BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484454 Length=1996 Score E Sequences producing significant alignments: (Bits) Value AT3G26782.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3066 0.0 AT4G16835.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 89.8 9e-17 > AT3G26782.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:9850570-9852864 FORWARD LENGTH=2186 Length=2186 Score = 3066 bits (1660), Expect = 0.0 Identities = 1890/2002 (94%), Gaps = 12/2002 (1%) Strand=Plus/Plus Query 1 GAATGAATGAAGGTTCCGAGTAAAAAAGCACTGTTCTGTTCCGTCTCTCGTCTTCTCCAC 60 |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| Sbjct 19 GAATGAATGAAGGTTCGGAGTAAAAAAGCACTGTTTTGTTCCGTCTCTCGTCTTCTCCAC 78 Query 61 ACGGAGAGACACACAGAGAGACAAAACCTAACGACTTTGTTCAACAGATATGTCGACAAA 120 |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 79 ACGGAGAGACACACAGAGAGACAAAACCTAACAACGCTGTTCAACAGATATGTCGACAAA 138 Query 121 ACAGATGTCTTCTCATGGAACTCTGTCATCGCCGACCTCGCTCGTAGCGGTGATTCTGCT 180 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 139 ACAGATGTTTTCTCATGGAACTCTGTCATCGCCGACCTCGCTCGTAGCGGTGATTCTGCT 198 Query 181 GAAGCTCTTCGAGCTTTTTCCTCAATGCGAAAACTCTCTCTATACCCAACTCGCTCTAGC 240 |||||||||| ||||||||||||||||| || || |||||||||||||||||||||||| Sbjct 199 GAAGCTCTTCTCGCTTTTTCCTCAATGCGGAAGCTTTCTCTATACCCAACTCGCTCTAGC 258 Query 241 TTTCCTTGCGCCATTAAAGCATGTTCGTCTCTTCTTGATATCTTCTCCGGAAAACAGACC 300 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 259 TTTCCTTGCGCCATTAAAGCATGTTCGTCTCTTTTTGATATCTTCTCCGGCAAACAGACC 318 Query 301 CATCAGCAAGCTTTTGTCTTCGGTTATCAATCTGACATCTTTGTGTCTTCGGCTTTGATC 360 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 319 CATCAGCAAGCTTTTGTCTTCGGTTATCAATCCGACATCTTTGTGTCTTCGGCTTTGATC 378 Query 361 GTTATGTATTCAACTTGTGGGCAACTTGAGGATGCACGGAAGGTGTTCGACGAAATTCCC 420 ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||| Sbjct 379 GTTATGTATTCAACTTGTGGGAAACTGGAGGATGCACGGAAAGTGTTCGACGAAATTCCC 438 Query 421 AAGAGAAATATTGTTTCTTGGACTTCGATGATTCGAGGGTATGATCTTAACGGTAACGCC 480 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 439 AAGAGAAATATTGTATCTTGGACTTCGATGATTCGAGGGTATGATCTTAACGGTAATGCC 498 Query 481 CTTGATGCTGTTTCTCTATTT-AAGGATTTATTGATCGAAGAAAATGATGATGACGCTAC 539 ||||||||||||||||| ||| |||||| ||||| |||| |||||||||||||||| | | Sbjct 499 CTTGATGCTGTTTCTCT-TTTCAAGGATCTATTGGTCGATGAAAATGATGATGACGATGC 557 Query 540 AATGTTTCTTGATTCTATGGGTATGGTTTCGGTAATCTCGGCTTGTTCTCGTGTTGCTGC 599 |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||| Sbjct 558 AATGTTTCTTGATTCTATGGGTTTGGTTTCGGTAATCTCTGCTTGTTCTCGTGTTCCTGC 617 Query 600 TAAAGGTTTAACTGCATCAATTCATAGCTTTGTGATAAAAAGAGGGTTTGATAGAGGAGT 659 ||| |||||||| | ||| ||||||||||||||||| || ||||| |||||||||||||| Sbjct 618 TAAGGGTTTAACGGAATCTATTCATAGCTTTGTGATTAAGAGAGGTTTTGATAGAGGAGT 677 Query 660 GAGTGTTGGTAATACTCTTTTGGATGCTTATGCTAAGGGCGGAGAAGGAGGTGTAGCTGT 719 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 678 GAGTGTTGGTAATACTCTTTTGGATGCTTATGCTAAGGGTGGAGAAGGAGGTGTTGCTGT 737 Query 720 GGCGAGAAAAATCTTTGATCAGATTGTGGATAAGGATCGTGTTTCGTATAATTCGATTAT 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 738 GGCGAGAAAAATCTTTGATCAGATTGTGGATAAGGATCGTGTTTCGTATAATTCGATTAT 797 Query 780 GAGTGTTTATGCTCAGAATGGGATGTCTAATGAGGCTTTTGATGTTTTTCGTAGAC-TGA 838 |||||| |||||||||| |||||||||||||||||||||||| ||||||||||||| || Sbjct 798 GAGTGTGTATGCTCAGAGTGGGATGTCTAATGAGGCTTTTGAGGTTTTTCGTAGACTTG- 856 Query 839 TTAAGGAGAAAGTTGTGACCTTTAACTCCATTACATTGTCTACTGTGTTGTTGGCAGTTT 898 ||||| | |||||||||||||||||| |||||||||||||||||||||||||||| || | Sbjct 857 TTAAGAATAAAGTTGTGACCTTTAACGCCATTACATTGTCTACTGTGTTGTTGGCGGTCT 916 Query 899 CGCATTCGGGTGCTCTCCGTATTGGAAAGTGTATACATGATCAGGTAATAAGGATGGGTC 958 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 917 CGCATTCAGGTGCTCTGCGTATTGGAAAGTGTATACATGATCAGGTAATAAGGATGGGTC 976 Query 959 TTGAGGATGACGTGATAGTTGGGACATCGATAATTGATATGTATTGCAAATGTGGAAGAG 1018 |||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||| Sbjct 977 TTGAGGATGATGTGATAGTGGGGACGTCGATAATTGATATGTATTGCAAATGCGGAAGAG 1036 Query 1019 TGGAGACGGCAAGATTAGCATTTGATCGAATGAAAAACAAGAATGTTAGGTCGTGGACCG 1078 | |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1037 TTGAGACGGCGAGAAAAGCATTTGATCGAATGAAAAACAAGAATGTTAGGTCGTGGACCG 1096 Query 1079 CCATGATTGCTGGATATGGAATGCATGGCCATGCGGCTAAAGCGTTAGAGTTATTCCCTG 1138 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1097 CCATGATTGCTGGATATGGAATGCACGGCCACGCGGCTAAAGCGTTAGAGTTATTCCCTG 1156 Query 1139 CTATGATCGATTCAGGGGTTAGACCAAATTACATTACTTTTGTATCGGTGTTAGCTGCTT 1198 |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 1157 CTATGATCGATTCAGGGGTTCGACCAAATTACATTACTTTTGTATCAGTGTTAGCTGCTT 1216 Query 1199 GCAGTCACGCGGGTCTTCATGAT-GTAGGCTGGCACTGGTTTAACGCGATGAAGGGAAGA 1257 ||||||| ||||||||||||| | | |||||||| |||||||||||| |||||||| ||| Sbjct 1217 GCAGTCATGCGGGTCTTCATG-TGGAAGGCTGGCGCTGGTTTAACGCAATGAAGGGGAGA 1275 Query 1258 TTCGGCGTGGAACC-GGGTTTAGAACACTATGGTTGTATGGTTGATCTTCTAGGTCGAGC 1316 || || |||||||| ||| ||||||||||| |||||||||||||||||||||||| |||| Sbjct 1276 TTTGGTGTGGAACCAGGG-TTAGAACACTACGGTTGTATGGTTGATCTTCTAGGTAGAGC 1334 Query 1317 TGGGTTTCTTCAGAAAGCTTATGATTTGACTCAGAAAATGAAGATGGAGCCGGACTCTAT 1376 ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| Sbjct 1335 TGGGTTTCTTCAGAAAGCTTATGATTTGATTCAGAGAATGAAGATGAAGCCGGACTCTAT 1394 Query 1377 CATCTGGAGCTCACTTCTTGCAGCTTGTAGAATTCACAAGAACGTGGAGCTCGCTGAGAT 1436 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1395 CATCTGGAGCTCACTTCTTGCAGCTTGTAGAATTCACAAGAACGTGGAGCTAGCTGAGAT 1454 Query 1437 ATCCGTGGCACGTTTGTTCGAATTGGATC-CTTCGAACTGCGGTTATTACATGCTGCTTT 1495 ||||||||| |||||||| |||||||| | ||||||| |||||||| ||||||||||||| Sbjct 1455 ATCCGTGGCGCGTTTGTTTGAATTGGA-CTCTTCGAATTGCGGTTACTACATGCTGCTTT 1513 Query 1496 CGCATATTTACGCTGATGCGGGGCGTTGGAAAGATGTTGAGAGGGTGAGAATGATAATGA 1555 ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 1514 CGCATATCTACGCTGATGCGGGTCGTTGGAAAGATGTTGAGAGGGTGAGAATGATCATGA 1573 Query 1556 AGAATCGTGGATTGGTGAAACCCCCGGGTTTTAGCCTACTTGAGTTAAATGGTGAGGTTC 1615 ||||||| |||||||||||||| || |||||||| ||||| ||||| ||||||||||||| Sbjct 1574 AGAATCGCGGATTGGTGAAACCGCCAGGTTTTAGTCTACTCGAGTTGAATGGTGAGGTTC 1633 Query 1616 ATGTGTTCTTGATAGGAGACGAAGAGCATCCTCAACGCGAGAAGATTTACGAGTTTTTAG 1675 ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||| Sbjct 1634 ATGTGTTCTTGATCGGAGACGAAGAGCATCCTCAGCGTGAGAAGATTTACGAGTTTTTAG 1693 Query 1676 CAGAACTGAACCGGAAGCTGTTAGAGGCAGGTTACGTATCGAACACGTCATCTGTATGTC 1735 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1694 CAGAACTGAACAGGAAGCTGTTAGAGGCAGGTTACGTATCGAACACGTCATCTGTATGTC 1753 Query 1736 ATGATGTTGATGAGGAAGAGAAAGAGATGACACTGAGAGTTCACAGCGAGAAACTAGCGA 1795 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1754 ATGATGTTGATGAGGAAGAGAAAGAGATGACACTGAGAGTTCACAGCGAGAAACTAGCGA 1813 Query 1796 TTGCGTTTGGGATCATGAACACGGTTCCTGGCTCGACGGTTAACGTGGTTAAGAATCTGA 1855 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1814 TTGCGTTTGGGATCATGAACACGGTTCCTGGCTCGACGGTTAATGTGGTCAAGAATCTGA 1873 Query 1856 GAGTTTGCAGCGATTGTCATAATGTGATCAAGTTGATTTCAAAGATTGTTGATAGAGAGT 1915 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1874 GAGTTTGCAGCGATTGTCACAATGTGATCAAGTTGATTTCAAAGATTGTTGATAGAGAGT 1933 Query 1916 TTGTGGTTAGAGATACGAAGCGGTTTCACCATTTCAAAGATGG-GTCTTGCTCTTGTGGC 1974 |||||||||||||| ||||| |||||||||||||||||||||| | | | || ||||| Sbjct 1934 TTGTGGTTAGAGATGCGAAGAGGTTTCACCATTTCAAAGATGGTGGAT-GTTCCTGTGGA 1992 Query 1975 GATTATTGGTGATTCGATATTA 1996 ||||| |||||||| ||||||| Sbjct 1993 GATTACTGGTGATTAGATATTA 2014 > AT4G16835.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:9472763-9474803 FORWARD LENGTH=1971 Length=1971 Score = 89.8 bits (48), Expect = 9e-17 Identities = 116/148 (78%), Gaps = 7/148 (5%) Strand=Plus/Plus Query 1843 GTT-AAGAATC-TGAGAGTTTGCAGCGATTGTCATAATGTGATCAAGTTGATTTCAAAGA 1900 ||| ||||| | ||||| | || | ||||||||||| | ||||| || || || ||| Sbjct 1827 GTTCAAGAA-CTTGAGAATCTGTGGTGATTGTCATAAAGCAATCAAATTTATCTCGGAGA 1885 Query 1901 TTGTTGATA-GAGAGTTTGTGGTTAGAGATACGA-AGCGGTTTCACCATTTCAAAGATGG 1958 | | || | ||||| | | || ||||| || | | |||||||||||||||||||||| Sbjct 1886 TAG-AGAAACGAGAGATCATTGTAAGAGACACCACA-AGGTTTCACCATTTCAAAGATGG 1943 Query 1959 GTCTTGCTCTTGTGGCGATTATTGGTGA 1986 ||||||||||||||||||||| |||||| Sbjct 1944 GTCTTGCTCTTGTGGCGATTACTGGTGA 1971 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98895073650 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5