BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484450 Length=1712 Score E Sequences producing significant alignments: (Bits) Value AT3G26750.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ubiquitin... 2170 0.0 > AT3G26750.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme E2C-binding protein (InterPro:IPR019193); Has 26 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9839976-9842079 REVERSE LENGTH=2104 Length=2104 Score = 2170 bits (1175), Expect = 0.0 Identities = 1461/1597 (91%), Gaps = 28/1597 (2%) Strand=Plus/Plus Query 50 AAAACATCGAAACAGAGCAA--T-T--TTCAATGGAGCAAAACCCTAAAACCCAGAGGAC 104 |||| |||||| |||||||| | | ||| |||||||||||| |||||||||||||||| Sbjct 364 AAAA-ATCGAAGCAGAGCAATTTCTAATTCCATGGAGCAAAACTCTAAAACCCAGAGGAC 422 Query 105 ATGGAGATACACATGGGAAGCTCAATCTCATTCTCCTAATCTTCGTCTCTTTCTTTTCGA 164 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 423 ATGGAGATACACATGGGAAGCTCAATCTCATTCTCCAAACCTTCGTCTCTTTCTTTTCGA 482 Query 165 TTCCACAACAAACCCTAAGATCCACTGCAAAATCCTCAATGTCTCAATCATCCTCGAAAA 224 ||||| ||| |||||||||||||||||||||| ||||||||| |||| |||| ||| ||| Sbjct 483 TTCCAAAACTAACCCTAAGATCCACTGCAAAAGCCTCAATGTATCAACCATCGTCGGAAA 542 Query 225 ATCTCAACTTCTCGTCACATGGAT---C-----A-ATGAAGAAGCCACACGCAAAGAAGA 275 |||||||||||||||||||||||| | | |||||||||| || |||||||||| Sbjct 543 ATCTCAACTTCTCGTCACATGGATCAACGAAGAAGATGAAGAAGCTGCAAGCAAAGAAGA 602 Query 276 GATTGTTTCTCTTCAT-GTTCCGATTCCTAAGGTTTTACTTGATACTGAATCTCATGTAA 334 |||||||||||||| | ||||| || |||| ||| ||||| ||||||||||||| ||||| Sbjct 603 GATTGTTTCTCTTC-TAGTTCCTATCCCTAGGGTCTTACTAGATACTGAATCTCCTGTAA 661 Query 335 ATTTCAAAGCTTTAGAGGATCACATCGAGGTAAGACTTGTTCTGTTACTCCCTGTTGATC 394 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 662 ATTTCAAAGCTTTAGACGATCACATCGAGGTTAGACTTGTTCTGTTACTCCCTGTTGATC 721 Query 395 ATCCTCTAGTCTCAGACTTCAATTTAGTGACTGATTCTAGAGAAAAGTCGAAGCCTTTAG 454 ||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct 722 ATCCTTTAGTCTCAGACTTCAATTTGGTGACTGATTCTAGAGAAAAGTCGGCGCCTTTAG 781 Query 455 TGATGGGTTATGATTTGAAGACTCTATCTTTAATGGGAGGAGTTCACTTTTACTGTAGAA 514 |||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 782 TGATGGGTTATGATCTAAAGACTCTATCTTTAATGGGAGGAGTTCATTTTTACTGTAGAA 841 Query 515 GTTGCTCAAATAGGTTAACAAAGAAGGAACTTTTCGATTTCTCTGAAATGCCGTCTATTA 574 |||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 842 GTTGTTCAAATAGGTTAACAAAGAAGGAACTTTTAGATTTCTCAGAAATGCCGTCTATTA 901 Query 575 ATTGGAGAGAATCTGCTGATAATTGGTTTGGTACTTGTTGTTGTTCATTTGGTGGAATTA 634 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 902 ATTGGAGAGAATCAGCTGATAATTGGTTTGGTACTTGTTGTTGTTCATTTGGTGGAATTA 961 Query 635 GTGAGAAGATGGTAGTTAAGTACACGAATTCGTATACTTGCTCTAGTGGGTTGTGTTTGC 694 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 962 GTGAGAAGATGGTTGTTAAGTACACGAATTCGTATACTTGCTCTAGTGGGTTGTGTTTAC 1021 Query 695 TTAGTGCTACTACTGTTTTGCTTAGCAAGGATGATCTTGTAGAGTGTAGCTTTTCTGATA 754 |||||||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||| | Sbjct 1022 TTAGTGCTACTACTGTGTTGCTTAGCAAAGATGATCTTGTAGAGTGTATCTTGTCTGAGA 1081 Query 755 AAGGTGGAATTGTAGACGAATTTGATTCGAGTGTAGCTCTGAGTTGTGATATTGGTGTAG 814 ||||||||| || || ||||||||| |||||| ||||| ||||||||||| ||||||||| Sbjct 1082 AAGGTGGAACTGAAGTCGAATTTGAGTCGAGTTTAGCTTTGAGTTGTGATGTTGGTGTAG 1141 Query 815 TTGAACCGGGTTCTAGAAGTAGTGAAGGAAATGCTGAGAGTCATGAGAATGGAGGTGAGA 874 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 1142 TTGAACCGGGTTCTAGAATTAGTGAAGGAAATGCTGAGAGTCATGAGAGTGGAGGTGAGA 1201 Query 875 GTGTTTGCGGTCAAGCGGATGACTCGATTTTGCGTTGTATAGGTAATGAATCACTACCTG 934 |||||| ||||||| |||||| |||| ||||||||||| ||| | ||||||||||| Sbjct 1202 ATGTTTGTGGTCAAGTGGATGAATCGAAGACGCGTTGTATAGATAAGGCATCACTACCTG 1261 Query 935 GGTGTTGTGTACATGACTTGCCTGACTCTAATGAGAGTTTTCAG-T--TGGAGCAGAAAC 991 | |||||||||||||||| ||||||||||||||||||| ||||| | |||| |||||| Sbjct 1262 GATGTTGTGTACATGACTCGCCTGACTCTAATGAGAGTGTTCAGCTGGAGGAGAAGAAAC 1321 Query 992 TTACACTTGATAAGAAGTTTCTTCTTGATGGGTTTCTTGAGGATGTTTTTATGGCGAAAG 1051 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1322 TTACACTTGATAAGAAGTTTCTTCTTGATGGGTTTCTTGAGGATGTTTTTATGGCGAAAG 1381 Query 1052 CATCGAATGTGTCGAAGAATGTCGACTGGATTGAATTTGCTTGCCCAAAGTGTTACTCTC 1111 | || |||||||| ||||||||||| |||||||||||||||||||| |||||| ||||| Sbjct 1382 CGTCAAATGTGTCAAAGAATGTCGAGTGGATTGAATTTGCTTGCCCTGAGTGTTCCTCTC 1441 Query 1112 CTCTTGGAGCTTATCCTTCTGGTGGTGGAAGCAA-GGATAAACCCATAGATGGTGGAGTT 1170 |||||||||| ||||||||||||| ||| ||||| || ||||||||| |||||||||||| Sbjct 1442 CTCTTGGAGCCTATCCTTCTGGTGTTGGGAGCAACGG-TAAACCCATTGATGGTGGAGTT 1500 Query 1171 AGACTCTTCAAATGCTATATTTCCACATCATCGGTGACGGGTGAATCCT-TAAATGTTTT 1229 ||||||||||||||||||||||||||||||||| |||||||||||||| | | ||||| Sbjct 1501 AGACTCTTCAAATGCTATATTTCCACATCATCGACGACGGGTGAATCCTCTGAC-GTTTT 1559 Query 1230 CAGGAAATACACATTGGAAAGAATGTTTACCAATCAGCTAGTGGAATGCGCCAAAGAAGA 1289 |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || Sbjct 1560 CAGGAAATACACATTGGAAAGAATGTTTACGAATCAGCTAGTGGAATGCTCCAAAGAGGA 1619 Query 1290 GTTATCATTTCATGTGTTGGTCAAAGATCTGACAACCAAATCCCCTCTGTTCAATATCGT 1349 |||||||||||| ||||||||||||||| ||||||| ||||| ||||||||||| ||||| Sbjct 1620 GTTATCATTTCACGTGTTGGTCAAAGATTTGACAACTAAATCACCTCTGTTCAACATCGT 1679 Query 1350 TATCCTGAATCCAAACTC-TTGGTCCTCGACTGGTCTTTGCTCGAGCCGAGATGAACCAG 1408 ||| ||||||||||| | || ||||||||||||||||||||||||| ||||||||||| Sbjct 1680 TATTTTGAATCCAAACACATTT-TCCTCGACTGGTCTTTGCTCGAGCCAAGATGAACCAG 1738 Query 1409 ATTCCACATTAGAGTTAAGCGCTATTGTGAAGGTTCTGTTTTCAGATTGCAACAGCTCGG 1468 |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1739 GTTCCGCATTAGAGTTAAGCGCTATTGTGAAGGTTCTGTTTTCTGATTGCAACAGCTCGG 1798 Query 1469 TAGCAAAGAAGATTGATGAAGAAGTTTACATTTTGAAGGGACAAGGAGAGGAGTTGATAG 1528 ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1799 TAGTGAAGAAGATTGATGAAGAAGTATACATTTTGAAGGGACAAGGAGAGGAGTTGATAG 1858 Query 1529 AGTTAATAAA-ATATGCGAGCAAATTTCTTCCATCTTCGTATACATATCTTCAGGGCTCA 1587 ||||||||| | |||| |||||||||||||||||||||| | |||||||||| ||| || Sbjct 1859 AGTTAATAACGA-ATGCAAGCAAATTTCTTCCATCTTCGTGTTCATATCTTCAAGGCGCA 1917 Query 1588 CTTGTCTCATCAATGCATCGATGATAATGAATCtttt 1624 ||||||||||| ||||||| ||||||||||||||||| Sbjct 1918 CTTGTCTCATCGATGCATCTATGATAATGAATCTTTT 1954 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84638118870 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5