BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484472
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26900.1 | Symbols: SKL1, ATSKL1 | shikimate kinase like 1 |... 1445 0.0
> AT3G26900.1 | Symbols: SKL1, ATSKL1 | shikimate kinase like 1
| chr3:9912209-9914514 REVERSE LENGTH=1038
Length=1038
Score = 1445 bits (782), Expect = 0.0
Identities = 904/961 (94%), Gaps = 15/961 (2%)
Strand=Plus/Plus
Query 1 TATGGTAAAAGAAAATT-ATACGTGGCGGATATCTTGGGACTAGAGG-AGGA-GG-GAG- 55
|||| |||||| ||||| ||||||||||||||||||||||||||||| |||| || |||
Sbjct 2 TATGATAAAAG-AAATTAATACGTGGCGGATATCTTGGGACTAGAGGAAGGAGGGAGAGA 60
Query 56 AGGAGC-TAAGAGACCATTCGTCGTCGTCAATGGAGA---TCTCTGCGTCTGCTTCTCTA 111
|||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 AGGAGCTTAAGAGAGCATTCGTCGTCGTCAATGGAGATCTTCTCTGCGTCTGCTTCTCTA 120
Query 112 ACTTTCTCTGGATTCGTTCCTCGTCTTCTTCCCTTGCTCTCTCCTCAAGCTCGAACTACT 171
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTTTAACTGGATTCGTTCCTCGTCTTCTTCCCTTGCTCTCTCCTCAAGCTCGAACTAC- 179
Query 172 TCT-TCCAAGACGTTGCTCTCTTCTTCTTCTTCCATTAGACTCATTTCTTCTCACAGTCG 230
||| | |||| ||||||| ||||||||||| | | |||||||||||||| |||||||||
Sbjct 180 TCTCTGCAAGCCGTTGCTGTCTTCTTCTTC-T--ACTAGACTCATTTCTTGTCACAGTCG 236
Query 231 TATAGCTCCGTCTCAGTCTCTCGCCGATCAATCTGCCTCTACCGGGATCAGTGTTGTTGA 290
|||||||||||||| ||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 237 TATAGCTCCGTCTCGGTCTCTCGCAGATCAATCCGCCTCTACTGGGATCAGTGTTGTTGA 296
Query 291 TTCGGATCCCATAGATGTTGTAAAGAGGAAAGCTATGGACATAGCCCCTGAATTGAAAGG 350
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 297 TTCGGATCCCATTGATGTTGTAAAGAGGAAAGCTATGGACATAGCCCCTGAACTGAAAGG 356
Query 351 AGCTTCGATATTTCTGGTTGGGATTAATAACTCTATTAAAACTAAGACGGGGAAGCTTTT 410
|||||| |||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 357 AGCTTCCATATTTCTGGTTGGAATTAATAACTCTATTAAAACGAACACGGGGAAGCTTTT 416
Query 411 GGCTGAGGCATTAAGATATTACTACTTTGATAGTGATAATTTGATCACAGAGGCGGCTGG 470
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GGCTGAGGCATTACGATATTACTACTTTGATAGTGATAATTTGATCACAGAGGCGGCTGG 476
Query 471 TGGAAATATGTCTGCTCAAGCTTTGAAGGAAGCTGATGAGAAGGCTTTTCAGGAATCAGA 530
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 477 TGGAAATGTGTCTGCTCAAGCTTTGAAGGAAGCTGATGAGAAGGCTTTTCAAGAATCAGA 536
Query 531 GACTGAAGTGCTGAAGCAGCTATCATCTATGGGTCGGCTTGTAGTTTGCGCTGGAGATGG 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GACTGAAGTGCTGAAGCAGCTATCATCTATGGGTCGGCTTGTAGTTTGCGCTGGAGATGG 596
Query 591 TGCGGTCCAGAGCTTGACAAATCTTGCACTTCTAAGACACGGAATCTCCATATGGATCGA 650
||||||||| ||||||| ||||||||||||||| |||||||| |||||||||||||||||
Sbjct 597 TGCGGTCCAAAGCTTGAGAAATCTTGCACTTCTTAGACACGGGATCTCCATATGGATCGA 656
Query 651 TGTTCCTCTGGATATCGCAGCTAAAGGGGATGATGATTCATTCAACTCAGAACCTTCTCC 710
|||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| ||
Sbjct 657 TGTTCCTCTGGATATCACTGCTAAAGGGGATGATGATTCATTCCACTCAGAACCTTCCCC 716
Query 711 TGAGTTGTTTGTCACACTAAAAGCGAGTTACGAAAAATCAAGAAAGGGTTACGAAACAGC 770
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 717 TGAGTTGTTTGACACACTAAAAGCGAGTTACGAGAAATCAAGAAAGGGTTACGAAACAGC 776
Query 771 AGATGCATCCATTTCCCTTGAAAAAATAGCCACAAAACTGGAATTTGAAGAGTTGGAAGC 830
||||| |||||||||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct 777 AGATGTATCCATTTCCCTTGAAAAAATAGCTACAAAGCTAGAATTTGAAGACTTGGAAGC 836
Query 831 AGTAACTTCTGAAGACATTGCTTTGGAGGTCCTGAAAGAAATCGAGAAGTTGACGAGAGT 890
|||||||||||||||||||||||||||| | ||||||||||| ||||||||||| |||||
Sbjct 837 AGTAACTTCTGAAGACATTGCTTTGGAGATTCTGAAAGAAATAGAGAAGTTGACAAGAGT 896
Query 891 GAAGAAAATGATGGAAGAAGCTTCTCGACCTTTCTAGGTCGATTTTACACTCTCACTCAT 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 897 GAAGAAAATGATGGAAGAAGCTTCTCGACCTTTCTAGGTCGATTTTACACTCTCATTCAT 956
Query 951 A 951
|
Sbjct 957 A 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5