BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484456
Length=2352
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26810.1 | Symbols: AFB2 | auxin signaling F-box 2 | chr3:98... 3446 0.0
AT1G12820.1 | Symbols: AFB3 | auxin signaling F-box 3 | chr1:43... 1489 0.0
> AT3G26810.1 | Symbols: AFB2 | auxin signaling F-box 2 | chr3:9867845-9870640
FORWARD LENGTH=2401
Length=2401
Score = 3446 bits (1866), Expect = 0.0
Identities = 2224/2389 (93%), Gaps = 56/2389 (2%)
Strand=Plus/Plus
Query 1 agagagagagagagagTTTTGTTCTTCTTCTTTCTGG-TCTTTTGCTTTGCTTCGGTTAC 59
||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| |
Sbjct 15 AGAGAGAGAGAGAGAGTTTTGTTCTTCTTCTTTCTGGTTCCTTTGCTTTGCTTTGGTTGC 74
Query 60 GTGA--T-CTCTCTCATCAATCTTCTGAAAATCATCATTCTCATCATCATTAGCTTCTTG 116
|||| | |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 75 GTGATCTCCTCTCTCATCAATCTTCT--TCATCATCATTCTCATCATCATTAGCTTCTTG 132
Query 117 A----ttttt--ttcttttttt-GTTTCAAGAAACTAAGCAAAGTTTCTATTTATGGTTT 169
| ||||| |||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 133 ATTTTTTTTTCCTTCTTTTTTTCGTTTCAAGAAACTAAACAAAGTTTCTATTTATGGTTT 192
Query 170 TCTGATT-TTCTTTTACAGATCTATTATTTGATTCT-CTTTGATCATTGTCAACGTTTTC 227
||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 193 TCTGATTCTTCTTCTACAGATCTATTATTTGATTCTCCTTCGATCATTGTCAACGTTTTC 252
Query 228 TTCTTTTGTATTAATCATCACAG---TTCTTGAGAATTTCTTCAtttttttttCT--TAA 282
|||||||| |||||||||||| || |||||||||| ||||||||||||||| ||
Sbjct 253 TTCTTTTG---TAATCATCACAGTTTTTTTTGAGAATTTGTTCATTTTTTTTTCTCATAT 309
Query 283 ACTGATTCGAGTTCCTTCTTCTTCAGTCTTGTTCTTGATAGATCTAGTATTTG-TTTTTA 341
| |||||||||||| |||||||| | |||||||||| ||||||||||| |||| ||||||
Sbjct 310 ATTGATTCGAGTTCTTTCTTCTTGAATCTTGTTCTTCATAGATCTAGTTTTTGTTTTTTA 369
Query 342 CTCTCCAGATCTATAGATCTGTTGAATTCACTTCTTTAAGT-CATCTCTGTGTTCTTGAG 400
||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 370 CTCTCTAGATCTATAGATCTGTTGAATTCACTTCTTTAA-TCCATCTCTGTGTTCTTGAG 428
Query 401 CTCCTATGTTCTAAGTCAAACTCAAGTTCAAGATCTGGTGAA-TT-GAATCTTGCTGCTG 458
||||||| |||||||||||||||||||||||||||| |||| || ||||||||||| ||
Sbjct 429 TTCCTATGGTCTAAGTCAAACTCAAGTTCAAGATCTGTTGAATTTGGAATCTTGCTGGTG 488
Query 459 AAGTTAGAGATGAATTATTTCCCAGATGAAGTAATAGAGCACGTATTCGACTTCGTTACA 518
||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 489 AAGTTAGAGATGAATTATTTCCCAGATGAAGTAATAGAGCATGTATTCGACTTTGTAACA 548
Query 519 TCCCACAAAGACAGGAATGCTATATCTCTTGTATGCAAATCATGGTTCAAGATCGAGAGA 578
|| ||||||||||||||||||||||||||||||||||||||||||| |||||| || |||
Sbjct 549 TCTCACAAAGACAGGAATGCTATATCTCTTGTATGCAAATCATGGTACAAGATTGAAAGA 608
Query 579 TACAGTAGGCAAAAGGTTTTCATTGGAAACTGTTATGCCATTAATCCAGAGAGGTTGCTT 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TACAGTAGGCAAAAGGTTTTCATTGGAAACTGTTATGCCATTAATCCAGAGAGGTTGCTT 668
Query 639 CGGAGATTCCCATGTCTAAAGTCTTTGACTTTGAAAGGAAAACCTCATTTTGCGGATTTC 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CGGAGATTCCCATGTCTAAAGTCTTTGACTTTGAAAGGAAAACCTCATTTTGCGGATTTC 728
Query 699 AATTTGGTTCCTCATGAATGGGGAGGTTTTTTGCTACCTTGGATTGAAGCTTTAGCTAGA 758
|||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct 729 AATTTGGTTCCTCATGAATGGGGAGGTTTTGTGCTACCTTGGATTGAGGCTTTGGCTAGA 788
Query 759 AGTCGTGTAGGACTTGAGGAGCTTAGGTTGAAGAGGATGGTTGTTACTGATGAGAGTCTT 818
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 AGCCGTGTAGGACTTGAAGAGCTTAGGTTGAAGAGGATGGTTGTTACTGATGAGAGTCTT 848
Query 819 GAGCTGCTTTCTCGTTCTTTTGTGAATTTTAAGTCTTTGGTGCTTGTTAGCTGTGAAGGT 878
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 849 GAGCTGCTTTCTCGTTCTTTTGTCAATTTTAAGTCTTTGGTCCTTGTTAGCTGTGAAGGT 908
Query 879 TTTACTACTGATGGTCTTGCCTCTATTGCCGCTAATTGCAGGCATCTTCGAGATCTTGAC 938
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 909 TTTACCACTGATGGTCTTGCCTCTATTGCCGCTAATTGCAGGCATCTTCGGGATCTTGAT 968
Query 939 TTGCAAGAGAATGAAATCGATGATCATAGAGGTCAATGGTTAAGTTGTTTCCCCGACACT 998
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 969 TTGCAAGAGAATGAAATCGATGATCATAGAGGTCAATGGTTAAGTTGTTTCCCAGACACT 1028
Query 999 TGTACGACCCTTGTCACGCTTAACTTTGCGTGTCTTGAAGGAGAAACAAATCTGGTTGCT 1058
|| ||||| ||||||||||| ||||||||||| || ||||||||||| ||||||||||||
Sbjct 1029 TGCACGACTCTTGTCACGCTAAACTTTGCGTGCCTCGAAGGAGAAACTAATCTGGTTGCT 1088
Query 1059 CTAGAGAGGCTTGTTGCTAGGTCTCCAAACCTAAAGAGTCTGAAGCTAAACCGTGCAGTG 1118
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1089 CTAGAGAGGCTTGTTGCTAGGTCTCCAAACCTAAAGAGTCTGAAGCTAAATCGTGCAGTA 1148
Query 1119 CCGCTAGATGCACTGGCAAGGTTAATGGTGTGTGCGCCGCAGATAGTTGATTTAGGAGTA 1178
||| |||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1149 CCGTTAGATGCACTCGCAAGGTTAATGGCGTGTGCGCCGCAGATAGTTGACTTAGGAGTA 1208
Query 1179 GGGTCTTATGAGAATGACCCAGATTCAGAGTCTTACCTGAAACTCAAGGCTG-CTATAAA 1237
|||||||||||||||||||||||||| ||||||||| ||||||||| ||||| | |||||
Sbjct 1209 GGGTCTTATGAGAATGACCCAGATTCCGAGTCTTACTTGAAACTCATGGCTGTC-ATAAA 1267
Query 1238 GAAATGCACCTCGTTAAGGAGTTTGTCGGGTTTTCTAGAAGCTGCGCCTCACTGTCTCTC 1297
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1268 GAAATGCACCTCGTTGAGGAGTTTGTCGGGTTTTCTAGAGGCTGCTCCTCACTGTCTCTC 1327
Query 1298 AGCTTTCCACCCAATATGTCATAACCTTACCTCCTTGAATCTTAGTTATGCAGCTGAGAT 1357
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1328 AGCTTTCCACCCAATATGTCATAACCTCACCTCCTTGAATCTTAGTTACGCAGCTGAGAT 1387
Query 1358 TCATGGCAGCCACCTCATTAAGCTTATTCAGCATTGCAAGAAACTTCAGCGGTTATGGAT 1417
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 TCATGGTAGCCACCTTATTAAGCTTATTCAGCATTGCAAGAAACTTCAGCGGTTATGGAT 1447
Query 1418 ATTGGATAGTATAGGTGACAAAGGGCTTGAAGTTGTAGCTTCTACATGTAAAGAGTTACA 1477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 TTTGGATAGTATAGGTGACAAAGGGCTTGAAGTTGTAGCTTCTACATGTAAAGAGTTACA 1507
Query 1478 AGAGCTTAGAGTTTTTCCATCTGATTTACTTGGTGGAGGCAACACAGCTGTGACCGAAGA 1537
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1508 AGAGCTTAGGGTTTTTCCATCTGATTTACTCGGTGGAGGCAACACAGCTGTGACCGAAGA 1567
Query 1538 AGGTCTAGTTGCCATCTCCGCGGGCTGCCCTAAGCTTCACTCGATACTCTACTTCTGCCA 1597
|||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||
Sbjct 1568 AGGTCTAGTTGCCATCTCGGCAGGCTGCCCTAAGCTCCACTCTATACTCTACTTCTGCCA 1627
Query 1598 GCAGATGACAAACGCAGCTCTCGTAACCGTTGCCAAGAACTGTCCAAATTTCATCCGGTT 1657
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1628 ACAAATGACAAACGCAGCTCTCGTAACCGTTGCCAAGAACTGTCCAAATTTCATCCG-TT 1686
Query 1658 TA-GACTCTGCATCCTGGATCCAACCAAACCCGATCACGTGACATCTCAACCTTTAGACG 1716
| ||||||||||||| || |||| ||||||||||||||| |||||||||||| ||||||
Sbjct 1687 TCCGACTCTGCATCCTCGAGCCAAACAAACCCGATCACGTCACATCTCAACCTCTAGACG 1746
Query 1717 AAGGATTTGGAGCAATCGTCAAAGCCTGCAAGAGCCTGAGACGGCTATCCCTCTCAGGTC 1776
|||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||||
Sbjct 1747 AAGGCTTTGGAGCAATCGTCAAAGCCTGCAAGAGCCTGAGAAGGCTTTCTCTCTCAGGTC 1806
Query 1777 TCCTCACAGACCAAGTCTTCCTCTACATCGGGATGTACGCGAATCAGCTCGAGATGCTCT 1836
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1807 TCCTTACAGACCAAGTCTTCCTCTACATCGGAATGTACGCGAATCAGCTCGAGATGCTCT 1866
Query 1837 CAATAGC-TTTCGCAGGGGATACAGACAAAGGCATGCTTTATGTGTTGAATGGTTGCAAA 1895
| ||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1867 CCATAGCCTTT-GCAGGAGATACAGACAAAGGCATGCTATATGTGTTGAATGGTTGCAAA 1925
Query 1896 AAGATGAA-AAAGCTAGAGATTCGGGATAGTCCGTTTGGCGACACGGCGCTTCTTGCTGA 1954
|||||||| ||| |||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1926 AAGATGAAGAAA-CTAGAGATAAGGGATAGTCCGTTTGGGGACACGGCGCTTCTTGCTGA 1984
Query 1955 TGTGAGCAAGTACAAAACAATGCGATCCCTTTGGATGTCGTCATGTGAAGTCACACTCAG 2014
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1985 TGTGAGCAAGTATGAAACAATGCGATCCCTTTGGATGTCTTCATGTGAAGTCACACTCAG 2044
Query 2015 CGGATGCAAAAGGCTCGCACAGAAAGCGCCATGGCTCAATGTAGAGATCATAAACGAGAA 2074
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2045 TGGATGCAAAAGGCTCGCAGAGAAAGCGCCATGGCTCAATGTAGAGATCATAAACGAGAA 2104
Query 2075 TGATAATAACCGGATGGAGGAAAACGGACACGAAGGAAGACAGAAAGTTGATAAATTGTA 2134
|||||||||||||||||| |||||||||||||| || || |||||||| ||||| |||||
Sbjct 2105 TGATAATAACCGGATGGAAGAAAACGGACACGAGGGGAGGCAGAAAGTGGATAAGTTGTA 2164
Query 2135 TCTCTATCGCACTGTGGTTGGGACAAGAATGGATGCGCCGCCATTTGTGTGGATTCTCTA 2194
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2165 TCTGTACCGGACTGTGGTTGGGACAAGAATGGATGCGCCGCCATTTGTGTGGATTCTCTA 2224
Query 2195 -GTCCTTTTCAGACCAAAATATGATTCTGATAGGT--T-T------AGTGTGTCCTTCCC 2244
||||||||||||||||| | | ||||||| ||| | | |||||||| |||||
Sbjct 2225 AGTCCTTTTCAGACCAAACTG-G-TTCTGATTGGTCGTCTTCCGTTAGTGTGTCTTTCCC 2282
Query 2245 -AAGTTAGGTGTATGtttttttttttttttCTTTAAATTAAGACAAGAACTGATTCTTCT 2303
|| ||||||||| ||||| |||| ||||||||||||||||||||||||||||||
Sbjct 2283 GAA-TTAGGTGTAC-TTTTTGTTTT-----CTTTAAATTAAGACAAGAACTGATTCTTCT 2335
Query 2304 GTGAAAGCCATTCTGTTTTTGTTTTTGACTTTCCTCCGTTGATTTATTG 2352
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2336 GTGAAAGCCATTCTGTTTTTGTTTTTGACTTTCCTCCGTTGATTTATTG 2384
> AT1G12820.1 | Symbols: AFB3 | auxin signaling F-box 3 | chr1:4368760-4371293
REVERSE LENGTH=2229
Length=2229
Score = 1489 bits (806), Expect = 0.0
Identities = 1456/1767 (82%), Gaps = 55/1767 (3%)
Strand=Plus/Plus
Query 466 AGATGAATTATTTCCCAGATGAAGTAATAGAGCACGTATTCGACTTCGTTA-CATCCCAC 524
||||||||||||||||||| || || ||||||||||| || ||||||| || | || |||
Sbjct 375 AGATGAATTATTTCCCAGACGAGGTTATAGAGCACGTGTTTGACTTCG-TAGCTTCTCAC 433
Query 525 AAAGACAGGAA-TGCTATATCTCTTGTATGCAAATCATGGTTCAAGATCGAGAGATACAG 583
||||||||||| | | |||||||| || |||||||||||| |||||||||||| | ||
Sbjct 434 AAAGACAGGAACT-CGATATCTCTGGTCTGCAAATCATGGCACAAGATCGAGAGGTTTAG 492
Query 584 TAGGCAA--AAGGTTTTCATTGGAAACTGTTATGCCATTAATCCAGAGAGGTTGCTTC-G 640
|||| || || || ||||| |||||||| || || ||||| || ||||||||| || |
Sbjct 493 TAGG-AAGGAA-GTGTTCATCGGAAACTGCTACGCGATTAACCCGGAGAGGTTG-ATCAG 549
Query 641 GAGATTCCCATGTCT-AAAGTCTTTGACTTTGAAAGGAAAACCTCATTTTGCGGATTTCA 699
||| || |||||||| ||| || || ||||| ||||| || ||||||||||| || ||||
Sbjct 550 GAGGTTTCCATGTCTCAAA-TCCTTAACTTTAAAAGGGAAGCCTCATTTTGCAGACTTCA 608
Query 700 ATTTGGTTCCTCATGAATGGGGAGGTTTTTTGCTA-CCTTGGATTGAAGCTTTAGCTAGA 758
| |||||||||||||||||||||||||| ||| | ||||||||||||||||| ||||||
Sbjct 609 ACTTGGTTCCTCATGAATGGGGAGGTTTCGTGC-ATCCTTGGATTGAAGCTTTGGCTAGA 667
Query 759 AGTCGTGTAGGACTTGAGGAGCTTAGGTTGAAGAGGATGGTTGTTACTGATGAGAGTCTT 818
|| ||||| |||||||||||||| ||||||||| |||||||||| || ||||| || |||
Sbjct 668 AGCCGTGTGGGACTTGAGGAGCTGAGGTTGAAGCGGATGGTTGTAACAGATGAAAG-CTT 726
Query 819 -GAGCTGCTTTCTCGTTCTTTTGTGAATTTTAAGTCTTTGGTGCTTGTTAGCTGTGAAGG 877
|| || ||||| |||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 727 GGACCTTCTTTCACGTTCTTTTGCAAATTTCAAGTCTTTGGTTCTTGTTAGCTGTGAAGG 786
Query 878 TTTTACTACTGATGGTCTT-GCCTCTATTGCCGCTAATTGCAGGCATCTTCGAGATCTTG 936
||||| |||||||| ||| || || |||||||||||||||||||||||||| || || |
Sbjct 787 GTTTACCACTGATGG-CTTAGCTTCCATTGCCGCTAATTGCAGGCATCTTCGTGAGCTGG 845
Query 937 ACTTGCAAGAGAATGAAATCGATGATCATAGAGGTCAATGG-TTAAGTTGTTTCCCCGAC 995
|||||||||||||||| || ||||||||||||||||||||| | || ||||| || ||
Sbjct 846 ACTTGCAAGAGAATGAGATTGATGATCATAGAGGTCAATGGCTGAA-CTGTTTTCCAGAT 904
Query 996 A-CTTGTACGACCCTTGTCACGCTT-AACTTT-GCGTGTCTTGAAGGAGAAACAAATCTG 1052
| | || || || ||| | || || || ||| || || ||| ||||||| || ||| |
Sbjct 905 AGC-TGCACTACTCTTATGTCG-TTGAA-TTTCGCTTGCCTTAAAGGAGAGACCAATGTT 961
Query 1053 GTTGCTCTAGAGAGGCTTGTTGCTAGGTCTCCAAACCTAAAGAGTC-TGAAGCTAAACCG 1111
| |||| |||| ||||||||||||||||| |||||||| ||||| | ||||| |||||||
Sbjct 962 GCTGCTTTAGAAAGGCTTGTTGCTAGGTCACCAAACCTGAAGAG-CTTGAAGTTAAACCG 1020
Query 1112 TGCAGTGCCGCTAGATGCACTGGCAAGGTTAATG-GTGTGTGCGCCGCAGATAGTTGATT 1170
|||||| ||||| || ||||| |||||||||||| || |||||||||||| |||| || |
Sbjct 1021 TGCAGTACCGCTTGACGCACTCGCAAGGTTAATGAGT-TGTGCGCCGCAGCTAGTGGACT 1079
Query 1171 TAGGAGTAGGGTCTTATGAGAATGACCCAGATTCAGAGTC-TTACCTGAAACTCAAGGCT 1229
||||||||||||||||||||||||| |||||| | || || || | ||||||| | ||
Sbjct 1080 TAGGAGTAGGGTCTTATGAGAATGAGCCAGATCCTGAATCTTTTGC-AAAACTCATGACT 1138
Query 1230 GCTATAAAGAAATGCACCTCGTTAAGGAGTTTGTC-GGGTTTTCTAGAAGCTGCGCCTCA 1288
|| || ||||||| ||| ||||||||||| ||||| || |||| |||| | ||| || |
Sbjct 1139 GCCATTAAGAAATACACATCGTTAAGGAGCTTGTCTGGCTTTT-TAGAGGTTGCTCCACT 1197
Query 1289 CTGTCTCTCAGCTTTCCACCCAATATGTCATAACCTTACCTCCTTGAATCTTAGTTATGC 1348
||| ||| |||| ||| ||||||| || || ||||||| ||| ||||| || || |||||
Sbjct 1198 CTGCCTCCCAGCGTTCTACCCAATTTGCCAAAACCTTATCTCTTTGAACCTCAGCTATGC 1257
Query 1349 AGCTGAGATTCATGGCAGCCACCTCATTAAGCTTATTCAGCATTGCAAGAAACTTCAGCG 1408
|||||| || || |||| ||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 1258 AGCTGAAATCCAAGGCAACCACCTCATTAAGCTTATTCAGCTTTGCAAGAGACTTCAACG 1317
Query 1409 GTTATGGATATTGGATAGTATAGGTGACAAAGGGCTTGAAGTTGTAGCTTCTACATGTAA 1468
|||||||||||||||||||| ||||||||||| |||| ||||| ||| | ||||||||
Sbjct 1318 ATTATGGATATTGGATAGTATTGGTGACAAAGGACTTGCGGTTGTCGCTGCCACATGTAA 1377
Query 1469 AGAGTTACAAGAGCTTAGAGTTTTTCCATCTGATTTACTTGGTGGAG--GC-AACA-C-- 1522
||||||||||||||||||||||||||| |||||| ||| ||||| || | |||| |
Sbjct 1378 AGAGTTACAAGAGCTTAGAGTTTTTCCCTCTGATGTACATGGTGAAGAAGATAACAACGC 1437
Query 1523 AGCTGTGACCGAAGAAGGTCTAGTTGCCATCTCCGCGGGCTGCCCTAAGCTTCACTCGAT 1582
| ||||||| || | || ||||| ||||| ||||| || |||||||| ||||| |||||
Sbjct 1438 ATCTGTGACTGAGGTTGGACTAGTCGCCATTTCCGCAGGTTGCCCTAAACTTCATTCGAT 1497
Query 1583 ACTCTACTTCTGCCAGCAGATGACAAACGCAGCTCTCGTAACCGTTGCCAAGAACTGTCC 1642
|| ||||||||| | ||||||||||||||||| ||| || |||| ||||| ||||||||
Sbjct 1498 TCTGTACTTCTGCAAACAGATGACAAACGCAGCGCTCATAGCCGTGGCCAAAAACTGTCC 1557
Query 1643 AAATTTCATCCGGTTTAGACTCTGCATCCTGGATCCA-ACCAAACCCGATCACGTGACAT 1701
||| ||||||||||| || || ||||| || || ||| || ||||| || ||| | ||||
Sbjct 1558 AAACTTCATCCGGTTCAGGCTATGCATTCTCGAGCCACAC-AAACCTGACCACATTACAT 1616
Query 1702 CTCAACCTTTAGACGAAGGATTTGGAGCAATCGT-CAAAGCCTGCAAGAGCCTGAGACGG 1760
|||| | | ||||| || ||||| |||||||| ||| || |||||| | || ||||||
Sbjct 1617 TTCAATCACTGGACGAGGGCTTTGGTGCAATCGTACAA-GCTTGCAAGGGTCTAAGACGG 1675
Query 1761 CTATCCCTCTCAGGTCTCCTCACAGACCAAGTCTTCCTCTACATCGGGATGTACGCG-AA 1819
|| || |||| |||||| | || || |||||||| ||||||||||| ||||||||| ||
Sbjct 1676 CTCTCTGTCTCCGGTCTCTTAACCGATCAAGTCTTTCTCTACATCGGTATGTACGCGGAA 1735
Query 1820 TCAGCTCGAGATGCTCTCAATAGCTTTCGCAGGGGATACAGACAAAGGCATGCTTTATGT 1879
|||||||||||||| || |||||||| || ||||| || |||||||| ||||| |||||
Sbjct 1736 -CAGCTCGAGATGCTTTCGATAGCTTTTGCGGGGGACACTGACAAAGGAATGCTCTATGT 1794
Query 1880 GTTGAATGGTTGCAAAAAGATGAAAAAGCTAGAGATTCGGGATAGTCCGTTTGGCGACAC 1939
||||||||| |||||||| |||| ||||| ||||| |||| ||||| ||||| || ||
Sbjct 1795 GTTGAATGGATGCAAAAAAATGAGGAAGCTGGAGATAAGGGACAGTCCTTTTGG-GA-AC 1852
Query 1940 G--GCGCTTCTTGCTGATGTGAGCAAGTACAAAACAATGCGATCCCTTTGGATGTCGTCA 1997
| |||||||||||||| ||| | | |||| ||||||||||||||||||||||||||||
Sbjct 1853 GCTGCGCTTCTTGCTGACGTGGGTAGGTACGAAACAATGCGATCCCTTTGGATGTCGTCT 1912
Query 1998 TGTGAAGTCACACTCAGCGGATGCAAAAGGCTCGCACAGAAAGCGCCATGGCTCAATGTA 2057
|||||||| |||||| | || ||||| |||||||| ||||| ||||| |||| || |||
Sbjct 1913 TGTGAAGTAACACTCGGTGGCTGCAAGAGGCTCGCGCAGAATTCGCCACGGCTTAACGTA 1972
Query 2058 GAGATCATAAACGAGAATGATAATAACCGGATGGAGGAAAACGGACACGAAGGAAGACAG 2117
|||||||| ||||||||||| ||||| ||||||| | || | | | || | |||| ||
Sbjct 1973 GAGATCATCAACGAGAATGAGAATAATGGGATGGAACAGAATGAAGAAGATGAAAGAGAG 2032
Query 2118 AAAGTTGATAAA-TTGTATCTCTATCGCACTGTGGTTGGGACAAGAATGGATGCGCCGCC 2176
|| ||||||||| || || ||||| || || ||||||||||| |||| ||||| || ||
Sbjct 2033 AAGGTTGATAAACTT-TACCTCTACCGAACAGTGGTTGGGACTAGAAAAGATGCACCACC 2091
Query 2177 ATTTGTGT-GGATTCTCTAGTC-CTTT 2201
|| ||| | ||||||| ||||| ||||
Sbjct 2092 ATATGT-TAGGATTCTTTAGTCTCTTT 2117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116766467670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5