BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484446
Length=2503
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26730.1 | Symbols: | RING/U-box superfamily protein | chr3... 3496 0.0
> AT3G26730.1 | Symbols: | RING/U-box superfamily protein | chr3:9823685-9827438
FORWARD LENGTH=2572
Length=2572
Score = 3496 bits (1893), Expect = 0.0
Identities = 2355/2565 (92%), Gaps = 83/2565 (3%)
Strand=Plus/Plus
Query 1 AAGTGAACACAGAAGAAGCGGTGGCTCTGAGCCGGCGAAATCTCCTCTCTCATCCCTAAA 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 20 AAGTGAACACAGAAGAAGCGGTGGCTCTGAGCCGGCGAAATCTCCTTTCTCATCCCTAAA 79
Query 61 ATTTTCATGTCCATCTTGCCTCCTCCGACTATCCAAGGTCACAATTCGTCTTCTTCTCCT 120
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 80 ATTTTCATGTCCATCTTGCCTCCTCCGATTATCCAAGGTCACAATTCG---TCTTCTCCT 136
Query 121 TCTTCAGATTCCTCTCTAAACCCTAGCTCTGAGCATGGCAACAACTCTTCTCCTTC-C-C 178
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 137 TCTTCAGATTCCTCTCTAAACCCTAGCTCTGAGCATGGCAACAACTCTTCTTCTTCTCTC 196
Query 179 GGA--TCT-C--T--TCT--TCCA-CC-GGAACTCGA-TTCG-CCGCA-C---ATTCT-- 219
||| | | ||| ||| || ||| ||| ||| ||| | | |||||
Sbjct 197 TCTCCTCTTCCCTCCTCTCCTCCTTCCCGGATCTCTTCTTCCACCGGAACTCGATTCTCC 256
Query 220 G-A-ATCC--A--C-TC--ACAATTTCTCCGGTGGCTCTAGGGAACCGATTGTTGCAGCT 270
| | || | | | || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 257 GGACATTCTGAATCCTCTCACAATTTCTCCGGTGGCTCTAGGGAACCGAGTGTTGCAGCT 316
Query 271 GAGGAGGGACATAGCCGTGGATCTTCCAAAGAGATGACGCAAAATGGAGCAGGGAAGGAG 330
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 317 GAGGAGGGACATAGCCGTGGATCTTCCAAAGAGATGACACAAAATGGAGCAGGGAAGGAG 376
Query 331 AGTTTTTCCCCATCTAATGCAGATAAGCGTGACCATTTTCGATATGATGGTCGAAGGAAT 390
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 AGTTTTTCCCCACCTAATGCAGATAAGCGTGACCATTTTCGATATGATGGTCGAAGGAAT 436
Query 391 AGGTCTAGAGGGAGAGGTTCTGGAGCTGCTGGttcttcttcttcttcttctCAAGTGCAG 450
|||||||||||||||||| |||||||||||||||||||||||||| | || |||||
Sbjct 437 AGGTCTAGAGGGAGAGGTACTGGAGCTGCTGGTTCTTCTTCTTCT-C-----AATTGCAG 490
Query 451 TATAATACCGGACCTTTTAATTCTCCTAGAGGCGGTGTTTCGCATCACAATCCAACTGGT 510
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 491 CATAATTCCGGACCTTTTAATTCTCCTAGAGGCGGTGTTTCGCATCATAATCCAACTGGT 550
Query 511 AGAAGAGCTAATATGATAAGTGGGAATCATTTACTGAATTTTCAGTATGATCCGATTTCC 570
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 AGAAGAGCTAATATGATAAGTGGGAATCATTTACTGAATTTTCAGTATGATCCGATTTCG 610
Query 571 CCGTCACAATCTAGGGGTCCTCCACCGCC--AA-GAAGGCAACAATACAAGGGGAGGCCT 627
| | ||||||||||||||||| ||||| || ||||||||||||| ||||||||||||
Sbjct 611 CAACCGCAATCTAGGGGTCCTCCTCCGCCTCAAAGAAGGCAACAATATAAGGGGAGGCCT 670
Query 628 TTTAACAAGGATTTGTTTCTTAAGGCCAATTATAAGTTTGTTGTTTTGGACACTGGAGAT 687
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 671 TTTAACAAGGATTTGTTTCTTAAGGCCAATTATAAGTTTGTTGTGTTGGACACTGGAGAT 730
Query 688 CATTCTCCTGATTCCATGGATCCTGATAAAATGCTGCAGTGGGATGATATTATTTGTGTA 747
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 CATTCTCCTGATTCAATGGATCCTGATAAAATGCTGCAGTGGGATGATATTATTTGTGTA 790
Query 748 AGGTATTCTACTCCGTCTCCTGTCCAGTGCCCGATTTGCTTGGAGTATCCTCTCTGTCCG 807
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 791 AGGTATTCTACTCCGTCTCCTGTCCAGTGTCCGATTTGCTTGGAGTATCCTCTATGTCCG 850
Query 808 CAGATAACTTCCTGTGGGCATATTTTCTGTTTCCCGTGTATTCTACAGTACCTGTTGATT 867
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 851 CAGATTACTTCCTGTGGGCATATTTTCTGTTTCCCGTGTATTCTACAGTACCTGTTGACT 910
Query 868 GGTGTCGATAACCACAAGGTGGAATGCGTCAAGAGGTGTCCTTTGTGCTTTGTGATGATT 927
||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 911 GGTGTTGATAACCACAAGGTGGACTGCTTCAAGAGGTGTCCTTTGTGCTTTGTGATGATT 970
Query 928 TCTCCAAGAGAGTTATACACTGTTTATATCGAAAACGTCAAGCAGTGTTCTGTTGGAGAT 987
||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||
Sbjct 971 TCTCCAAGAGAGTTATACACTGTTTATATTGAGAACGTCAAGCAGTATTCTGTTGGAGAT 1030
Query 988 CCCATCGAGTTTGTACTTTTGACCCGCAAGAAAGATTCTTTTGCTCCAACTCGGAAAAAT 1047
||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 1031 CCCATCGAGTTTGTACTTTTGACTCGCAAGAAAGATTCTTTTGCTCCTACCCGGAAAAAT 1090
Query 1048 GAGCATGACTCGGCTGTTCCTAATGGTGAAAATGAGATATATGATCCGTTTTCAAAGTTC 1107
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1091 GAGCATGACTTGGCTGTTCCTAATGGTGAAAATGAGATATATGATCCGTTCTCAAAGTTC 1150
Query 1108 ACTTTTACCCAAGATGTTGATCTCTCTGTCAGACAAGCAGTTTCGGAGTTAGACAGTTGG 1167
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1151 ACTTTCACCCAAGATGTTGATCTCTCTGTCAGACAAGCAGTTTCAGAGTTAGACAGTTGG 1210
Query 1168 ATTGCAAGAGCAGATCCTGAGCTCGTTGAAGACTTGGAGAAGCATCTATATGTAAATGCT 1227
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1211 ATTGCAAGAGCAGATCCTCAGCTCGTTGAAGACTTGGAGAAGCATCTTTATGTAAATGCC 1270
Query 1228 GCTTTGGAGCGTTTGGAGCAGAGAAAAATGTACTGGAATGAGCATAAGCTCTCTTATT-A 1286
||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 1271 GCTTTAGAGCGTTTGGAGCAGAGAAAATTGTACTGGAATGAGCATAAGCTCTCT-ATTTA 1329
Query 1287 CAGCAAATTGAGCACAACGGCTAGAAATCAGACACAATCATTCTCACCTCCTGATGTTTC 1346
||||||| || |||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1330 CAGCAAAGTGTGCACAACGGCTAGAAATCAGACTCAATCATTGTCACCTCCTGATGTTTC 1389
Query 1347 TCGAGTTGGTTATCAAGCACCCA-GCTGGGCGCATGGAGCAACAGATAGTGGCTCCAATG 1405
||||||||||||||||||||||| | |||| |||||||| ||||||| ||||||||||
Sbjct 1390 TCGAGTTGGTTATCAAGCACCCATGGGGGGC-CATGGAGCGCCAGATAGCGGCTCCAATG 1448
Query 1406 ATCAAGATAAATCAGCTGAAGATTCTTCAGTGGATAAGTCCGATGGAGAATCTCAATCTA 1465
|||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| |
Sbjct 1449 ATCAAGATAAATCAACTGAAGATTCTTCAGCGGATAAGTCAGATGGAGAATCTCAATCAA 1508
Query 1466 GTTTGGAAAAGAGTTGTGATAATG-----G-TCATCCTCTAGATGA-CGTAGACGCACCA 1518
||||||||||| |||||||||||| | |||||||||||| || | |||||||||
Sbjct 1509 GTTTGGAAAAGGGTTGTGATAATGATCTTGGTCATCCTCTAGAAGATCA-AGACGCACCG 1567
Query 1519 TCATCTTCCTCATGCAATGAAAGTAAAGGTTTCCTGTCGCACCAAAATGACACCAAAGAC 1578
||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||
Sbjct 1568 TCATCTTCCTCATGCAATGGAAGTAAAGGTTTCCTGTCTCACCAAATTGACACCAAAGAC 1627
Query 1579 CTGAAGGACAATGATGCTTACAACTTTTATCAGTCTGTTGATGGTCAGCACATTATCCTT 1638
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 CTGAAGGACAACGACGCGTACAACTTTTATCAGTCTGTTGATGGTCAGCACATTATCCTT 1687
Query 1639 CACCCTTTGAATTTGAAGTGCCTTCTGCATCACTATGGCAGCTATGACTTTCTTCCACCA 1698
||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1688 CACACTTTGAATGTGAAGTGCCTTCTGCATCACTATGGAAGCTATGACTTTCTTCCACCA 1747
Query 1699 AGAGTGAGTGGAAAGATACTGGAAATGGAGACCGTTACCCAGTCAGAAGCGATAAGGAGA 1758
||| ||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct 1748 AGATTGAGTGGAAAGATACTGGAAATGGAAACCATTACCCAATCAGAAGCGATAAGGAGA 1807
Query 1759 CGCTACCGCTTTTTAAGTCATTTTTCTTTAACAACTACA-TTCCAGATATGTGAAATTGA 1817
|||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||||
Sbjct 1808 CGCTACCGCTTTTTAAGTCATTTTTCTTTATCAACTACACTTC-AGATATGTGAGATTGA 1866
Query 1818 TATGAGGGAATCTTTGCCTCCTGATGCCTTCGCTCCATTTATAGATGAAATCAAGAAGCG 1877
||||| |||||| |||||||||||||| || |||||||||||| ||||||| ||||||||
Sbjct 1867 TATGAAGGAATCCTTGCCTCCTGATGCATTTGCTCCATTTATACATGAAATTAAGAAGCG 1926
Query 1878 TGAGAAGCAGAGAAAAGACCGTGCTAGGAAGGATCGAAAAAATAAAATCAAAGCTGAAGT 1937
|||||||||| | ||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1927 TGAGAAGCAGCGGAAAGAACGTGCTTGGAAGGATCGAAAAAATAAAATCAAAGCTGAAGT 1986
Query 1938 AGCTGCAGCTGCAGAGCTTGTACCATTGATGTCCAGTTTTGGACAGTCCTCT-C--GTGA 1994
||||||||||||||||||||||||||||||| |||||||||| ||||| ||| | ||||
Sbjct 1987 AGCTGCAGCTGCAGAGCTTGTACCATTGATGGCCAGTTTTGGGCAGTCGTCTTCTAGTGA 2046
Query 1995 TGACTTTCCTCCATTTTCCTTGGATGACTTTGAAGCTCTTGGAAACTCTGCCCCAATATC 2054
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2047 TGACTTTCCCCCATTTTCCTTGGATGACTTTGAAGCTCTGGGAAACTCTGCCCCAATATC 2106
Query 2055 ATCAAGCCCTCCAAACATTGGAGAGAGAAGTTCCTTCTCACATGTGACGAGGCTCGGTTT 2114
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2107 ATCAAGCCCTCCAAACATTGGAGAGAGAAGTTCCTTCTCACATGTGACAAGGCTCGGTTT 2166
Query 2115 CGCAGCAGGCCATGACTCTCCCAA-CTTCAGTAACGAGCCAACAAACGCTCAAAGCAGCA 2173
|||||| || || ||||| ||||| | | | ||||||||||||||||| |||||||||||
Sbjct 2167 CGCAGCTGGTCACGACTC-CCCAAACCTGAATAACGAGCCAACAAACGTTCAAAGCAGCA 2225
Query 2174 GCAGCA----T-A-GTCACAAACGCAACCACAGGTGCAAGAAACACAAACATAACATCAT 2227
|||||| | | ||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 2226 GCAGCAGCAGTGAAGTCTCAAACGCAACCACAGGTGCAAGAAACACAAACATAACATCCT 2285
Query 2228 TCGCAAGTGTAACATCAAGAACAACAACACCACCAATCGCACCAACCATCAAAGAGCCTG 2287
| || |||||| | |||||||||||||||||| | | ||||||||| |||||||||| |
Sbjct 2286 TTGCGAGTGTAGCTTCAAGAACAACAACACCA--A-TGGCACCAACCGTCAAAGAGCCCG 2342
Query 2288 GAAAGAGAGGGAAGAAACCA-AGCCGAGTGCTTCTATCGACAACCAGTGTACGCCGTTAC 2346
| |||||||||||||||| | |||||||| |||||||||||||| |||||||||||||||
Sbjct 2343 GTAAGAGAGGGAAGAAAC-AGAGCCGAGTACTTCTATCGACAACTAGTGTACGCCGTTAC 2401
Query 2347 TGAAAAGGACTATTTG-TT-GTGTTATGTATAATAATCTTTTC-TCCTAAGAAAAACTGA 2403
|||||||| |||| | || |||| |||||||||||||||||| || |||||||||||||
Sbjct 2402 TGAAAAGGCCTATG-GATTTGTGT-ATGTATAATAATCTTTTCATC-TAAGAAAAACTGA 2458
Query 2404 ATAAATAAAGAACCAGAAATT--G-TG-GTGAGTAAGTTTAAA-CTCAAACTTGGGCTTT 2458
|||| ||||||||||| ||| | || |||||||||| |||| ||||||||||||||||
Sbjct 2459 GTAAAGAAAGAACCAGAGATTATGGTGAGTGAGTAAGTGTAAAACTCAAACTTGGGCTTT 2518
Query 2459 GTTTCTTTTTGCAACCCATATGACTGATAATGAAGATGTCTCTCA 2503
||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 2519 GTTTCTTTTTGCAACCCATGTGACTGATAATGAAGGTGTCTCTCA 2563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124213350868
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5