BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484479
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:99... 2338 0.0
AT5G41070.1 | Symbols: DRB5 | dsRNA-binding protein 5 | chr5:16... 628 3e-179
> AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:9930270-9932074
REVERSE LENGTH=1503
Length=1503
Score = 2338 bits (1266), Expect = 0.0
Identities = 1418/1490 (95%), Gaps = 16/1490 (1%)
Strand=Plus/Plus
Query 1 AAATTCACTTTCAACATCAGAGAGCCCTAA--TCTTTTTGTTACTCATTACACCAAAAAC 58
|||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 16 AAATTCACTTTCAACATCAGAGAGCCCTAAGCTTTTTTTTTTACTCATTACACCAAAAAC 75
Query 59 CTTCAATGGCAACTTTAACAAAGTGAGTTTCTTGTATTTTTGCTACTTCTCTCTCTTTCT 118
|||||| ||||| |||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 76 CTTCAACGGCAA-TTTAACCAAGTGAGTTTCTTGTAGTTTTGCTACTTCTCTCTCTTTCT 134
Query 119 TGAACACTGTAGAGTCTTAAGGTCC--ATCACATGATAGAGACAAGCTCTTCTGTTTATT 176
||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||
Sbjct 135 TGAACACTGTAGAGTCTTAAGGTCCATATCACATGATGGAGACAAGCTCCTCTGTTTATA 194
Query 177 TATAAAGAGACACCAAATCTTAAATACCAATTTAAGCAGATGTATAAGAATCAGTTGCAA 236
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 TATTAAGAGACACCAAATCTTAAATACCAATTTAAGCAGATGTATAAGAATCAGTTGCAA 254
Query 237 GAGCTTGCACAGAGAAGTTGTTTCAATCTCCCATCATATACATGCACAAGAGAAGGACCA 296
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 255 GAGCTTGCACAGAGGAGTTGTTTCAGTCTCCCATCATATACATGCACAAGAGAAGGACCA 314
Query 297 GATCATGCTCCAAGATTCAAAGCTAGTGTAAACTTTAATGGTGAAATATTTGAAAGCCCA 356
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 315 GATCATGCTCCAAGATTCAAAGCTAGTGTAAACTTCAATGGTGAGATATTTGAAAGCCCA 374
Query 357 ACTTATTGTTCTACTCTCAGACAAGCTGAGCATTCAGCTGCTGAAGTTGCTCTTAGTGCT 416
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 ACTTACTGTTCTACTCTCAGACAAGCTGAGCATTCAGCTGCTGAAGTTGCTCTTAGTGCT 434
Query 417 CTCTCTTCCAAGGGTCCTTCAAAGTCTCTAACTGCTAGAGTTCTAGATGAGACTGGGATC 476
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 CTCTCTTCCAAAGGTCCTTCAAAGTCTCTAACTGCTAGAGTTCTAGATGAGACTGGGATC 494
Query 477 TATAAGAATCTGCTTCAAGAGACAGCACATAGAGCTGGTCTTGATCTACCGGTTTACACA 536
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 495 TACAAGAATCTGCTTCAAGAGACAGCACACAGAGCTGGTCTTGATCTACCGGTTTACACA 554
Query 537 AGTGTGAGATCAGGACCTGGTCACATCCCAACGTTCTCTTGCACTGTGGAGCTTGCTGGA 596
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 555 AGTGTGAGATCAGGACCTGGTCACATCCCAACATTCTCTTGTACTGTGGAGCTTGCTGGA 614
Query 597 ATGAGTTTTAATGGAGAATCAGCAAAGACTAAGAAGCAAGCTGAGAAGAATGCAGCCATT 656
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 615 ATGAGTTTTAATGGAGAATCAGCAAAGACTAAGAAACAAGCTGAGAAGAATGCAGCCATT 674
Query 657 GCAGCTTGGTTCTCCTTGAGAAAAATGCCAAGCTTGGACCCATTAAGAGGTGAAGAGAAG 716
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 675 GCAGCTTGGTTCTCCTTGAGAAAAATGCCAAGATTGGACCCATTGAGAGGTGAAGAGAAG 734
Query 717 GAACAAGAGGTAGTTGCAAGAGTCCTCTCAAGATTTAGACCCAAAGAAGTGAAAAGAAGA 776
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 GAACAAGAGATAGTTGCAAGAGTCCTCTCAAGATTTAGACCCAAAGAAGTGAAAAGAAGA 794
Query 777 Gaaccaaaccagtc---aagaagaacagtcatcaaaacaattcgccaaaacacaacaaca 833
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 795 GAACCAAACCAGTCAAGAAGAAGAACAGTCATCAGAACAATTCGCCAAAACACAACAACA 854
Query 834 acaac--c-a-CAC--GAGACTTGTTGTGTGAGAAACTCAGATCCATCAATCTATATACC 887
||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 ACAACAACAACCACAGGAGACTTGTTGTGTGAGAAACTCAGATCCATCAATCTATATACC 914
Query 888 AACGAAGCTTCATCATCATCTCCACCACCACAGAGATTCTTGCCTTCAAGAACAAATCTC 947
|| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 915 AATGAAGCTTCATCATCATCACCACCACCACAGAGATTCTGGCCTTCAAGAACAAATCTC 974
Query 948 CCACAACAACAATCCAAAGTCAAATCATTGCTAGAGAAATGTCAAGAATATGCAGAGAAG 1007
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 ACACAAGAACAATCCAAAGTCAAATCATTGCTAGAGAAATGTCAAGAATATGCAGAGAAG 1034
Query 1008 AAACAGAGCCTAGATGATCCTAAACCAGAGCTCATAATCAAAAcatcatctccatcatca 1067
||||||||||||||||||||||| |||||| | | ||||||||||||||| |||||| ||
Sbjct 1035 AAACAGAGCCTAGATGATCCTAAGCCAGAGATGAGAATCAAAACATCATCACCATCACCA 1094
Query 1068 tcatcatcatcaGTGGAGAGAAACTGTTATAGTAAGCTATTACCCTTTTCAAGTTTTGGG 1127
| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
Sbjct 1095 TTATCATCATCAGTGGAGAGAAACTGTTATAGTAAGCTCTTACCCTTTCCAAGTTTTGTG 1154
Query 1128 TTAAACAATCAGAAACTAGCTCCAGCTGTTCACATAAGATCAGTGATCCCAGTTTGTTCA 1187
|||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1155 TTAAACCATCAGAAACTAGCTCCAGCAGTTCACATCAGATCAGTGATCCCAGTTTGTTCA 1214
Query 1188 GCTCCTCCACCAAAACCTAACCCTAACCCTAACCCATCACCGTCCACCACAAGGGAGCTG 1247
|||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||
Sbjct 1215 GCTCCTCCACCAAAACCTAACCCTAACCCTAATTCATCACCGTTCATCACAAGGGAGCTG 1274
Query 1248 GGAAATGGAGGCCAAGAGAAGAAGTCACTATCGAATTAGAATTAGAAACAAAATCTGGAT 1307
||||||||| ||||||||||||||||| || | |||||| ||||||||||||||||||||
Sbjct 1275 GGAAATGGAAGCCAAGAGAAGAAGTCATTACCAAATTAGGATTAGAAACAAAATCTGGAT 1334
Query 1308 CAAACCCATGATTAAAGGTCGTGTCTTTAGATAAACCCATGTTAAGGATATAATTATAGA 1367
||||||||||||||||||| ||||||||||||||||||||||||||||| | || |||||
Sbjct 1335 CAAACCCATGATTAAAGGTTGTGTCTTTAGATAAACCCATGTTAAGGATTTGATAATAGA 1394
Query 1368 GAGATTAGAGAAATGGGTAAAATCAAATCAG-TCATGGGTTTCTGTATGTTCGTCGTGTA 1426
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1395 GAGATTAGAGAAATGGGTAAAATCAAATCAGGTCATGGGTTTCTGTATGTTCGTCGTGTA 1454
Query 1427 AATTTGACtttttttGAATTTTACGATCTGACATGAAATCAATGTTTCTG 1476
|||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1455 AATTTGACTTTTTT-GAATTTTACGACCTGACATGAAATCAATGTTTCTG 1503
> AT5G41070.1 | Symbols: DRB5 | dsRNA-binding protein 5 | chr5:16438307-16440046
FORWARD LENGTH=1460
Length=1460
Score = 628 bits (340), Expect = 3e-179
Identities = 516/597 (86%), Gaps = 28/597 (5%)
Strand=Plus/Plus
Query 216 ATGTATAAGAATCAG-TTGCAAGAGCTTGCACAGAGAAGTTGTTTCAATC-TCCCATCAT 273
||||||||||||||| || ||||||||||||||||||||||||||||| | | |||||||
Sbjct 149 ATGTATAAGAATCAGCTT-CAAGAGCTTGCACAGAGAAGTTGTTTCAA-CTTACCATCAT 206
Query 274 ATACATGCACAAGAGAAGGACCAGATCATGCTCCAAGATTCAAAGCTAGTGTAAACTTTA 333
|||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||| |
Sbjct 207 ATACTTGCATAAGAGAAGGACCAGATCATGCTCCAAGATTCAAAGCTTCTGTTAACTTCA 266
Query 334 ATGGTGAAATATTTGAAAG-CCCAACTTATTGTTCTACTCTCAGACAAGCTGAGCATTCA 392
||||||| |||||||| || ||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 267 ATGGTGAGATATTTGAGAGTCCC-ACTTACTGTTCTACTCTCAGACAAGCTGAGCATGCA 325
Query 393 GCTGCTGAAGTTGCTCTTAGTGCT-CTCTCTTCCAAGGGT-CCTTCAAAGTCTCTAACTG 450
|||||||||||| | |||| || | || || | | || || |||||||||||||||||||
Sbjct 326 GCTGCTGAAGTTTCCCTTAATG-TCCTTTCGT-CTAGAGTCCCTTCAAAGTCTCTAACTG 383
Query 451 CT-AGAGTTCTAGATGAGACTGGGATCTATAAGAATCTGCTTCAAGAGACAGCACATAGA 509
|| ||| |||| |||||||| ||||| || ||||| ||||||||||||||||||||||||
Sbjct 384 CTAAGA-TTCTTGATGAGACAGGGATTTACAAGAACCTGCTTCAAGAGACAGCACATAGA 442
Query 510 GCTGGTCTTGATCTACCGGTTTACACAAGTGTGAGATCAGGACCTGGTCACATCCCAACG 569
||||||||||||||||| | ||||||||||||||||||||| || ||||| ||||| |
Sbjct 443 GCTGGTCTTGATCTACCAATGTACACAAGTGTGAGATCAGGATCTTGTCACTTCCCAG-G 501
Query 570 TT-CTCTTGCACTGTGGAGCTTGCTGGAATGA-GTTTTA-ATGGAGAATCAGCAAAGACT 626
|| |||||| ||||| || |||||||| |||| |||| | | |||||||||||||||||
Sbjct 502 TTTCTCTTGTACTGTTGAACTTGCTGGGATGACGTTT-ACA-GGAGAATCAGCAAAGACA 559
Query 627 AAGAAGCAAGCTGAGAAGAATGCAGCCATTGCAGCTTGGTTCTCCTTGA-GAAAAATGCC 685
||||| ||||||||||| || ||||||||||||||||||| ||| |||| ||||| || |
Sbjct 560 AAGAAACAAGCTGAGAAAAACGCAGCCATTGCAGCTTGGTCCTCTTTGAAGAAAA-TGTC 618
Query 686 AAGCTTGGACCCATTAAGAGGTGAAGAGAAGGAACAAGAGGTAGTTGCAAGAGTCCTCTC 745
||||||||| || |||| |||||||||||||||||| | ||| |||||||| |||||
Sbjct 619 AAGCTTGGATTCAC-AAGA--TGAAGAGAAGGAACAAGAAGCAGTAGCAAGAGTACTCTC 675
Query 746 AAGATTTAGACCCAAAGAAGTGAA-AAGAAGAGa-ac--caaaccagtcaagaagaa 798
|||||||| |||||||||||| || |||| |||| || ||||||| | |||||||
Sbjct 676 AAGATTTAAACCCAAAGAAGT-AAGAAGACGAGAGACAACAAACCAATGGAGAAGAA 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790790250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5