGGGGTTAAGATATTTGCAAATGCTTCAAGAAGACGAATACTGCAATCTTTTGG 1074
Query 1163 TTGGGATGATATTTCGAAGAATCTTTCTACAGATGGGAAAGCAACATGTCTTCACGTTCT 1222
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1075 TTGGGATGATATTTCGAAGAATCTTTCTACAGATGGGAAAGCCACATGTCTTCATGTTCT 1134
Query 1223 GCCTATGTCATCACTGAAAGTTGAAAGACTCGACGAACACTTGAA-AGTTTATAGAGAAC 1281
||||||||| ||| ||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 1135 GCCTATGTCGTCATTGAAAGTTGAAAGACTCGATGAACACTTGAAGA-TTTATAGAGAAC 1193
Query 1282 AGTATGGAGCAGTTTTGGCATTTAGGCCCACAGGTTGGACTTACTCCGAGAAGATAGGCG 1341
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1194 AGTATGGAGCAGTTTTGGCATTTAGGCCCACAGGTTGGACTTACTCCGAGAAGATAGGTG 1253
Query 1342 AACACCTTGATCTGATAAAACCAACTTCTAAGGGGAAAA-TCACCATTTATGGGGTTCCA 1400
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||
Sbjct 1254 AACACCTTGATCTGATAAAACCAACTTC-AAGGGGAAAAATCACCATTTATGGGGTGCCA 1312
Query 1401 TATAGTGAGCATTCAAGCTTCACAGAACTTCGTGAGTTTGTTCAATTCTTAAGGCCGGAT 1460
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1313 TATAGTGAGCATTCAAGCTTCACAGAGCTTCGTGAGTTTGTTCAATTCTTAAGGCCTGAT 1372
Query 1461 AAGATTATTCCTACGGTGAACAATGGAAATGCTGGAGCTCGCGAGAAAATGCAATCATGT 1520
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1373 AAGATTATTCCTACGGTGAACAATGGAAATGCTGGAACTCGCGAGAAAATGCAATCATGT 1432
Query 1521 TTCAGAGAATGGCTCAGACGCTGAGATTC 1549
||||||||||||||||||||||||| |||
Sbjct 1433 TTCAGAGAATGGCTCAGACGCTGAGTTTC 1461
Score = 185 bits (100), Expect = 1e-45
Identities = 137/154 (89%), Gaps = 5/154 (3%)
Strand=Plus/Plus
Query 1637 CTGCAGTTTCTGAATCCCAATATGTTGATCATTGAAGCTTTTAAGGGAGGCT-TGGTGCT 1695
||| ||||||||||||||||||||||||||||||||||||| || ||| | | || ||||
Sbjct 1453 CTG-AGTTTCTGAATCCCAATATGTTGATCATTGAAGCTTTCAAAGGATG-TGTGATGCT 1510
Query 1696 TCTGTAAGATTTTGAT-ATTGCAGTTGGTGAATACAGTAGAACTGAAGCACTTGAAGGAT 1754
|||||||||| ||| | |||||| ||||||||||||||||| |||| |||||||||||
Sbjct 1511 TCTGTAAGATCTTGGTTATTGCAATTGGTGAATACAGTAGAT-TGAAATACTTGAAGGAT 1569
Query 1755 TCATAATATTCTTTGATCAAGAGGTTTTATTCTT 1788
|||||||||||||||||| ||| |||||||||||
Sbjct 1570 TCATAATATTCTTTGATCTAGATGTTTTATTCTT 1603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96836851305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5