BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484464

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G26860.2 | Symbols:  | Plant self-incompatibility protein S1...   494    3e-139


> AT3G26860.2 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr3:9901516-9901884 REVERSE LENGTH=369
Length=369

 Score =  494 bits (267),  Expect = 3e-139
 Identities = 323/350 (92%), Gaps = 4/350 (1%)
 Strand=Plus/Plus

Query  1    CTATTTGTGTGTAGCCTTTGCCTGCTTGGCCATGTATCCAGCGCTGGAATCAGGATCGGT  60
            ||| ||||||||||| ||||| | |||||||||||||| ||||||||||||||||| |||
Sbjct  19   CTACTTGTGTGTAGCTTTTGCATACTTGGCCATGTATCTAGCGCTGGAATCAGGATTGGT  78

Query  61   AACGAACTCAAAAACAAAAAGCTCCTCTGGATGAGGTGTTATTCCAAAGATGACGTTATA  120
            |||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||
Sbjct  79   AACGAACTCAAAAACAAAAAACTCTTATGGATGAGATGTTATTCCAAAGATGACGTTATA  138

Query  121  GGTCCAAAAATAATACCAATCGGAGGGCATTCGTTCAATTATTTTGGTACTAAC-T-TTT  178
            ||||||  ||||||||| ||||||||||||  |||||||||||||||||| ||| | |||
Sbjct  139  GGTCCATTAATAATACCGATCGGAGGGCATAGGTTCAATTATTTTGGTACCAACATATTT  198

Query  179  GGAGTACGACTCGTTTCATGTGTACCTTGAGACAAGGGCCTAATTATAGACACCATCAAA  238
             |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  199  -G-CTACGACTCGTTTCATGTGTACCTTGAGACAAGGGCCTAATTATAGACACCATCAAA  256

Query  239  ACTTTACAGCATTTAAACTTTACAGTGCTTCAGATGATGGCGGCGTATGGGATTGGAGAG  298
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  257  ACTTTACAGCATTTAAACTTTACAGTGCTTCAGATGATGGAGGCGTATGGGATTGGAGAG  316

Query  299  CAAGAGAAGATGGAATCTATCTAAAGATAAGACCTGAGAGACATGTTAAT  348
            ||||||||||||| |||||||||||||||| | ||||||||  |||||||
Sbjct  317  CAAGAGAAGATGGGATCTATCTAAAGATAAAAGCTGAGAGAGGTGTTAAT  366



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16286750676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5