BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484455
Length=1385
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26790.1 | Symbols: FUS3 | AP2/B3-like transcriptional facto... 2026 0.0
> AT3G26790.1 | Symbols: FUS3 | AP2/B3-like transcriptional factor
family protein | chr3:9853828-9855989 REVERSE LENGTH=1380
Length=1380
Score = 2026 bits (1097), Expect = 0.0
Identities = 1310/1405 (93%), Gaps = 46/1405 (3%)
Strand=Plus/Plus
Query 1 AATCTCTGATTGCCCAGCGTCCATTTTAAGCCTCTGTTTCGATCTGcacaacacacatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATCTCTGATTGCCCAGCGTCCATTTTAAGCCTCTGTTTCGATCTGCACAACACACATAC 60
Query 61 acacaacacaacacaaaccacaG--tctc--tctctatct-tc--tctt-tc--tctctc 110
||||||||||||||||||||||| |||| ||||| ||| || |||| || ||||||
Sbjct 61 ACACAACACAACACAAACCACAGTCTCTCTTTCTCTCTCTATCTATCTTCTCTTTCTCTC 120
Query 111 tctatctctATCACTGAAACCCAAAGAGATCCACCATTTGTTCTTTTTTCCTTCATACAG 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 TCTATCTCTATCACTGAAACCCAAAGAGATCCACCATTTGTTCTTTTTTCCTTCACACAG 180
Query 171 AGAACTGTTTTCTTCCACACTTCCTTTTTACTAGGCAGTGTTAACCAATTGAGAGAGAAA 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGAACTGTTTTCTTCCACACTTCCTTTTTACTAGGCAGTGTTAACCAATTGAGAGAGAAA 240
Query 231 AATGATGGTTGATGAAAATGTGGAAACCAAGGCCTCTACTTTAGTGGCAAGTGTTGATCA 290
|||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 241 AATGATGGTTGATGAAAATGTGGAAACCAAGGCCTCTACTTTAGTGGCAA--G-TG-T-- 294
Query 291 TGATCATCATGGGTTTGGATCCGGGTCGGGTCATGATCATCATGGGTTATCGGCGTCTGT 350
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TG---ATCATGGGTTTGGATCCGGGTCGGGTCATGATCATCATGGGTTATCGGCGTCTGT 351
Query 351 GCCTCTGCTTGGTGTTAACTGGAAGAAGAGAAGGATGCCAAGACAGAGACGATCTTCTTC 410
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 352 GCCTCTTCTTGGTGTTAACTGGAAGAAGAGAAGGATGCCTAGACAGAGACGATCTTCTTC 411
Query 411 TTCCTTTAACCTTCTCTCTTTTCCTCCTCCTATGCCTCCTATTTCCCACGTGCAAACTCC 470
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 412 TTCCTTTAACCTTCTCTCTTTCCCTCCTCCTATGCCTCCTATTTCCCACGTGCCAACTCC 471
Query 471 TCTCCCCGCACGTAAAATTGACCCAACAAAGCTAAGATTCCTCTTCCAAAAGGAACTCAA 530
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 472 TCTCCCCGCACGTAAAATTGACCCAAGAAAGCTAAGATTCCTCTTCCAAAAGGAACTCAA 531
Query 531 GAACAGTGACGTCAGCTCCCTCCGCCGTATGATACTCCCCAAGAAAGCGGCAGAGGCTCA 590
|||||||||||||||||| ||||| |||||||||||||| |||||||| || ||||||||
Sbjct 532 GAACAGTGACGTCAGCTCTCTCCGACGTATGATACTCCCGAAGAAAGCCGCGGAGGCTCA 591
Query 591 CTTGCCGGCACTGGAATGCAAGGAAGGGATTCCAATAAGAATGGAAGATTTGAATGGTCT 650
|||||||||||| |||||||||||||||||||| |||||||||||||||||| | ||| |
Sbjct 592 CTTGCCGGCACTTGAATGCAAGGAAGGGATTCCTATAAGAATGGAAGATTTGGACGGTTT 651
Query 651 TCACGTTTGGACCTTCAAGTATAGGTACTGGCCAAACAACAATAGCAGAATGTACGTGCT 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TCACGTTTGGACCTTCAAGTATAGGTACTGGCCAAACAACAATAGCAGAATGTACGTGCT 711
Query 711 AGAAAACACAGGCGATTTTGTGAACGCTCATGGTCTGCAGCTAGGTGACTTCATCATGGT 770
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 712 AGAAAACACAGGCGATTTTGTGAATGCTCATGGTCTGCAGCTAGGTGACTTCATCATGGT 771
Query 771 TTACCAAGATCTCTACTCAAACAATTACGTTATACAAGCAAGAAAGGCATCAGAAGAAGA 830
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 772 TTACCAAGATCTCTACTCAAACAATTACGTTATACAAGCAAGAAAAGCATCGGAAGAAGA 831
Query 831 AG--G-AGACGTAACCAATGTTGAAGAAGACGACGTTTACACAAACTTAACAAGGATCGA 887
|| | |||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AGAAGTAGACGTAATCAATCTTGAAGAAGACGACGTTTACACAAACTTAACAAGGATCGA 891
Query 888 AAACACGGTCGTTAACGATCTTCTCCTCCAAGATTTTAATCATCacaacaccaacaacaa 947
|||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 892 AAACACTGTGGTTAACGATCTTCTCCTCCAAGATTTTAATCATCACAACAACAACAACAA 951
Query 948 caacaacaacaaca--a-cagcaacaaATGTTCTTACTATTATCCCA-TCATCGACGATG 1003
|||||||| ||||| | ||||||||||||||||||||||||||| | |||| || ||||
Sbjct 952 CAACAACAGCAACAGCAACAGCAACAAATGTTCTTACTATTATCC-AGTCATAGATGATG 1010
Query 1004 TCACTACAACCACTG-GTTCTTTTGTCTACGACACGACGGCT-TTAACCTCCAACGACAC 1061
|||| |||| ||| | || ||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 1011 TCACCACAAACACAGAGT-CTTTTGTCTACGACACGACGGCTCTTA-CCTCCAACGATAC 1068
Query 1062 TCCTCTCGATTTTTTGGGTGGACATACGACGACTACTAATAATTATTATTCCAAGTTTGG 1121
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1069 TCCTCTCGATTTTTTGGGTGGACATACGACGACTACTAATAATTATTACTCCAAGTTCGG 1128
Query 1122 AACATTCGATGGTTTGGGCTCCGTTGAGAATATATCTCTCGATGACTTCTACTAGATGAT 1181
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1129 AACATTCGATGGTTTGGGCTCCGTTGAGAATATCTCTCTCGATGACTTCTACTAGATAAT 1188
Query 1182 CAATCGATGGGCTCATGATGATTGTTAATGGTGATCAACTATTTTATTTCCTTATAATAG 1241
||||||||||||||||| | ||| || |||||||||| |||||| || |||||||||||
Sbjct 1189 CAATCGATGGGCTCATGGT-ATTCTTGATGGTGATCAGCTATTTAATATCCTTATAATA- 1246
Query 1242 ATACCCTATAAGAATTAAGTGCA-TTTGGCATATATATTATCAAGTGTTCAGTATTACAT 1300
|| |||||||||||| |||| |||| |||||||||||||||||||| | ||| ||||
Sbjct 1247 -TA---TATAAGAATTAAATGCAATTTG-CATATATATTATCAAGTGTTGAATATAACAT 1301
Query 1301 TACAGTTTATATGAAAATTATAGCTAGATGGGAGTCATATGAAGGTGTGTTGTGTTGTGT 1360
|||||||||||||||||| ||||||||||| ||||||| ||||||||||||| || ||
Sbjct 1302 TACAGTTTATATGAAAATCATAGCTAGATGTGAGTCAT--GAAGGTGTGTTGTATT-TG- 1357
Query 1361 TTGATGAATAAATGTTATTTAGTGT 1385
||||||||||||||||||||||
Sbjct 1358 ---ATGAATAAATGTTATTTAGTGT 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68222540655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5