BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484450
Length=1712
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26750.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ubiquitin... 2170 0.0
> AT3G26750.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating
enzyme E2C-binding protein (InterPro:IPR019193);
Has 26 Blast hits to 25 proteins in 9 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9839976-9842079
REVERSE LENGTH=2104
Length=2104
Score = 2170 bits (1175), Expect = 0.0
Identities = 1461/1597 (91%), Gaps = 28/1597 (2%)
Strand=Plus/Plus
Query 50 AAAACATCGAAACAGAGCAA--T-T--TTCAATGGAGCAAAACCCTAAAACCCAGAGGAC 104
|||| |||||| |||||||| | | ||| |||||||||||| ||||||||||||||||
Sbjct 364 AAAA-ATCGAAGCAGAGCAATTTCTAATTCCATGGAGCAAAACTCTAAAACCCAGAGGAC 422
Query 105 ATGGAGATACACATGGGAAGCTCAATCTCATTCTCCTAATCTTCGTCTCTTTCTTTTCGA 164
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 423 ATGGAGATACACATGGGAAGCTCAATCTCATTCTCCAAACCTTCGTCTCTTTCTTTTCGA 482
Query 165 TTCCACAACAAACCCTAAGATCCACTGCAAAATCCTCAATGTCTCAATCATCCTCGAAAA 224
||||| ||| |||||||||||||||||||||| ||||||||| |||| |||| ||| |||
Sbjct 483 TTCCAAAACTAACCCTAAGATCCACTGCAAAAGCCTCAATGTATCAACCATCGTCGGAAA 542
Query 225 ATCTCAACTTCTCGTCACATGGAT---C-----A-ATGAAGAAGCCACACGCAAAGAAGA 275
|||||||||||||||||||||||| | | |||||||||| || ||||||||||
Sbjct 543 ATCTCAACTTCTCGTCACATGGATCAACGAAGAAGATGAAGAAGCTGCAAGCAAAGAAGA 602
Query 276 GATTGTTTCTCTTCAT-GTTCCGATTCCTAAGGTTTTACTTGATACTGAATCTCATGTAA 334
|||||||||||||| | ||||| || |||| ||| ||||| ||||||||||||| |||||
Sbjct 603 GATTGTTTCTCTTC-TAGTTCCTATCCCTAGGGTCTTACTAGATACTGAATCTCCTGTAA 661
Query 335 ATTTCAAAGCTTTAGAGGATCACATCGAGGTAAGACTTGTTCTGTTACTCCCTGTTGATC 394
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 662 ATTTCAAAGCTTTAGACGATCACATCGAGGTTAGACTTGTTCTGTTACTCCCTGTTGATC 721
Query 395 ATCCTCTAGTCTCAGACTTCAATTTAGTGACTGATTCTAGAGAAAAGTCGAAGCCTTTAG 454
||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 722 ATCCTTTAGTCTCAGACTTCAATTTGGTGACTGATTCTAGAGAAAAGTCGGCGCCTTTAG 781
Query 455 TGATGGGTTATGATTTGAAGACTCTATCTTTAATGGGAGGAGTTCACTTTTACTGTAGAA 514
|||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 782 TGATGGGTTATGATCTAAAGACTCTATCTTTAATGGGAGGAGTTCATTTTTACTGTAGAA 841
Query 515 GTTGCTCAAATAGGTTAACAAAGAAGGAACTTTTCGATTTCTCTGAAATGCCGTCTATTA 574
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 842 GTTGTTCAAATAGGTTAACAAAGAAGGAACTTTTAGATTTCTCAGAAATGCCGTCTATTA 901
Query 575 ATTGGAGAGAATCTGCTGATAATTGGTTTGGTACTTGTTGTTGTTCATTTGGTGGAATTA 634
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 ATTGGAGAGAATCAGCTGATAATTGGTTTGGTACTTGTTGTTGTTCATTTGGTGGAATTA 961
Query 635 GTGAGAAGATGGTAGTTAAGTACACGAATTCGTATACTTGCTCTAGTGGGTTGTGTTTGC 694
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 962 GTGAGAAGATGGTTGTTAAGTACACGAATTCGTATACTTGCTCTAGTGGGTTGTGTTTAC 1021
Query 695 TTAGTGCTACTACTGTTTTGCTTAGCAAGGATGATCTTGTAGAGTGTAGCTTTTCTGATA 754
|||||||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||| |
Sbjct 1022 TTAGTGCTACTACTGTGTTGCTTAGCAAAGATGATCTTGTAGAGTGTATCTTGTCTGAGA 1081
Query 755 AAGGTGGAATTGTAGACGAATTTGATTCGAGTGTAGCTCTGAGTTGTGATATTGGTGTAG 814
||||||||| || || ||||||||| |||||| ||||| ||||||||||| |||||||||
Sbjct 1082 AAGGTGGAACTGAAGTCGAATTTGAGTCGAGTTTAGCTTTGAGTTGTGATGTTGGTGTAG 1141
Query 815 TTGAACCGGGTTCTAGAAGTAGTGAAGGAAATGCTGAGAGTCATGAGAATGGAGGTGAGA 874
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1142 TTGAACCGGGTTCTAGAATTAGTGAAGGAAATGCTGAGAGTCATGAGAGTGGAGGTGAGA 1201
Query 875 GTGTTTGCGGTCAAGCGGATGACTCGATTTTGCGTTGTATAGGTAATGAATCACTACCTG 934
|||||| ||||||| |||||| |||| ||||||||||| ||| | |||||||||||
Sbjct 1202 ATGTTTGTGGTCAAGTGGATGAATCGAAGACGCGTTGTATAGATAAGGCATCACTACCTG 1261
Query 935 GGTGTTGTGTACATGACTTGCCTGACTCTAATGAGAGTTTTCAG-T--TGGAGCAGAAAC 991
| |||||||||||||||| ||||||||||||||||||| ||||| | |||| ||||||
Sbjct 1262 GATGTTGTGTACATGACTCGCCTGACTCTAATGAGAGTGTTCAGCTGGAGGAGAAGAAAC 1321
Query 992 TTACACTTGATAAGAAGTTTCTTCTTGATGGGTTTCTTGAGGATGTTTTTATGGCGAAAG 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 TTACACTTGATAAGAAGTTTCTTCTTGATGGGTTTCTTGAGGATGTTTTTATGGCGAAAG 1381
Query 1052 CATCGAATGTGTCGAAGAATGTCGACTGGATTGAATTTGCTTGCCCAAAGTGTTACTCTC 1111
| || |||||||| ||||||||||| |||||||||||||||||||| |||||| |||||
Sbjct 1382 CGTCAAATGTGTCAAAGAATGTCGAGTGGATTGAATTTGCTTGCCCTGAGTGTTCCTCTC 1441
Query 1112 CTCTTGGAGCTTATCCTTCTGGTGGTGGAAGCAA-GGATAAACCCATAGATGGTGGAGTT 1170
|||||||||| ||||||||||||| ||| ||||| || ||||||||| ||||||||||||
Sbjct 1442 CTCTTGGAGCCTATCCTTCTGGTGTTGGGAGCAACGG-TAAACCCATTGATGGTGGAGTT 1500
Query 1171 AGACTCTTCAAATGCTATATTTCCACATCATCGGTGACGGGTGAATCCT-TAAATGTTTT 1229
||||||||||||||||||||||||||||||||| |||||||||||||| | | |||||
Sbjct 1501 AGACTCTTCAAATGCTATATTTCCACATCATCGACGACGGGTGAATCCTCTGAC-GTTTT 1559
Query 1230 CAGGAAATACACATTGGAAAGAATGTTTACCAATCAGCTAGTGGAATGCGCCAAAGAAGA 1289
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 1560 CAGGAAATACACATTGGAAAGAATGTTTACGAATCAGCTAGTGGAATGCTCCAAAGAGGA 1619
Query 1290 GTTATCATTTCATGTGTTGGTCAAAGATCTGACAACCAAATCCCCTCTGTTCAATATCGT 1349
|||||||||||| ||||||||||||||| ||||||| ||||| ||||||||||| |||||
Sbjct 1620 GTTATCATTTCACGTGTTGGTCAAAGATTTGACAACTAAATCACCTCTGTTCAACATCGT 1679
Query 1350 TATCCTGAATCCAAACTC-TTGGTCCTCGACTGGTCTTTGCTCGAGCCGAGATGAACCAG 1408
||| ||||||||||| | || ||||||||||||||||||||||||| |||||||||||
Sbjct 1680 TATTTTGAATCCAAACACATTT-TCCTCGACTGGTCTTTGCTCGAGCCAAGATGAACCAG 1738
Query 1409 ATTCCACATTAGAGTTAAGCGCTATTGTGAAGGTTCTGTTTTCAGATTGCAACAGCTCGG 1468
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1739 GTTCCGCATTAGAGTTAAGCGCTATTGTGAAGGTTCTGTTTTCTGATTGCAACAGCTCGG 1798
Query 1469 TAGCAAAGAAGATTGATGAAGAAGTTTACATTTTGAAGGGACAAGGAGAGGAGTTGATAG 1528
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1799 TAGTGAAGAAGATTGATGAAGAAGTATACATTTTGAAGGGACAAGGAGAGGAGTTGATAG 1858
Query 1529 AGTTAATAAA-ATATGCGAGCAAATTTCTTCCATCTTCGTATACATATCTTCAGGGCTCA 1587
||||||||| | |||| |||||||||||||||||||||| | |||||||||| ||| ||
Sbjct 1859 AGTTAATAACGA-ATGCAAGCAAATTTCTTCCATCTTCGTGTTCATATCTTCAAGGCGCA 1917
Query 1588 CTTGTCTCATCAATGCATCGATGATAATGAATCtttt 1624
||||||||||| ||||||| |||||||||||||||||
Sbjct 1918 CTTGTCTCATCGATGCATCTATGATAATGAATCTTTT 1954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84638118870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5