BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484447
Length=601
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26740.1 | Symbols: CCL | CCR-like | chr3:9827801-9828680 FO... 905 0.0
> AT3G26740.1 | Symbols: CCL | CCR-like | chr3:9827801-9828680
FORWARD LENGTH=712
Length=712
Score = 905 bits (490), Expect = 0.0
Identities = 558/590 (95%), Gaps = 8/590 (1%)
Strand=Plus/Plus
Query 19 AACCAAAAGATCAACT-GATTACAAAAATGCAGGGCTCTCTGTTCATCAAACCAACAAtt 77
|||||||||||||| | |||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 42 AACCAAAAGATCAA-TAGATTACAAAAATGCAGGGAGCTCTGTTTATCAAACCAACTATT 100
Query 78 cttcttcctcttccttcttcagtttcttctccaaagctcacttttcttcttcctcAAGCA 137
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 101 CTTCTTCCTCTTCCTTCTTCAGTTTCTTCTCCAAAACTCACTTTTCTTCTTCCTCACGCA 160
Query 138 ACCAAAGCTTCAAGACTCTCATCTCTCAGATCAAACAACTCATCATC-TC--C-T--TCA 191
||||||||||||||||||||||||||||||||||||||||||||||| || | | | |
Sbjct 161 ACCAAAGCTTCAAGACTCTCATCTCTCAGATCAAACAACTCATCATCATCATCATCCTTA 220
Query 192 ACTTCTGATCCTAACACCGTCGACTACAACTCCTCCATCCTTTCTGTTTTCCCAGCTGAA 251
|| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 221 ACGTCTGACCCTAACACCGTCGACTATAACTCCTCCATCCTTTCTGTTTTTCCAGCTGAA 280
Query 252 GCATGCGAAGTTATCAGTGGATACGCTTGTTCTGCTGACATATACCCTGAAGTCAAGCTC 311
||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 281 GCATGCGAAGTAATCAGTGGATACGCTTGTTCTGCTGATATTTACCCTGAAGTCAAGCTC 340
Query 312 GATACAAAGCCCGTCTCACGTCCCGTGGCTTCAGAGCCCGTTGACAGAGAATACGAAGAG 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 GATACAAAGCCCGTCTCACGTCCCGTGGCTTCAGAGCCCGTTGACAGAGAATACGAAGAG 400
Query 372 TATAACAACCCTAAAACGGTTTTCCGCGAAGAGGCCTGCGATGATCTTGGAGGAGAATTC 431
||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 401 TATAACAGCCCCAAAACGGTTTTCCGTGAAGAGGCCTGCGATGATCTTGGAGGAGAATTC 460
Query 432 TGTGAACCGGGCTATCAAAAAGATGCCAACTAGAAGAAACAAGATTTTATGTCATGTGAA 491
|||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 TGTGAACCTGACTTTCAAAAAGATGCCAACTAGAAGAAACAAGATTTTATGTCATGTGAA 520
Query 492 TATGTGTTTGTATCTCTAGAAGTCTTTGTAACCACTCCTTAATTAATGATATCTAGCTTC 551
||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 521 TATGTGTTTGTATTTCTACAAGTCTTTGTAACCACTCCTTAATTTATGATATCTAGCTTC 580
Query 552 ACTACTTAATCAAGATTGATGTTATGGATCAGACCCGAGTTCCCAAAGTT 601
||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 581 ACTACTTAATCAAGATTGATGTTATGGATTAGACCCGAGTTCCCAAAGTT 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28934868672
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5