BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484442
Length=1951
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26700.1 | Symbols: | Protein kinase superfamily protein | ... 2689 0.0
> AT3G26700.1 | Symbols: | Protein kinase superfamily protein
| chr3:9809950-9812664 FORWARD LENGTH=2006
Length=2006
Score = 2689 bits (1456), Expect = 0.0
Identities = 1574/1628 (97%), Gaps = 19/1628 (1%)
Strand=Plus/Plus
Query 332 GAATGTGGGGAATCACGTCATCGA--TTGTTGAATTTTTGTGATATTTAATCGCCGATGA 389
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 389 GAATGTGGGGAATCACGTCATCGATTTTGTTGAATTTGTGTGATATTTAATCGCCGATGA 448
Query 390 AGTTGAGATTTTCTGGAGATCTGTCAAGGGTTATCGCATGGTAGTAGTAGCTTGGAGCAT 449
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 449 AGTTGAGATTTTCTGGAGATCTGTCAAGGGTTATCGCATGGTAGTAGAAGCTTGGAGCAT 508
Query 450 CGGTgagaaaaagagaaagagagagag-GGGCTGTTTTGTTTTCCAAATGTCAGCAATTC 508
||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 509 CGGTGAGGAAAAGAGAAAGAGAGAGAGAAGGCAGTTTTGTTTTCCAAATGTCAGCAATTC 568
Query 509 TTGCAGCTGCCATTGGTGGTGCTGTAGGAGCTCTTGCATTGATTGCTTTGTTTGTTTTTC 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 TTGCAGCTGCCATTGGTGGTGCTGTAGGAGCTCTTGCATTGATTGCTTTGTTTGTTTTTC 628
Query 569 TCCTTTGGTTTTGTGTCTTTCGTCGTAAGAATCTGTC-ACGAACTTCTGAGACTGGCTCT 627
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 629 TCCTTTGGTTTTGTGTCTTTCGTCGTAAGAATCTGTCTA-GAACTTCTGAGACTGGCTCT 687
Query 628 TCTGATCCATCTACTCAAGAAGGAAGAAATGTTGCAATTGAGTTGTCAATGAGAGAAGCT 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 TCTGATCCATCTACTCAAGAAGGAAGAAATGTTGCAATTGAGTTGTCAATGAGAGAAGCT 747
Query 688 AGAAGATTTGAAATGGAGGAACTTGCTCAAGCCACAAAGAGTTTTACCAATAAAAGTCTT 747
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 748 AGAAGATTTGAAATGGAGGAACTTGCTCAAGCCACCAAGAGTTTTACCAATAAAAGTCTT 807
Query 748 ATTGGTATTGGCAAATTCGGCGAGGTTTACAAAGGTTTGCTTCAAGATGGTGTTCTTGTA 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 ATTGGTATTGGCAAATTCGGCGAGGTTTACAAAGGTTTGCTTCAAGATGGTGTTCTTGTA 867
Query 808 GCTATCAAGAAAAGACCTGGTTTGCCTACACAAGAATTCGTTAACGAGGTTCGTTATCTA 867
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 868 GCTATCAAGAAAAGACCTGGTTTGCCTACTCAAGAATTTGTTAACGAGGTTCGTTATCTA 927
Query 868 TCGTCTATCCATCACCGTAATCTTGTTACTCTTTTGGGGTTTTGCCAAGAAAGTAACACA 927
||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 928 TCGTCTATCCATCACCGTAATCTCGTCACTCTTTTGGGGTTTTGCCAAGAAAGCAACACA 987
Query 928 CAGTTTCTTGTCTACGAGTATGTTCCTAATGGAAGTGTTTCCAGTCACCTGTACGGTGCT 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 CAGTTTCTTGTCTACGAGTATGTTCCTAATGGAAGTGTTTCCAGTCACCTGTACGGTGCT 1047
Query 988 GGTGGTAAAGTACCTGGAAATAGACTAGAATTCAGACATAGGCTTGCAATATCTATAGGA 1047
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1048 GGTGGTAAAGTACCTGGTAATAGACTAGAGTTCAGACATAGGCTTGCAATATCTATAGGA 1107
Query 1048 GCTGCTAAAGGCTTGGCACATCTTCACTCGTTGAGTCCTCGATTGATACACAAGGACTTC 1107
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1108 GCAGCTAAAGGCTTGGCACATCTTCACTCGTTGAGTCCTCGGTTGATACACAAGGACTTC 1167
Query 1108 AAAACCGCTAATGTTCTTGTGGATGAAAATTTCATTGCTAAGGTTGCGGATGCAGGAGTT 1167
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 AAAACCGCTAATGTTCTTGTGGATGAAAATTTCATTGCTAAGGTTGCGGATGCAGGAGTC 1227
Query 1168 CGTAATTTCTTAGGAAGAGAGGAAGTTGGTACATCGTCTCACATTGTTGCAGATCAGATT 1227
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1228 CGTAACTTCTTAGGAAGAGAGGATGTTGGTACATCGTCTCACATTGTTGCAGACCAGATT 1287
Query 1228 TTCCTGTCCCCAGAGGTTCAAGAGTTCAAAAGATTTTCAGAGAAAAGTGATGTCTATGCT 1287
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 TTCCTCTCCCCAGAGGTTCAAGAGTTCAAAAGATTTTCAGAGAAAAGTGATGTCTATGCT 1347
Query 1288 TTTGGTGTATTCCTCTTGGAATTAGTAAGTGGAAGAGAAGCATCAGAACCATCCCCTTCA 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 TTTGGTGTATTCCTCTTGGAATTAGTAAGTGGAAGAGAAGCATCAGAACCATCCCCTTCA 1407
Query 1348 AGCTCAACGCAAACTCTAGTCGAATGGATGCAAAACTTAACGGATTACGCGGATATACCA 1407
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1408 AGCTCAACGCAAACTCTAGTCGATTGGATGCAAAACTTAACGGATTACGCAGATATACCA 1467
Query 1408 ATGATGATCGATGAGAGACTAGGAGGTACATACACAGCAGAAGGAGTTGAGGAACTTATT 1467
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 ATGATGATTGATGAGAGACTAGGAGGTACATACACAGCAGAAGGAGTTGAGGAACTTATT 1527
Query 1468 ACATTGACACTAAGATGTGTTGATGTATCAAGTGAAAAGAGACCAACAATGAGTTTTGTT 1527
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1528 ACATTGACACTAAGATGTGTTGATGTATCAAGTGAGAAGAGACCAACAATGAGTTTTGTT 1587
Query 1528 GTGACAGAGCTTGAGAGAATATTGGATAAGGAAGTGAGCTTAACAACAGTAATGGGTGAA 1587
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1588 GTGACAGAGCTTGAAAGAATATTGGATAAAGAAGTGAGCTTAACAACAGTAATGGGTGAA 1647
Query 1588 GGTACTCCAACTGTTACTCTTGGAAGTCAGCTTTTTAAAGCAACCAAGTGATTAT-A-AA 1645
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1648 GGTACTCCAACTGTTACTCTTGGAAGTCAGCTTTTTAAAGCAACCAAGTGATTATTATAA 1707
Query 1646 -GGAACCATCTTTTTACatatatatatatatatatacatatatatatattataAGCTCTC 1704
||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| ||||
Sbjct 1708 AGGAACCATCTTTTTACATATATATACATATATATA--TATATAT-TAT-ATAAGTTCTC 1763
Query 1705 TGAGACAAAAACCAATCAGAGAACTTAAGGAGGAGGAAGAAGAAGAAGACTGATCAGCTG 1764
|||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1764 TGAGACAAGAACCAATCAGAGAACTTAAGGAGGA--A-GAAGAAGAAGACTGATCAGCTG 1820
Query 1765 TTTTGTGTTAAGTGTATAAAGAACAGCTGA-GCTTATTAtttttttttttcttttcctcc 1823
|||||||||||||||||||||||||||||| ||||||| ||| ||| ||| ||| |||||
Sbjct 1821 TTTTGTGTTAAGTGTATAAAGAACAGCTGAAGCTTATTGTTTGTTTGTTT-TTTCCCTCC 1879
Query 1824 ttttttacttcctttggaggttattattttcagcaattatttttttGACAATGAGTGCAG 1883
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1880 TTTTTCACTTCCTTTGGAGGTTATTATTTTCAGCAATTATTTTTTTGACAATGAGTGCAG 1939
Query 1884 AAAAATATAACTTTGTAAAAACATTATTTATATTGATATAAAGGAAGCAAAGAGTGGAAT 1943
|||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1940 AAAAGTATAACTTTGTAAAAACATTATTTAT-T-GATATAAAGGAAGCAAAGAGTGGAAT 1997
Query 1944 GTTGTGTG 1951
||||||||
Sbjct 1998 GTTGTGTG 2005
Score = 326 bits (176), Expect = 6e-88
Identities = 310/367 (84%), Gaps = 39/367 (11%)
Strand=Plus/Plus
Query 1 GTTGCACAAGAGTAATAACTAACCAAAGTAAAAAGCTTGATTCTTGTTGTTGTTGTTG-C 59
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1 GTTGCACAAGAGTAAAAACTAACCAAAGTAAAAAGTTTGATTCTTGTTGTTGTTGTTGCC 60
Query 60 --TGTTGATTCTTAGTTAAGTAAGT--AAAATTTTCAGTGAGAGTCTT---------A-a 105
||||||||||||||||||||||| ||||||||| | | ||||||| | |
Sbjct 61 GTTGTTGATTCTTAGTTAAGTAAGTAAAAAATTTTC-G-GTGAGTCTTAAGAAAGAGAGA 118
Query 106 gagagagagagTTGTTGTCTGAAACGATGTCACTTTCTGTCGGCATTGTCTGCGTTCCGA 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GAGAGAGAGAGTTGTTGTCTGAAACGATGTCACTTTCTGTCGGCATTGTCTGCGTTCCGA 178
Query 166 CACAAGACTTGATTTCTTCTTCTT---CTT------ACCCTTT-ACCTTCGAGTT---CT 212
|||||||||||||||||||||||| ||| ||||||| |||||| |||| ||
Sbjct 179 CACAAGACTTGATTTCTTCTTCTTGTTCTTCTTCTTACCCTTTTACCTTCAAGTTGTTCT 238
Query 213 AGAAGAAACTGCGGCGCTTTGATTTGATGTTTC-ATTGCtct-tcttc--ttcttcttct 268
|||||||||||||||| |||||||||||||||| |||||||| | ||| || ||| |
Sbjct 239 AGAAGAAACTGCGGCGGTTTGATTTGATGTTTCCATTGCTCTCTGTTCCGTT-TTCA-CA 296
Query 269 tcttGATAATCCCTGCTTCTGATTAGAAAAAGAATTTGATTTCTTGAATCTGCCGACTTT 328
| | | || || ||||||||||||||| ||||||||| |||||||||||||| | |
Sbjct 297 CCAAGCTT-TCT-TGTTTCTGATTAGAAAAATAATTTGATTCCTTGAATCTGCCGA-TAT 353
Query 329 AAGGAAT 335
|||||||
Sbjct 354 AAGGAAT 360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96636049125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5