BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484449
Length=1888
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-he... 2726 0.0
AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bH... 612 4e-174
> AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein | chr3:9832689-9835087
REVERSE LENGTH=2046
Length=2046
Score = 2726 bits (1476), Expect = 0.0
Identities = 1681/1777 (95%), Gaps = 26/1777 (1%)
Strand=Plus/Plus
Query 125 AAAGGTTCAGACTTTGTGGTAAAGGTCTCAACTTTGACGATGGTTCTTGACGGAAACAAT 184
|||||||||||||||| ||||||||| ||||||||| |||||| ||||||||||||||||
Sbjct 259 AAAGGTTCAGACTTTGGGGTAAAGGTGTCAACTTTGGCGATGGGTCTTGACGGAAACAAT 318
Query 185 GGTGGAGGGGTTTGGTT--A-GGTGGTGGAGGAGAAAGAGAAGAGAACGAGGAAGGTTCT 241
||||||||||||||||| | |||||||| |||||||| ||||||||||||||||||||
Sbjct 319 GGTGGAGGGGTTTGGTTAAACGGTGGTGGTGGAGAAAGGGAAGAGAACGAGGAAGGTTCA 378
Query 242 TGGGGTAGGAATCAAGAAGATGGTTCTTCTCAGTTCAAGCCTATGCTTGAAGGTGATTGG 301
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 379 TGGGGAAGGAATCAAGAAGATGGTTCTTCTCAGTTTAAGCCTATGCTTGAAGGTGATTGG 438
Query 302 -TT--TAGTAACCAAACACATCCACAAGATCTTCAAATGTTACAGAATCAACCAGATTTC 358
|| |||||||||| ||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 439 TTTAGTAGTAACCAACCACATCCACAAGATCTTCAGATGTTACAGAATCAGCCAGATTTC 498
Query 359 AGATTTC-TTGGTGGTTTTCCTTTTAACCCTAATGATAATCTTCTTCTTCAACACTCTAT 417
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 AGA-TACTTTGGTGGTTTTCCTTTTAACCCTAATGATAATCTTCTTCTTCAACACTCTAT 557
Query 418 TGATTCGTCTTCTTCTTGTTCTCCTTCTCAAGCTTTTAGTCTTGACCCTTCTCAGCAAAA 477
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 TGATTCTTCTTCTTCTTGTTCTCCTTCTCAAGCTTTTAGTCTTGACCCTTCTCAGCAAAA 617
Query 478 TCAGTTCTTGTCCACT---AATAACAAGTCTTGTCTTCTCAATGTTCCTTCTTCTGCAAA 534
|||||||||||| ||| || |||||| ||||||||||||||||||||||||||||||
Sbjct 618 TCAGTTCTTGTCAACTAACAACAACAAGGGTTGTCTTCTCAATGTTCCTTCTTCTGCAAA 677
Query 535 CCCTTTTGATAATGCTTTTGAGTTTGGTTCTGAATCTGGTTTTCTTGGTCAAATTCATGC 594
||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||
Sbjct 678 CCCTTTTGATAATGCTTTTGAGTTTGGCTCTGAATCTGGTTTTCTTAACCAAATCCATGC 737
Query 595 TCCTATTTCGATGGGGTTTGGTTCTTTGACACAATTGGGGAACAGGGATTTGAGTTCTGT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 TCCTATTTCGATGGGGTTTGGTTCTTTGACACAATTGGGGAACAGGGATTTGAGTTCTGT 797
Query 655 TCCTGATTTCTTGTCTGCTCGGTCGCTTCTTGGGCCGGAAAGCAACAACAACAACACAAT 714
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 798 TCCTGATTTCTTGTCTGCTCGGTCACTTCTTGCGCCGGAAAGCAACAACAACAACACAAT 857
Query 715 GTTATGTGGTGGAAGTGGTGGATTCACAGCTCCATTGGAGTTAGAAGGATTTGGAAGTCC 774
| | ||| || | ||||| ||||||||||| |||||||| ||||| ||||| |||||
Sbjct 858 G-T-TGT-GT-G--GTGGT---TTCACAGCTCCGTTGGAGTTGGAAGGTTTTGGTAGTCC 908
Query 775 TGCAAATGGCGGTTTTGTCGGGAACAGAGCGAAAGTTCTGAAGCCTTTGGAGGTGTTAGC 834
||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 909 TGCTAATGGTGGTTTTGTTGGGAACAGAGCGAAAGTTCTGAAGCCTTTAGAGGTGTTAGC 968
Query 835 GTCGTCTGGTGCACAGCCTACTCTGTTCCAGAAACGTGCAGCTATGCGTCAGAGCTCTGG 894
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 ATCGTCTGGTGCACAGCCTACTCTGTTCCAGAAACGTGCAGCTATGCGTCAGAGCTCTGG 1028
Query 895 AAGCAAAATGGGAAACTCGGAGAGTTCGGGAATGAGGAGGTTTAGTGATGATGGAGATAT 954
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 AAGCAAAATGGGAAATTCGGAGAGTTCGGGAATGAGGAGGTTTAGTGATGATGGAGATAT 1088
Query 955 GGATGAGACTGGGATTGAGGTTTCAGGGTTGAATTATGAGTCTGATGAGCTAAATGAGAG 1014
|||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||
Sbjct 1089 GGATGAGACTGGGATTGAGGTTTCTGGGTTGAACTATGAGTCTGATGAGATAAATGAGAG 1148
Query 1015 CGGTAAAGCGGCTGAGAGTGTTCAGATTGGAGGAGGAGGTAAGGGTAAGAAGAAAGGAAT 1074
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1149 CGGTAAAGCGGCTGAGAGTGTTCAGATTGGAGGAGGAGGAAAGGGTAAGAAGAAAGGTAT 1208
Query 1075 GCCTGCTAAGAATCTGATGGCTGAGAGGAGAAGGAGGAAGAAGCTTAATGATAGGCTTTA 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 GCCTGCTAAGAATCTGATGGCTGAGAGGAGAAGGAGGAAGAAGCTTAATGATAGGCTTTA 1268
Query 1135 TATGCTTAGATCAGTTGTCCCCAAGATAAGCAAAATGGATAGAGCATCAATACTTGGAGA 1194
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1269 TATGCTTAGATCAGTTGTCCCCAAGATCAGCAAAATGGATAGAGCATCAATACTTGGAGA 1328
Query 1195 TGCAATTGATTATCTCAAGGAACTTTTACAAAGGATCAACGATCTTCACAACGAACTTGA 1254
||||||||||||||| ||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 1329 TGCAATTGATTATCTGAAGGAACTTCTACAAAGGATCAATGATCTTCACAATGAACTTGA 1388
Query 1255 GTCAACTCCTCCTGGATCTTTGCCTCCAACTTCATCAAGCTTCCATCCGTTAACGCCTAC 1314
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1389 GTCAACTCCTCCTGGATCTTTGCCTCCAACTTCATCAAGCTTCCATCCGTTGACACCTAC 1448
Query 1315 ACCGCAGACTCTTTCTTGCCGGGTCAAAGAAGAGTTATGTCCATCTTCTTTGCCAAGTCC 1374
|||||| ||||||||||| || ||||| |||||||| ||||| |||||||| ||||||||
Sbjct 1449 ACCGCAAACTCTTTCTTGTCGTGTCAAGGAAGAGTTGTGTCCCTCTTCTTTACCAAGTCC 1508
Query 1375 TAAAGGCCAGCAAGCTAGAGTTGAGGTTAGATTAAGGGAAGGAAGAGCAGTGAACATTCA 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 TAAAGGCCAGCAAGCTAGAGTTGAGGTTAGATTAAGGGAAGGAAGAGCAGTGAACATTCA 1568
Query 1435 TATGTTCTGTGGTCGTAGACCGGGTCTCTTACTCGCTACCATGAAAGCTTTGGATAATCT 1494
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1569 TATGTTCTGTGGTCGTAGACCGGGTCTGTTGCTCGCTACCATGAAAGCTTTGGATAATCT 1628
Query 1495 TGGATTGGATGTTCAGCAAGCCGTGATCAGCTGTTTCAACGGGTTTGCCTTGGATGTTTT 1554
||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 1629 TGGATTGGATGTTCAGCAAGCTGTGATCAGCTGTTTTAATGGGTTTGCCTTGGATGTTTT 1688
Query 1555 CCGCGCTGAGCAATGCCAAGAAGGACAAGAGATATTGCCTGATCAAATCAAAGCAGTGCT 1614
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1689 CCGCGCTGAGCAATGCCAAGAAGGACAAGAGATACTGCCTGATCAAATCAAAGCAGTGCT 1748
Query 1615 TTTCGATACAGCAGGGTACGCTGGTATGATCTGATCTGATCCTGAGTTCGAGTCCATTAA 1674
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1749 TTTCGATACAGCAGGGTATGCTGGTATGATCTGATCTGATCCTGACTTCGAGTCCATTAA 1808
Query 1675 GCATCTGTTGAAGCAGAGCTAGAAGAACTAAGTCCCTTTAAATCTGCAGTTTTCTTCTCA 1734
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1809 GCATCTGTTGAAGCAGAGCTAGAAGAACTAAGTCCCTTTAAATCTGCAATTTTCTTCTCA 1868
Query 1735 ACtttttttCTT-T-TCTTAACTACAATTTAAGCACGTAATGCAATTGCAAATGAGAGTT 1792
|||||||||||| | || ||||| |||| |||||| ||||||||||||||||||||||||
Sbjct 1869 ACTTTTTTTCTTATGTCATAACTTCAATCTAAGCATGTAATGCAATTGCAAATGAGAGTT 1928
Query 1793 GTTTTTAA-TTAAGCTTTTGAGAACTTGGGGTTGTTGTTGTTGGATACATAACTTCAACC 1851
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1929 GTTTTTAAATTAAGCTTTTGAGAACTTGAGGTTGTTGTTGTTGGATACATAACTTCAACC 1988
Query 1852 TGttttttttATCAATGTTAACTTCCATTTATGTTTC 1888
| ||| || | |||||||||||||||||||||||||
Sbjct 1989 T-TTTATT--AGCAATGTTAACTTCCATTTATGTTTC 2022
Score = 69.4 bits (37), Expect = 1e-10
Identities = 45/48 (94%), Gaps = 3/48 (6%)
Strand=Plus/Plus
Query 94 GAATTGTCTTCAAGCTTCCAAATTTCAGTTAAAAGGT-TCAGACTTTG 140
||||||||||||||||||||||||||||||||| ||| ||| ||||||
Sbjct 199 GAATTGTCTTCAAGCTTCCAAATTTCAGTTAAA-GGTCTCA-ACTTTG 244
> AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:4384353-4386610
FORWARD LENGTH=1976
Length=1976
Score = 612 bits (331), Expect = 4e-174
Identities = 514/599 (86%), Gaps = 26/599 (4%)
Strand=Plus/Plus
Query 1058 GGTAAGAAGAAAGGAATGCCTGCTAAGAATCTGATGGCTGAGAGGAGAAGGAGGAAGAAG 1117
||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||
Sbjct 1180 GGTAAGAAGAAAGGAATGCCTGCAAAGAATCTTATGGCTGAGAGAAGAAGAAGGAAGAAG 1239
Query 1118 CTTAATGATAGGCTTTATATGCTTAGATCAGTTGTCCCCAAGATAAGCAAAATGGATAGA 1177
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1240 CTTAATGATAGGCTTTACATGCTTAGATCAGTTGTTCCCAAGATCAGCAAAATGGATAGA 1299
Query 1178 GCATCAATACTTGGAGATGCAATTGATTATCTCAAGGAACTTTTACAAAGGATCAACGAT 1237
|||||||||||||||||||| |||||||| ||||| || ||||||||||| |||||||||
Sbjct 1300 GCATCAATACTTGGAGATGCTATTGATTACCTCAAAGAGCTTTTACAAAGAATCAACGAT 1359
Query 1238 CTTCACAACGAACTTGAGTCAACTCCTCCTGGATCTTTGCCTCCAACTTCATCAAGCTTC 1297
||||||| ||||||||| || ||||| || | | || | | | || | ||||
Sbjct 1360 CTTCACACCGAACTTGAATCTACTCCACC-G-AG-TT--C-T-----T-CA--A-GCTTG 1404
Query 1298 CATCCGTTAACGCCTACACCGCAGACTCTTTCTTGCCGGGTCAAAGAAGAGTTATGTCCA 1357
||||||||||| || || || || || || |||| ||| || || |||||||| ||||||
Sbjct 1405 CATCCGTTAACACCGACTCCACAAACGCTGTCTTACCGTGTTAAGGAAGAGTTGTGTCCA 1464
Query 1358 TCTTC-T--TTGCCAAGTCCTAAAGGCCAGCAAGCTAGAGTTGAGGTTAGATTAAGGGAA 1414
||||| | |||||||||||||||||||| ||| | |||||||||||||||||||| |||
Sbjct 1465 TCTTCCTCCTTGCCAAGTCCTAAAGGCCAACAACCAAGAGTTGAGGTTAGATTAAGAGAA 1524
Query 1415 GGAAGAG-CAGTGAACATTCATATGTTCTGTGGTCGTAGACCGGGTCTCTTACTCGCTAC 1473
|||| || |||||||||| || ||||||||||| |||||||| ||||| ||||| | ||
Sbjct 1525 GGAA-AGGCAGTGAACATACACATGTTCTGTGGACGTAGACCAGGTCTTTTACTTTCCAC 1583
Query 1474 CATGAAAGCTTTGGATAATCTT-GGATTGGATGTTCAGCAAGCCGTGATCAGCTGTTTCA 1532
||||| |||||||||||| ||| |||||||||||||| ||||| ||||| ||||||||||
Sbjct 1584 CATGAGAGCTTTGGATAA-CTTAGGATTGGATGTTCAACAAGCGGTGATTAGCTGTTTCA 1642
Query 1533 ACGGGTTTGCCTTGGATGTTTTCCGCGCTGAGCAATGCCAAGAAGGACAA-GA-GATATT 1590
| || ||||| |||||||||||||||||||||||||| ||||||| || | || | | ||
Sbjct 1643 ATGGTTTTGCTTTGGATGTTTTCCGCGCTGAGCAATGTCAAGAAG-ACCATGACG-TGTT 1700
Query 1591 GCCTGATCAAATCAAAGCAGTGCTTTTCGATACAGCAGGGTACGCTGGTATGATCTGAT 1649
||||| |||||||||||||||||||| ||||||||||| ||||||||| || | ||||
Sbjct 1701 ACCTGAACAAATCAAAGCAGTGCTTTTAGATACAGCAGGTTACGCTGGTTTGGTTTGAT 1759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93473414790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5