BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484476 Length=2248 Score E Sequences producing significant alignments: (Bits) Value AT3G26910.2 | Symbols: | hydroxyproline-rich glycoprotein fami... 3469 0.0 AT5G41100.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 547 1e-154 > AT3G26910.2 | Symbols: | hydroxyproline-rich glycoprotein family protein | chr3:9915128-9918743 REVERSE LENGTH=2253 Length=2253 Score = 3469 bits (1878), Expect = 0.0 Identities = 2146/2270 (95%), Gaps = 39/2270 (2%) Strand=Plus/Plus Query 1 AAAGAAACtttttttttttGGTCTTCCTTATTCTTTCTTCAATGTCGTTGAACATATCTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAGAAACTTTTTTTTTTTGGTCTTCCTTATTCTTTCTTCAATGTCGTTGAACATATCTG 60 Query 61 ACGATACTTGAATCTCA------C-TCT-TTC--TTCTCTG-ATTTAGTCTCAATTTCAT 109 ||||||||||||||||| | ||| ||| ||||||| ||||||| ||||||||| Sbjct 61 ACGATACTTGAATCTCACTCTTTCTTCTCTTCTATTCTCTGTTTTTAGTCACAATTTCAT 120 Query 110 CT-TATCTCTTCTCACTTTTG-TTCTGAGAAATTTCGATCCCAAGCTTTTTCTCAGAGAA 167 || |||||| ||||||||||| || |||||| |||||||||||||| ||||||||||||| Sbjct 121 CTATATCTCCTCTCACTTTTGTTTTTGAGAATTTTCGATCCCAAGC-TTTTCTCAGAGAA 179 Query 168 TTTTGACTGGAAAATTTCGTAATTAGGGTTTTTGAGATTTGA--CATTATTCTACGATGA 225 |||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 180 TTTTGACTGG-AAATTTCGTAATTAGGGTTTTT--GATTTGAGGCATTATTCTACGATGA 236 Query 226 AAGCTTCGATTGAGAAGTTAAGGAGATTAACATCGCATTCACATAAGGTTGATGTGAAGG 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 AAGCTTCGATTGAGAAGTTAAGGAGATTAACATCGCATTCACATAAGGTTGATGTGAAGG 296 Query 286 AGAAAGGAGAGGTCATGGCTACAACACAAATTGACGAACTCGATCGAGCCGGGAAGGATA 345 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 297 AGAAAGGAGATGTCATGGCTACAACACAAATCGACGAACTCGATCGAGCCGGGAAGGATA 356 Query 346 TGCAAGATATGAGAGACTGCTACGATAGACTACTCTCCGCAGCTGCTGCCACGGCTAATA 405 |||||||||||||||| || ||||||||||||||| | ||||||||||||||||| |||| Sbjct 357 TGCAAGATATGAGAGAATGTTACGATAGACTACTCGCTGCAGCTGCTGCCACGGCAAATA 416 Query 406 GCGCTTATGAGTTCTCTGAGTCTTTGGGAGAAATGGGTTCTTGTTTGGAGCAAATCGCGC 465 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 417 GCGCATATGAGTTCTCTGAGTCGTTGGGAGAAATGGGTTCTTGTTTGGAGCAAATCGCGC 476 Query 466 CTCATAACGACGAAGAAAGCAGTAGAATCTTGTTTATGTTGGGTAAAGTTCAGAGTGAGC 525 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 477 CTCATAACGACGAAGAGAGCAGTAGAATCTTGTTTATGTTGGGTAAAGTACAGAGTGAGC 536 Query 526 TTCAAAGACTTCTTGACACATATCGTAGTCATATATTCAAAACCATTACATCCCCATCAG 585 |||||||||||||||||||||||||||||||||||||| |||| ||||||||||| || | Sbjct 537 TTCAAAGACTTCTTGACACATATCGTAGTCATATATTCGAAACTATTACATCCCCGTCCG 596 Query 586 AGGCGCTTCTCAAGGACCTCAGA-ACTGTTGAGGATATGAAGCAACAATGCGACGAGAAG 644 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||| Sbjct 597 AGGCGCTTCTCAAGGACCTCAGATA-TGTTGAGGATATGAAGCAACAATGCGACGGGAAG 655 Query 645 AGGAATGTGTATGAGATGTCGCTAGTAAAAGATAAAGGAAGGCTTAAAAGCAGTAAAGGA 704 |||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct 656 AGGAATGTGTATGAGATGTCGCTAGTGAAAGAGAAAGGAAGGCCTAAAAGCAGTAAAGGA 715 Query 705 GAGAGGCATATTCCTCCCGAGTCTCGACCTGCTTACAGTGAGTTTCATGACGAAGCAACA 764 ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| Sbjct 716 GAGAGACATATTCCTCCTGAGTCTCGACCTGCTTACAGTGAGTTTCATGATGAAGCCACA 775 Query 765 ATGTGCATTTTTCGATTGAAATCTCTTAAAGAAGGACAAGCTCGTAGTCTCCTTACACAA 824 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| Sbjct 776 ATGTGCATTTTTCGATTGAAATCGCTTAAAGAAGGACAAGCTCGTAGTCTCCTAATACAA 835 Query 825 GCAGTCCGTCACCACACTGCTCAGATGCGTTTGTTCCACACTGGACTGAAATCTCTCGAG 884 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 836 GCAGTCCGTCACCACACTGCTCAGATGCGTTTGTTTCACACTGGACTGAAATCGCTCGAG 895 Query 885 GCAGTTGAGCGTCATGTAAAAGTTGCTGCAGAGAAACAACACATTGACTGTGATCTATCT 944 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 896 GCAGTTGAGCGTCATGTAAAAGTTGCTGTAGAGAAACAACACATTGACTGTGATCTATCT 955 Query 945 GTTCATGGGAACGAGGTGGAAGCTAGCGAGTatgatgatgatgatgatAGCCGATATATG 1004 ||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| ||| Sbjct 956 GTTCATGGGAACGAGATGGAAGCTAGCGAG---GATGATGATGATGATGGCCGATACATG 1012 Query 1005 AACAGAGAAGGAGAACTCAGTTTTGATTACAGAACAAATGACCAGAATGTAGAAGCTGCT 1064 || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || Sbjct 1013 AATAGAGAAGGAGAACTCAGTTTTGATTACAGAACAAATGAGCAGAAGGTAGAAGCTTCT 1072 Query 1065 TCTCTCTCTACACCATGGGGCTCAAAGATGGATGATACAGACCTCTCGTTTCCTCGCCCT 1124 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 1073 TCTCTCTCTACACCATGGGCCACAAAGATGGATGATACAGACCTCTCGTTTCCTCGCCCT 1132 Query 1125 TCTACAACACGACCAGCAGCGGTAAATGCTGATCATAGAGAAGAATATCCAGTTTCAACC 1184 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1133 TCTACAACAAGACCAGCAGCGGTAAATGCTGATCATAGAGAAGAATATCCAGTTTCAACC 1192 Query 1185 CGCGATAAGTATTTGAGCAGCCATTCAGCTCCGTTGTTCCCAGAAAAGAAACCTGATTTA 1244 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1193 CGCGATAAGTATTTGAGCAGCCATTCAGCTCCGTTGTTCCCAGAAAAGAAACCTGATGTA 1252 Query 1245 TCAGAGAGGTTGAGACAGGTGGTGAATCCATCTTTTAATGCCTACGTATTACCAACACCA 1304 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1253 TCAGAGAGGTTGAGACAGGCG---AATCCATCTTTTAATGCCTACGTATTACCAACACCA 1309 Query 1305 AACGATTCAAGGTACTCGAAACCGGTTTCCCAAGCTTTAAATCCGAGGCCAGCAAACCAC 1364 || |||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| Sbjct 1310 AATGATTCAAGGTACTCAAAACCGGTTTCCCAAGCATTAAATCCGAGGCCAACAAACCAC 1369 Query 1365 AGTGCTGGAAACATATGGCATTCATCTCCGTTAGAGCCGATAAAAAGCGGGAAAGATGGG 1424 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1370 AGTGCCGGAAACATATGGCATTCATCTCCGTTAGAGCCGATAAAAAGCGGGAAAGATGGG 1429 Query 1425 AAAGACGCGGAAAACAACAGCTTCTACGGCCGCCTCCCTCGGCCTTCTACAACAGACACG 1484 |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1430 AAAGACGCCGAAAGCAACAGCTTCTACGGCCGCCTCCCTCGGCCTTCTACAACAGACACG 1489 Query 1485 CATCATCATCATCAGCAGCAAGCAGCAGGAAGACATGCATTTTCCGGACCTCTCAAACCG 1544 ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 1490 CATCATCATCA---GCAGCAAGCAGCAGGAAGACATGCATTTTCTGGACCTCTCAGACCG 1546 Query 1545 TCCTCAACAAAACCTGTCACCACGGCGGACAGTTACTCAGGCGCGTTTTGTCCTCTGCCG 1604 |||||||||||||| |||||| ||| |||||||| |||||||| ||||||||||||||| Sbjct 1547 TCCTCAACAAAACCCATCACCATGGCTGACAGTTATTCAGGCGCTTTTTGTCCTCTGCCG 1606 Query 1605 ACTCCTCCAATACTCC---CTCATCCC-CATTCATCAGCTTCTCCAAGAGTCTCCCCTAC 1660 ||||||||| |||||| |||| ||| ||||||||| |||||||||||||||||||||| Sbjct 1607 ACTCCTCCAGTACTCCAATCTCA-CCCTCATTCATCATCTTCTCCAAGAGTCTCCCCTAC 1665 Query 1661 AGCTTCACCTCCTCCTGCTTCTTCCCCGAGACTCAACGAGCTTCACGAGCTTCCAAGACC 1720 |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 1666 CGCTTCACCTCCTCCTGCTTCTTCCCCAAGGCTCAACGAGCTTCACGAGCTTCCAAGACC 1725 Query 1721 CCCAGGCCACTTTGCACCACCGCCAAGACGAGCCAAGTCCCCTGGTCTGGTTGGTCACTC 1780 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1726 CCCAGGCCACTTTGCACCACCTCCAAGACGAGCCAAGTCCCCTGGTCTGGTTGGTCACTC 1785 Query 1781 AGCGCCTCTAACTGGATGGAACCAAGAAAGAAACACTGTCACTGTTGCTCCTCCGTCTGC 1840 |||||||||||| | ||||||||||||||||| |||||||||||||||| |||||| || Sbjct 1786 AGCGCCTCTAACCGCATGGAACCAAGAAAGAAGCACTGTCACTGTTGCTGTTCCGTCCGC 1845 Query 1841 CACCAACATTGTGGCTTCACCACTTCCGGTTCCTCCGTTGGTTGTCCCTAGAAGCTACTC 1900 ||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| Sbjct 1846 CACCAACATTGTGGCCTCGCCGCTTCCGGTTCCTCCGTTGGTTGTCCCTAGAAGCTACTC 1905 Query 1901 TATACCTTCAAGAAACCAGAGAGCTGTTTCTCAACGGCCGGTCGAAAGGAGAGATGATAT 1960 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 1906 TATACCTTCAAGAAACCAGAGAGTTGTTTCTCAACGGCTGGTCGAAAGGAGAGATGATAT 1965 Query 1961 AGTAGCATCCCCACCGTTAACACCAATGAGCCTGTCTCGGCCTCTTCCTCAAGCCACAGG 2020 ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 1966 AGTAGCATCCCCACCGTTAACACCAATGAGCCTGTCTAGGCCACTTCCTCAAGCCACAGG 2025 Query 2021 AGTTGCTCAGACCAGTCAAATCAGAGGAGTAGGAAAGCTGATCGAACGATGAGGCTGCCG 2080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2026 AGTTGCTCAGACCAGTCAAATCAGAGGAGTAGGAAAGCTGATCGAACGATGAGGCTTCCG 2085 Query 2081 CGTCTGCGTCGCGTTTGACCAAAACGCTTG-TTGTACAAATTCAGAGATCTTCACAAGTG 2139 |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 2086 CGTCTGCGTCACGTTTGACCAAAACGCT-GATTGTACAAATTCAGAGATCTTCACAAGTG 2144 Query 2140 AATATAGAAGTCGGTATATGTATTATTCTTTAGTTGGTTAATCTC-TTTTTTCTTTTCCC 2198 |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 2145 AATATAGAAGTCAGTATATGTATTATTCTTTAGTTGGTTAATCTCCTTTTTT-TTTTCCC 2203 Query 2199 ATTGTAAATCTGAAGTCTCTGCTCTTTATTCCATTTTCATTTTCAATCCC 2248 ||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 2204 ATTGTAAATCTGAAGCCTCTGCTCTTTATTCCCTTTTCATTTTCAATCCC 2253 > AT5G41100.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G26910.2); Has 1503 Blast hits to 1197 proteins in 220 species: Archae - 4; Bacteria - 108; Metazoa - 481; Fungi - 318; Plants - 186; Viruses - 39; Other Eukaryotes - 367 (source: NCBI BLink). | chr5:16447222-16450881 FORWARD LENGTH=2239 Length=2239 Score = 547 bits (296), Expect = 1e-154 Identities = 937/1233 (76%), Gaps = 98/1233 (8%) Strand=Plus/Plus Query 221 GATGAAAGCTTCGATTGAGAA-GTTAAGGAGATTAACATCGCATTCACATAAGGTTGATG 279 ||||||||||||| ||| ||| |||||| ||| | ||||||| || || | |||| Sbjct 210 GATGAAAGCTTCGTTTG-GAAGGTTAAGAAGA-T----TCGCATT-ACCCAAAGCCGATG 262 Query 280 TGAAGGAGAAAGGAGAGGTCATGGCTACAACACAAATTGACGAACTCGATCGAGCCGGGA 339 || || | ||||||| | | | || |||||||||| | || | |||||||| | Sbjct 263 CGATTGATATAGGAGAGCTTTTTCCCACTGCACAAATTGAAGGTCTTGCTCGAGCCGCCA 322 Query 340 AGGATATGCAAGATATGAGAGACTGCTACGATAGACTACTCTCCGCAGCTGCTGCCACGG 399 |||||||||||||||||||||| | || |||||| ||||| | ||||||||| | || Sbjct 323 AGGATATGCAAGATATGAGAGAGGGTTATGATAGATTACTCGAAGTAGCTGCTGCTATGG 382 Query 400 CTAATAGCGCTTATGAGTTCTCTGAGTCTTTGGGAGAAATGGGTTCTTGTTTGGAGCAAA 459 |||||||||| |||||||||||||| || ||||| |||||||| || || |||||||||| Sbjct 383 CTAATAGCGCATATGAGTTCTCTGAATCATTGGGGGAAATGGGCTCATGCTTGGAGCAAA 442 Query 460 TCGCGCCTCATAACGA-CGAAGAAAGCAGTAGAA-TCTTGTTTATGTTGGGTAAAGTTCA 517 ||||||||||||| || | ||||||| || ||| |||| | ||||| ||||||||||| Sbjct 443 TCGCGCCTCATAATGATC-AAGAAAGTGGTGGAATTCTT-CTAATGTTAGGTAAAGTTCA 500 Query 518 GAGTGAGCTTCAA-AGACTTC-TTGACACATATCGTAGTCATATATTCAAAACCATTACA 575 | ||||||| || | || || | ||||| |||||| ||| |||||||| ||||||||| Sbjct 501 GTTTGAGCTT-AAGAAAC-TCGTCGACACTTATCGTTCTCAAATATTCAAGACCATTACA 558 Query 576 TC-CCCATCAGAGGCGCTTCTCAAG-GACCTCAGAACTGTTGAGGATATGAAGCAACAAT 633 | || |||||| | |||||| || ||||| |||||||||||||||||||||||||||| Sbjct 559 -CGACCTTCAGAGTCACTTCTC-AGTGACCTTAGAACTGTTGAGGATATGAAGCAACAAT 616 Query 634 GCGACGAGAAGAG-GAATGT-GT-ATG-AGATG-TC--G---C-TAGTAAAAGATAAAGG 682 | || || ||||| || || || | | | ||| | | | | || ||||| || || Sbjct 617 GTGAAGAAAAGAGAGAC-GTTGTTAAGCACATGCTAATGGAGCAT-GTGAAAGACAA-GG 673 Query 683 -A-AGGCTTAAAAGCAGTAAAGGAGAGAGGCATATTCCTCC--CGAGTCTCGAC-CTGCT 737 | | | ||||| ||| |||||| ||||| | ||||| || | || || || ||||| Sbjct 674 TACAAG-TTAAAGGCACTAAAGGGGAGAGACTTATTCG-CCGTC-AG-CTAGAGACTGCT 729 Query 738 TAC-AGTGAGTTTCATGACGAAGCAACAATGTGCATTTTTCGATTGAAATCTCTTAAAGA 796 | | |||| | || || || || || |||||||||| |||||||||||||| || || Sbjct 730 CGCGA-TGAGCTACAAGATGAGGCGACTCTGTGCATTTTCCGATTGAAATCTCTCAAGGA 788 Query 797 AGGACAAGCTCGTAGTCTCCTTACACAAGCAGTCCGTCACCACACTGCTCAGATGCGTTT 856 ||| |||||||| |||||||| |||||||||| ||| ||||||||||||||||||| | | Sbjct 789 AGGGCAAGCTCGAAGTCTCCTCACACAAGCAGCCCGCCACCACACTGCTCAGATGCATAT 848 Query 857 GTTCCACACTGGACTGAAATCTCTCGAGGCAGTTGAGCGTCATGTAA-AAGTTGCTGCAG 915 |||| |||| |||||||| || |||||||| |||| || || | || ||||||||| Sbjct 849 GTTCTTTGCTGGTCTGAAATCGCTTGAGGCAGTAGAGCAACACGTCAGAA-TTGCTGCAG 907 Query 916 AGAAACAACACATTGACTGTGAT-CTATCTGTTCATGGGAACGAGGTGGAA-GCTAGCGA 973 | | ||||||||| ||||||| | || |||| || |||||||| |||| | ||| || Sbjct 908 ATAGACAACACATCGACTGTG-TGCTCTCTGATCCCGGGAACGAAATGGATTG-TAGTGA 965 Query 974 GTatgatgatgatgatgatAGCCGA-TATATGAACAGAGAAGGAGAACTCAGTTTTGATT 1032 | || ||||||||||||| |||| | | | || ||||| ||||||||||||||||| | Sbjct 966 GGATAATGATGATGATGA---CCGACT-TGTTAATAGAGATGGAGAACTCAGTTTTGACT 1021 Query 1033 ACAGAACAAATGACCAGA-ATGTAGAAGCTGCTTCTCTCTCTACACC--ATGGGGC--TC 1087 ||| ||||| ||| |||| | ||||||| | | | ||| ||||| |||| | | Sbjct 1022 ACATAACAAGTGAGCAGAGA-GTAGAAG-T--TA-TATCT--ACACCTCATGGATCGATG 1074 Query 1088 AAAGATGGATGATACAGACCTCTCGTTTCCTCGCCCTTCTACAA-CACGACCAGCAGCGG 1146 || ||||||||| ||||| |||||||||| |||||||| || || || ||||| | | Sbjct 1075 AA-GATGGATGACACAGATCTCTCGTTTCAACGCCCTTC-ACCTGCAGGATCAGCAACAG 1132 Query 1147 TAAATGCTGATCATAGAGAAGAATA-TCCAGTTTCAACCCGCGATA--AGTATTTGAGCA 1203 ||||||| || | ||||||||| | || |||||||| ||| ||| || | ||||| Sbjct 1133 TAAATGCAGACCCTAGAGAAGAGCACTC-AGTTTCAAACCGTGATCGCAGAAC--GAGCA 1189 Query 1204 GCCATTCAGCTCCGT-TGTTCCCAGAAAAGAAACCTGATTTATCAGAGAGGTTGA-GACA 1261 |||||||||| || | |||| || || |||||| |||||||| |||| || | || || Sbjct 1190 GCCATTCAGCACC-TCTGTTTCCGGATAAGAAAGCTGATTTAGCAGATAGATCGATGA-- 1246 Query 1262 GGTGG-TGAATCCATCTTTTAATGCCTACGTATTACCAACACCAAACGATTCAAGGTACT 1320 || | ||| ||||||| ||||| ||| |||||||||| || ||| |||| || || Sbjct 1247 GGCAGATGACTCCATCTGCAAATGCTTACATATTACCAACTCCCGTCGACTCAAAGTCCT 1306 Query 1321 CGAAACCGGT-TTCCCAAG-CTT-TAAATCCGAGGCCAGCAAACCACAGTGCTGGAAACA 1377 | | || | ||| ||| | | | | || || | ||||||||||||| |||| Sbjct 1307 C-A--CCAATCTTCACAAAACCTGTCAC-CC-AG---A-CAAACCACAGTGC---AAACT 1354 Query 1378 TATGGCATTCATCTCCGTTAGAGCCGATAAAAA 1410 |||||||||||||||| |||| || ||||||| Sbjct 1355 TATGGCATTCATCTCCACTAGAACCAATAAAAA 1387 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 111545610990 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5