BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484466
Length=377
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26880.1 | Symbols: | Plant self-incompatibility protein S1... 501 2e-141
AT3G26872.1 | Symbols: | Pseudogene of AT3G26880; self-incompa... 381 2e-105
> AT3G26880.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:9906334-9906735 REVERSE LENGTH=402
Length=402
Score = 501 bits (271), Expect = 2e-141
Identities = 343/378 (91%), Gaps = 4/378 (1%)
Strand=Plus/Plus
Query 1 ATGAAAAACGTCTCAATCTTTCTGA-TTGTTTTTGGCCTTTGCATGATTGGTGATGTATA 59
||||||||| ||||||||||||| | ||||| |||| |||||||||||| ||||||||||
Sbjct 1 ATGAAAAACCTCTCAATCTTTCT-ATTTGTTGTTGGGCTTTGCATGATTAGTGATGTATA 59
Query 60 TGGGAAAAAGTCTATGATTACAGTCAAGAATGAATTCAGTCCCAAAAGC-AGGCTAGTCC 118
|| ||||| |||| |||||| |||||||||||||| | |||||||| | || || |||
Sbjct 60 CGGAAAAAAATCTACGATTACGGTCAAGAATGAATTAAATCCCAAAAACAAGAATA-TCC 118
Query 119 TCAAGGTGCATTGTAAATCCAAAAACGACGATATTGGTATAAAATATCTCGAAATTGGAG 178
|||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 119 TCAAGGTGCATTGTAAATCCAAAAACAACGATATTGGTGTAAAATATCTCAAAATTGGAG 178
Query 179 AAATAATGTCATTCAGCTTCAAGACAAACTTTTGGGGAACGACGGAATTTTGGTGCGACA 238
|| | |||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 179 AAGTTATGTCATTCAGCTTCAAGACCAACTTTTGGGGAACGACGGAATTTTGGTGCAACT 238
Query 239 TATATAAAGGACCTGATTATAAGCGTTTTAGAGGTTTTACTGCATATCAAGCGAAAGGTT 298
||||||||||||||||||||||||||| ||||||| |||||||||||||||| | |||||
Sbjct 239 TATATAAAGGACCTGATTATAAGCGTTATAGAGGTATTACTGCATATCAAGCTATAGGTT 298
Query 299 TGTTCGTTAAGGATGGATCATCGTATAATTGGTTAGCTAGAGATGATGGAATCTATTTTC 358
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGTTCGCCAAAGATGGATCATCGTATAATTGGTTAGCTAGAGATGATGGAATCTATTTTC 358
Query 359 ATAAGAATTTGTTGCCTA 376
||||| ||| ||||||||
Sbjct 359 ATAAGGATTCGTTGCCTA 376
> AT3G26872.1 | Symbols: | Pseudogene of AT3G26880; self-incompatibility
protein-related | chr3:9904307-9904684 REVERSE LENGTH=378
Length=378
Score = 381 bits (206), Expect = 2e-105
Identities = 325/381 (85%), Gaps = 13/381 (3%)
Strand=Plus/Plus
Query 1 ATGAAAAA-CGTCTCAATCTTTCTGA-TTGTTTTTGGCCTTTGCATGATTGGTGATGTAT 58
|||||||| | ||||||||||||| | || ||||||| |||||||| |||||||||||||
Sbjct 1 ATGAAAAATC-TCTCAATCTTTCT-ATTTCTTTTTGGGCTTTGCAT-ATTGGTGATGTAT 57
Query 59 ATGGGAAAAAGTCTATGATTACAGTCAAGAATGAATTCAGTCCCAAAAGCAGGCTAGTCC 118
| |||||| |||||| |||| |||| || |||||||||| |||||||| | | ||
Sbjct 58 ACATGAAAAAATCTATGTTTACGGTCATGACCGAATTCAGTCGCAAAAGCAAGAAAATCG 117
Query 119 TCAAGGTGCATTGTA-A-ATCCAAAAACGACGATATTGGTATAAAATATCTCGAAATTGG 176
||||||||||||||| | || |||||| | |||| |||||||||||| || ||| |||
Sbjct 118 TCAAGGTGCATTGTATATATATAAAAAC-A--ATATAGGTATAAAATATATCAAAAATGG 174
Query 177 AGAAA-TAATGTCATTCAGCTTCAAGACAAACTTTTGGGGAACGACGGAATTTTGGTGCG 235
| ||| | |||||||||||||| || || ||| ||||||||||||||| |||||||||||
Sbjct 175 A-AAAGTTATGTCATTCAGCTTTAA-ACCAACGTTTGGGGAACGACGGGATTTTGGTGCG 232
Query 236 ACATATATAAAGGACCTGATTATAAGCGTTTTAGAGGTTTTACTGCATATCAAGCGAAAG 295
|||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||
Sbjct 233 ACATATATAAAGGACCTGATTATAAGAATTTTATAGGTTTTACTACATATCATGCGAAAG 292
Query 296 GTTTGTTCGTTAAGGATGGATCATCGTATAATTGGTTAGCTAGAGATGATGGAATCTATT 355
||||||| ||||||| | ||||||| ||||||| |||||||||||||||| ||||||||
Sbjct 293 GTTTGTTTGTTAAGGGTAGATCATCATATAATTAGTTAGCTAGAGATGATAAAATCTATT 352
Query 356 TTCATAAGAATTTGTTGCCTA 376
||| | || ||||||||||||
Sbjct 353 TTCTTGAGGATTTGTTGCCTA 373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17744515397
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5