BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484454
Length=1996
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26782.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3066 0.0
AT4G16835.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 89.8 9e-17
> AT3G26782.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:9850570-9852864 FORWARD LENGTH=2186
Length=2186
Score = 3066 bits (1660), Expect = 0.0
Identities = 1890/2002 (94%), Gaps = 12/2002 (1%)
Strand=Plus/Plus
Query 1 GAATGAATGAAGGTTCCGAGTAAAAAAGCACTGTTCTGTTCCGTCTCTCGTCTTCTCCAC 60
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 19 GAATGAATGAAGGTTCGGAGTAAAAAAGCACTGTTTTGTTCCGTCTCTCGTCTTCTCCAC 78
Query 61 ACGGAGAGACACACAGAGAGACAAAACCTAACGACTTTGTTCAACAGATATGTCGACAAA 120
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 79 ACGGAGAGACACACAGAGAGACAAAACCTAACAACGCTGTTCAACAGATATGTCGACAAA 138
Query 121 ACAGATGTCTTCTCATGGAACTCTGTCATCGCCGACCTCGCTCGTAGCGGTGATTCTGCT 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 ACAGATGTTTTCTCATGGAACTCTGTCATCGCCGACCTCGCTCGTAGCGGTGATTCTGCT 198
Query 181 GAAGCTCTTCGAGCTTTTTCCTCAATGCGAAAACTCTCTCTATACCCAACTCGCTCTAGC 240
|||||||||| ||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 199 GAAGCTCTTCTCGCTTTTTCCTCAATGCGGAAGCTTTCTCTATACCCAACTCGCTCTAGC 258
Query 241 TTTCCTTGCGCCATTAAAGCATGTTCGTCTCTTCTTGATATCTTCTCCGGAAAACAGACC 300
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 259 TTTCCTTGCGCCATTAAAGCATGTTCGTCTCTTTTTGATATCTTCTCCGGCAAACAGACC 318
Query 301 CATCAGCAAGCTTTTGTCTTCGGTTATCAATCTGACATCTTTGTGTCTTCGGCTTTGATC 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 319 CATCAGCAAGCTTTTGTCTTCGGTTATCAATCCGACATCTTTGTGTCTTCGGCTTTGATC 378
Query 361 GTTATGTATTCAACTTGTGGGCAACTTGAGGATGCACGGAAGGTGTTCGACGAAATTCCC 420
||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||
Sbjct 379 GTTATGTATTCAACTTGTGGGAAACTGGAGGATGCACGGAAAGTGTTCGACGAAATTCCC 438
Query 421 AAGAGAAATATTGTTTCTTGGACTTCGATGATTCGAGGGTATGATCTTAACGGTAACGCC 480
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 439 AAGAGAAATATTGTATCTTGGACTTCGATGATTCGAGGGTATGATCTTAACGGTAATGCC 498
Query 481 CTTGATGCTGTTTCTCTATTT-AAGGATTTATTGATCGAAGAAAATGATGATGACGCTAC 539
||||||||||||||||| ||| |||||| ||||| |||| |||||||||||||||| | |
Sbjct 499 CTTGATGCTGTTTCTCT-TTTCAAGGATCTATTGGTCGATGAAAATGATGATGACGATGC 557
Query 540 AATGTTTCTTGATTCTATGGGTATGGTTTCGGTAATCTCGGCTTGTTCTCGTGTTGCTGC 599
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct 558 AATGTTTCTTGATTCTATGGGTTTGGTTTCGGTAATCTCTGCTTGTTCTCGTGTTCCTGC 617
Query 600 TAAAGGTTTAACTGCATCAATTCATAGCTTTGTGATAAAAAGAGGGTTTGATAGAGGAGT 659
||| |||||||| | ||| ||||||||||||||||| || ||||| ||||||||||||||
Sbjct 618 TAAGGGTTTAACGGAATCTATTCATAGCTTTGTGATTAAGAGAGGTTTTGATAGAGGAGT 677
Query 660 GAGTGTTGGTAATACTCTTTTGGATGCTTATGCTAAGGGCGGAGAAGGAGGTGTAGCTGT 719
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 678 GAGTGTTGGTAATACTCTTTTGGATGCTTATGCTAAGGGTGGAGAAGGAGGTGTTGCTGT 737
Query 720 GGCGAGAAAAATCTTTGATCAGATTGTGGATAAGGATCGTGTTTCGTATAATTCGATTAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 GGCGAGAAAAATCTTTGATCAGATTGTGGATAAGGATCGTGTTTCGTATAATTCGATTAT 797
Query 780 GAGTGTTTATGCTCAGAATGGGATGTCTAATGAGGCTTTTGATGTTTTTCGTAGAC-TGA 838
|||||| |||||||||| |||||||||||||||||||||||| ||||||||||||| ||
Sbjct 798 GAGTGTGTATGCTCAGAGTGGGATGTCTAATGAGGCTTTTGAGGTTTTTCGTAGACTTG- 856
Query 839 TTAAGGAGAAAGTTGTGACCTTTAACTCCATTACATTGTCTACTGTGTTGTTGGCAGTTT 898
||||| | |||||||||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 857 TTAAGAATAAAGTTGTGACCTTTAACGCCATTACATTGTCTACTGTGTTGTTGGCGGTCT 916
Query 899 CGCATTCGGGTGCTCTCCGTATTGGAAAGTGTATACATGATCAGGTAATAAGGATGGGTC 958
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 CGCATTCAGGTGCTCTGCGTATTGGAAAGTGTATACATGATCAGGTAATAAGGATGGGTC 976
Query 959 TTGAGGATGACGTGATAGTTGGGACATCGATAATTGATATGTATTGCAAATGTGGAAGAG 1018
|||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 977 TTGAGGATGATGTGATAGTGGGGACGTCGATAATTGATATGTATTGCAAATGCGGAAGAG 1036
Query 1019 TGGAGACGGCAAGATTAGCATTTGATCGAATGAAAAACAAGAATGTTAGGTCGTGGACCG 1078
| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TTGAGACGGCGAGAAAAGCATTTGATCGAATGAAAAACAAGAATGTTAGGTCGTGGACCG 1096
Query 1079 CCATGATTGCTGGATATGGAATGCATGGCCATGCGGCTAAAGCGTTAGAGTTATTCCCTG 1138
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1097 CCATGATTGCTGGATATGGAATGCACGGCCACGCGGCTAAAGCGTTAGAGTTATTCCCTG 1156
Query 1139 CTATGATCGATTCAGGGGTTAGACCAAATTACATTACTTTTGTATCGGTGTTAGCTGCTT 1198
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1157 CTATGATCGATTCAGGGGTTCGACCAAATTACATTACTTTTGTATCAGTGTTAGCTGCTT 1216
Query 1199 GCAGTCACGCGGGTCTTCATGAT-GTAGGCTGGCACTGGTTTAACGCGATGAAGGGAAGA 1257
||||||| ||||||||||||| | | |||||||| |||||||||||| |||||||| |||
Sbjct 1217 GCAGTCATGCGGGTCTTCATG-TGGAAGGCTGGCGCTGGTTTAACGCAATGAAGGGGAGA 1275
Query 1258 TTCGGCGTGGAACC-GGGTTTAGAACACTATGGTTGTATGGTTGATCTTCTAGGTCGAGC 1316
|| || |||||||| ||| ||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1276 TTTGGTGTGGAACCAGGG-TTAGAACACTACGGTTGTATGGTTGATCTTCTAGGTAGAGC 1334
Query 1317 TGGGTTTCTTCAGAAAGCTTATGATTTGACTCAGAAAATGAAGATGGAGCCGGACTCTAT 1376
||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||
Sbjct 1335 TGGGTTTCTTCAGAAAGCTTATGATTTGATTCAGAGAATGAAGATGAAGCCGGACTCTAT 1394
Query 1377 CATCTGGAGCTCACTTCTTGCAGCTTGTAGAATTCACAAGAACGTGGAGCTCGCTGAGAT 1436
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1395 CATCTGGAGCTCACTTCTTGCAGCTTGTAGAATTCACAAGAACGTGGAGCTAGCTGAGAT 1454
Query 1437 ATCCGTGGCACGTTTGTTCGAATTGGATC-CTTCGAACTGCGGTTATTACATGCTGCTTT 1495
||||||||| |||||||| |||||||| | ||||||| |||||||| |||||||||||||
Sbjct 1455 ATCCGTGGCGCGTTTGTTTGAATTGGA-CTCTTCGAATTGCGGTTACTACATGCTGCTTT 1513
Query 1496 CGCATATTTACGCTGATGCGGGGCGTTGGAAAGATGTTGAGAGGGTGAGAATGATAATGA 1555
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1514 CGCATATCTACGCTGATGCGGGTCGTTGGAAAGATGTTGAGAGGGTGAGAATGATCATGA 1573
Query 1556 AGAATCGTGGATTGGTGAAACCCCCGGGTTTTAGCCTACTTGAGTTAAATGGTGAGGTTC 1615
||||||| |||||||||||||| || |||||||| ||||| ||||| |||||||||||||
Sbjct 1574 AGAATCGCGGATTGGTGAAACCGCCAGGTTTTAGTCTACTCGAGTTGAATGGTGAGGTTC 1633
Query 1616 ATGTGTTCTTGATAGGAGACGAAGAGCATCCTCAACGCGAGAAGATTTACGAGTTTTTAG 1675
||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1634 ATGTGTTCTTGATCGGAGACGAAGAGCATCCTCAGCGTGAGAAGATTTACGAGTTTTTAG 1693
Query 1676 CAGAACTGAACCGGAAGCTGTTAGAGGCAGGTTACGTATCGAACACGTCATCTGTATGTC 1735
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1694 CAGAACTGAACAGGAAGCTGTTAGAGGCAGGTTACGTATCGAACACGTCATCTGTATGTC 1753
Query 1736 ATGATGTTGATGAGGAAGAGAAAGAGATGACACTGAGAGTTCACAGCGAGAAACTAGCGA 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1754 ATGATGTTGATGAGGAAGAGAAAGAGATGACACTGAGAGTTCACAGCGAGAAACTAGCGA 1813
Query 1796 TTGCGTTTGGGATCATGAACACGGTTCCTGGCTCGACGGTTAACGTGGTTAAGAATCTGA 1855
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1814 TTGCGTTTGGGATCATGAACACGGTTCCTGGCTCGACGGTTAATGTGGTCAAGAATCTGA 1873
Query 1856 GAGTTTGCAGCGATTGTCATAATGTGATCAAGTTGATTTCAAAGATTGTTGATAGAGAGT 1915
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1874 GAGTTTGCAGCGATTGTCACAATGTGATCAAGTTGATTTCAAAGATTGTTGATAGAGAGT 1933
Query 1916 TTGTGGTTAGAGATACGAAGCGGTTTCACCATTTCAAAGATGG-GTCTTGCTCTTGTGGC 1974
|||||||||||||| ||||| |||||||||||||||||||||| | | | || |||||
Sbjct 1934 TTGTGGTTAGAGATGCGAAGAGGTTTCACCATTTCAAAGATGGTGGAT-GTTCCTGTGGA 1992
Query 1975 GATTATTGGTGATTCGATATTA 1996
||||| |||||||| |||||||
Sbjct 1993 GATTACTGGTGATTAGATATTA 2014
> AT4G16835.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:9472763-9474803 FORWARD LENGTH=1971
Length=1971
Score = 89.8 bits (48), Expect = 9e-17
Identities = 116/148 (78%), Gaps = 7/148 (5%)
Strand=Plus/Plus
Query 1843 GTT-AAGAATC-TGAGAGTTTGCAGCGATTGTCATAATGTGATCAAGTTGATTTCAAAGA 1900
||| ||||| | ||||| | || | ||||||||||| | ||||| || || || |||
Sbjct 1827 GTTCAAGAA-CTTGAGAATCTGTGGTGATTGTCATAAAGCAATCAAATTTATCTCGGAGA 1885
Query 1901 TTGTTGATA-GAGAGTTTGTGGTTAGAGATACGA-AGCGGTTTCACCATTTCAAAGATGG 1958
| | || | ||||| | | || ||||| || | | ||||||||||||||||||||||
Sbjct 1886 TAG-AGAAACGAGAGATCATTGTAAGAGACACCACA-AGGTTTCACCATTTCAAAGATGG 1943
Query 1959 GTCTTGCTCTTGTGGCGATTATTGGTGA 1986
||||||||||||||||||||| ||||||
Sbjct 1944 GTCTTGCTCTTGTGGCGATTACTGGTGA 1971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98895073650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5