BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484443
Length=1003
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26710.1 | Symbols: CCB1 | cofactor assembly of complex C | ... 1498 0.0
> AT3G26710.1 | Symbols: CCB1 | cofactor assembly of complex C
| chr3:9813371-9814750 FORWARD LENGTH=1127
Length=1127
Score = 1498 bits (811), Expect = 0.0
Identities = 963/1031 (93%), Gaps = 32/1031 (3%)
Strand=Plus/Plus
Query 1 TTTTGGATAGACCCATCATGTAAAGGTTTAAGC------TTTGTTAGCCAAAGAGAAAGC 54
||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 101 TTTTGGATAGACCCATCATGTAAAGGTTTAAGCTTTTTTTTTGTTAGCCAAAGAGAAAGC 160
Query 55 tttttttAGTTCTCTTGACAATGGCGACGAAGCTGATTTCACCGCCGTTGTCTTGTCCAT 114
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 161 -CTTTTTAGTTCTATTGACAATGGCGACGAAGCTGATTTCTCCGCCGTTGTCTTGTCCGT 219
Query 115 GGGTTACTTCAAGAGAGGTG-TCAATCAAAGGGCTTCCACGTCGGAGAAGAGAATGGATG 173
|||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||
Sbjct 220 GGGTTACTTCAAGAGAGGTGAT-AATCAAAGGGCTTCCACGGCGGAGAAGAGAATGGATG 278
Query 174 GTCACGAAGAGAAACAGAGTCTCTGCTGTCACCGCCATGATTGTGGAGCCACTTTCTGTT 233
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 279 GTCACGAAGAGAAACAGAGTCTCTGCTGTCACGGCCATGATTGTGGAGCCACTTTCTGTT 338
Query 234 GTTTCTTCTTCAGCGATTCAGATTCATCACTGGTGGGAACAAAACCCTAATTCGTTACTG 293
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 339 GTTTCTTCTTCAGCAATTCAGATTCATCAATGGTGGGAACAAAACCCTAATTCGTTACTG 398
Query 294 TTAATGACGGAGGCTACTGGTGGTTATTCGTTGGCCAGCTATTACACGTCTTTGGGTTTG 353
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 399 TTAATGACGGAGGCTACTGGTGGTTATTCGTTGGCTAGCTATTATACGTCTTTGGGTTTG 458
Query 354 TTTGTTATCTCTGTTCCTGGTCTTTGGTCTCTTATCAAACGCTCTGTTAAATCTAAGATA 413
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 459 TTTGTTATCTCTGTTCCTGGTCTTTGGTCTCTAATCAAACGCTCTGTTAAATCAAAGATA 518
Query 414 GTGAGAAAGACGTTTGTTGTTAATGAAGTCAAGAAGGAACCAAAGCAAGTAGCTGGAGAG 473
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 519 GTGAGAAAGACGTTTGTTGTTAATGACGTCAAGAAGGAGCCAAAGCAAGTAGCTGGAGAG 578
Query 474 ATTCTATCTTTCTTCACAAGGAAGAATTTCAACATCACTGATCGAGGAGAGACGATCACG 533
|||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||
Sbjct 579 ATTCTATCTTTCTTCACAAGGAAGAATTTCAATATCACTGATCGTGGAGAAACAATCACA 638
Query 534 TTTGAAGGAAAGATGGTTCCAAGTAGAGGACAAGCTGCTCTGCTTACGTTTTGTACATGT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 TTTGAAGGAAAGATGGTTCCAAGTAGAGGACAAGCTGCTCTGCTTACGTTTTGTACATGT 698
Query 594 ATAAGCTTAGCAAGTGTTGGTCTTGTCTTAACCATTACAGTGCCTGATTTTGGAAACAAT 653
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 699 ATAAGCTTAGCAAGTGTTGGTCTTGTCTTAACCATTACAGTTCCTGATTTTGGAAACAAT 758
Query 654 TGGTTCTTCATCACCCTTCTCAGCCCACTCGCAGGAGTGTATTACTGGAAAAAGGCGTCG 713
||||||||||||| || || || ||||||||||||||||||||||||||||||||||||
Sbjct 759 TGGTTCTTCATCATTCTCCTTAGTCCACTCGCAGGAGTGTATTACTGGAAAAAGGCGTCG 818
Query 714 AGGAAAGAGGAGATAAAAGTGAAGATGATGGTGGGAGAAAAAGGGAAATTGGATGAGATT 773
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 819 AGGAAAGAGGAGATAAAAGTGAAGATGATGGTGGGATCAAAAGGGAGATTGGATGAGATT 878
Query 774 GTGGTTCAAGGAGATGATGTTCAGGTTGAAGAGATGAGGAAGGAGCTTCAGCTTAGTGAG 833
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||
Sbjct 879 GTGGTTCAAGGAGATGATGTTCAGGTCGAAGAAATGAGGAAAGAGCTTCAGCTTAATGAG 938
Query 834 AAAGGCATGGTTTATGTCAAAGGTCTCTTTGAGAGATCATCATAAT--TA-CATTTTAGC 890
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 939 AAAGGCATGGTTTATGTCAAAGGTCTCTTTGAGAGATCATCATAATGATAACATTTTAGC 998
Query 891 CTCTCCCAATTTTGCCTTTTGGGGAATGTGTTTATACTT-TT--A--A---T-GA----- 936
||| || | |||||||||||||||||||||| ||||||| || | | | ||
Sbjct 999 CTC-CC-ATTTTTGCCTTTTGGGGAATGTGTCTATACTTGTTTTATTAAGGTTGAGATTA 1056
Query 937 ----CTTTTTAACTCATTTTCCATACTTCATACTAAACAAATCGATTTGAATATAGTTCA 992
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1057 ATGACTTTTTAACTCATTTCCCATACTTCATACTAAACGAATCGATTTGAATATAGTTCA 1116
Query 993 TTTGATTGAGC 1003
|||||||||||
Sbjct 1117 TTTGATTGAGC 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49128995766
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5