BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484478

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G26934.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   789    0.0  


> AT3G26934.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 11 Blast hits 
to 11 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa 
- 3; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes 
- 5 (source: NCBI BLink). | chr3:9928157-9929123 REVERSE 
LENGTH=621
Length=621

 Score =  789 bits (427),  Expect = 0.0
 Identities = 554/613 (90%), Gaps = 17/613 (3%)
 Strand=Plus/Plus

Query  1    ATGGGTTGTGGTGTTTCAAGGCCGGAGACAGATGAAGAAGGACAAGAAGAAGGATATGGG  60
            |||||||||||||||||||||||||||||||||   ||||||| | ||||||||| | ||
Sbjct  1    ATGGGTTGTGGTGTTTCAAGGCCGGAGACAGAT---GAAGGACGACAAGAAGGATCTCGG  57

Query  61   CGAGGATCTATCGGTAAAGATAGTGAAACTGCCGATAGTTTCATATCCAATAAAGAGCTT  120
            | ||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||
Sbjct  58   CTAGGATCTATCGGTAAAGATAGCGAAACTGCTGATAGTTTCATATCCGATAAAGAGATT  117

Query  121  CTTGAGATATCTACAC-ATAGT-AAAGATTCCAAAACTAGTGGCG-AAA-A-GAC--G-A  172
            |||||||||||||| | ||||| |||| ||||||||| | ||| | ||| |  ||  | |
Sbjct  118  CTTGAGATATCTAC-CGATAGTAAAAG-TTCCAAAACCAATGGTGAAAATACAACGAGTA  175

Query  173  GTAAAGAGGAGGAAAATGAATGGAAAGAAGATGAAGAACAGAAAGGAGATGAGCTAAAA-  231
            |||||||||||||||||||||||||||| |||| | || |||||||||| ||||||||| 
Sbjct  176  GTAAAGAGGAGGAAAATGAATGGAAAGATGATGGACAAGAGAAAGGAGACGAGCTAAAAC  235

Query  232  ATTTCACCTGAATCTCCGAGTTTTCGAATTTATTGCGTTTTCCCTAGAGATCCTAATGAT  291
            | ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct  236  A-TTCACCTGAATCTCCGAGTTTTCGAATTTATTGTGTTTTCCCTAGAAATCCTAATGAT  294

Query  292  GACCTCGTTGATGATTTGCAACGGAGCAAGAACATATTggaagaaaacaaggagcaaaaa  351
            ||| ||||||||||||||||||||| |||||||||||  || |||||||||||||| |||
Sbjct  295  GACATCGTTGATGATTTGCAACGGAACAAGAACATATCAGACGAAAACAAGGAGCAGAAA  354

Query  352  ggaaagagacaagaagcagtaggaatgaaaataagaagaagaTTTAACAATGTCAAGAAG  411
            | |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  355  GTAAAGAGGCAAGAAGCAGTAGGATTGAAAATAAGAAGAAGATTTAACAATGTCAAGAAG  414

Query  412  CTTCTAAGCCCTCCAACTGTACCTTCCTCCACAGCTAATCGCGGTTGATTTAATTGGTTT  471
            |||||||||||||| ||||||||||||||||||||||| |||  ||||||| ||||||||
Sbjct  415  CTTCTAAGCCCTCCGACTGTACCTTCCTCCACAGCTAACCGCATTTGATTTTATTGGTTT  474

Query  472  TTAAATTCTTCATATTAAAGTAATTGAGGTTTAGAGTGAAACTTTGGGGAAATTCATATG  531
            ||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct  475  TTAAATTCTTCATATTAAACTAATTGAGGTTTAGAGTGAAACTGTGGGGAAACTCATATG  534

Query  532  ATGTGTTAGTGGCCAGAAGCATTT-GACTACTTCTCTATTTTT-ACCATTCTTAGATTCT  589
            ||||||||||||| |||||| ||| |||||||||||||||||| |||||||||||| || 
Sbjct  535  ATGTGTTAGTGGCAAGAAGCTTTTTGACTACTTCTCTATTTTTTACCATTCTTAGACTCC  594

Query  590  TACTCATCCAAAT  602
            ||||| |||||||
Sbjct  595  TACTCCTCCAAAT  607



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28985102819


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5