BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484465

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G30714.1 | Symbols:  | Pseudogene of AT3G26870; self-incompa...   571    1e-162
  AT3G26870.1 | Symbols:  | Plant self-incompatibility protein S1...   521    1e-147


> AT3G30714.1 | Symbols:  | Pseudogene of AT3G26870; self-incompatibility 
protein-related | chr3:12300955-12301347 REVERSE 
LENGTH=393
Length=393

 Score =  571 bits (309),  Expect = 1e-162
 Identities = 366/394 (93%), Gaps = 2/394 (1%)
 Strand=Plus/Plus

Query  1    ATGAAAAATCTCACAATTTTCATATTTGTTTTTAGCCTTTGCACGCTTGGCCATGTATCC  60
            |||||| || ||||||||||| ||||||||||||| ||||||| ||||||||||||||||
Sbjct  1    ATGAAATATTTCACAATTTTCGTATTTGTTTTTAGTCTTTGCATGCTTGGCCATGTATCC  60

Query  61   GGTGCCGGAATCAGAATCGTAAACGAACTCAAAAGTAGGAAAACTCTCTGGATGAGGTGT  120
            || |||||||| |||||||| ||||||||||||| || ||||||||| ||||||||||| 
Sbjct  61   GGCGCCGGAATTAGAATCGTGAACGAACTCAAAAATAAGAAAACTCTTTGGATGAGGTGC  120

Query  121  TATTCCAAAGATGACGTACTAGGTCCAACGGTAATACCAAATGGAGGACAGTTTACTA-A  179
            ||||||||| |||||||||| |||||||| |||||||||||||||||||| ||||| | |
Sbjct  121  TATTCCAAAAATGACGTACTTGGTCCAACAGTAATACCAAATGGAGGACAATTTAC-AGA  179

Query  180  TTATTTCTTTCATAATTTATTTGGTACGATGCGTTTTATGTGTACTTTAAAACAAGGGCC  239
            |||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||
Sbjct  180  TTATTTCTTTCATAATTTATTTGGTACGACACGTTTTATGTGTACCTTAAAACAAGGGCC  239

Query  240  TGGATTTAGTCACAGTGTGAGTTTTAGAGCATTTAAAAATTCTGGTTTATGGGATTGGAG  299
            ||||||||||||||||  ||| ||||||||||||||||||||||| ||||||||||||||
Sbjct  240  TGGATTTAGTCACAGTCAGAGCTTTAGAGCATTTAAAAATTCTGGCTTATGGGATTGGAG  299

Query  300  AGCCAGAGAAGATGGGATCTATTTAAGAAGAATCTATAAGGCCAAATTTGATGACGGCGC  359
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  300  AGCTAGAGAAGATGGGATCTATTTAAGAAGAATCTATAAGGCCAAATTTGATGACGGTGC  359

Query  360  AGACAATCTGCATAAAGAGCAAAATTGGATATAG  393
            ||||||||||||||||||||||| ||||||||||
Sbjct  360  AGACAATCTGCATAAAGAGCAAAGTTGGATATAG  393


> AT3G26870.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr3:9903288-9903680 REVERSE LENGTH=393
Length=393

 Score =  521 bits (282),  Expect = 1e-147
 Identities = 358/395 (91%), Gaps = 4/395 (1%)
 Strand=Plus/Plus

Query  1    ATGAAAAATCTCACAATTTTC-ATATTTGTTTTTAGCCTTTGCACGCTTGGCCATGTATC  59
            |||||| || |||||||||||  ||||| ||||||| ||||||| | |||||||||||||
Sbjct  1    ATGAAATATTTCACAATTTTCTTTATTT-TTTTTAGTCTTTGCATGTTTGGCCATGTATC  59

Query  60   CGGTGCCGGAATCAGAATCGTAAACGAACTCAAAAGTAGGAAAACTCTCTGGATGAGGTG  119
             || ||||||||||||||||| ||||||||||||| || ||| || || |||||||||||
Sbjct  60   TGGCGCCGGAATCAGAATCGTCAACGAACTCAAAAATAAGAAGACCCTTTGGATGAGGTG  119

Query  120  TTATTCCAAAGATGACGTACTAGGTCCAACGGTAATACCAAATGGAGGACAGTTTACTA-  178
            |||||||||| |||| ||||| ||||||||  ||||||||||||||||||| ||||| | 
Sbjct  120  TTATTCCAAAAATGATGTACTTGGTCCAACAATAATACCAAATGGAGGACAATTTAC-AG  178

Query  179  ATTATTTCTTTCATAATTTATTTGGTACGATGCGTTTTATGTGTACTTTAAAACAAGGGC  238
            |||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct  179  ATTATTTCTTTCATAATTTATTTGGTACAACGCGTTTTATGTGTACCTTAAAACAAGGGC  238

Query  239  CTGGATTTAGTCACAGTGTGAGTTTTAGAGCATTTAAAAATTCTGGTTTATGGGATTGGA  298
            |||||||||||||||||  ||| ||||||||||||||||||||||| |||||||||||||
Sbjct  239  CTGGATTTAGTCACAGTCAGAGCTTTAGAGCATTTAAAAATTCTGGCTTATGGGATTGGA  298

Query  299  GAGCCAGAGAAGATGGGATCTATTTAAGAAGAATCTATAAGGCCAAATTTGATGACGGCG  358
            |||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | | 
Sbjct  299  GAGCTAGAGAAGATGGGATCTATTTAAGAAGAATCTATAAGACCAAATTTGATGATGACA  358

Query  359  CAGACAATCTGCATAAAGAGCAAAATTGGATATAG  393
            |||||||||||||||||||||||| ||||||||||
Sbjct  359  CAGACAATCTGCATAAAGAGCAAAGTTGGATATAG  393



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18548799381


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5