BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484479 Length=1476 Score E Sequences producing significant alignments: (Bits) Value AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:99... 2338 0.0 AT5G41070.1 | Symbols: DRB5 | dsRNA-binding protein 5 | chr5:16... 628 3e-179 > AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:9930270-9932074 REVERSE LENGTH=1503 Length=1503 Score = 2338 bits (1266), Expect = 0.0 Identities = 1418/1490 (95%), Gaps = 16/1490 (1%) Strand=Plus/Plus Query 1 AAATTCACTTTCAACATCAGAGAGCCCTAA--TCTTTTTGTTACTCATTACACCAAAAAC 58 |||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| Sbjct 16 AAATTCACTTTCAACATCAGAGAGCCCTAAGCTTTTTTTTTTACTCATTACACCAAAAAC 75 Query 59 CTTCAATGGCAACTTTAACAAAGTGAGTTTCTTGTATTTTTGCTACTTCTCTCTCTTTCT 118 |||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 76 CTTCAACGGCAA-TTTAACCAAGTGAGTTTCTTGTAGTTTTGCTACTTCTCTCTCTTTCT 134 Query 119 TGAACACTGTAGAGTCTTAAGGTCC--ATCACATGATAGAGACAAGCTCTTCTGTTTATT 176 ||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| Sbjct 135 TGAACACTGTAGAGTCTTAAGGTCCATATCACATGATGGAGACAAGCTCCTCTGTTTATA 194 Query 177 TATAAAGAGACACCAAATCTTAAATACCAATTTAAGCAGATGTATAAGAATCAGTTGCAA 236 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 195 TATTAAGAGACACCAAATCTTAAATACCAATTTAAGCAGATGTATAAGAATCAGTTGCAA 254 Query 237 GAGCTTGCACAGAGAAGTTGTTTCAATCTCCCATCATATACATGCACAAGAGAAGGACCA 296 |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 255 GAGCTTGCACAGAGGAGTTGTTTCAGTCTCCCATCATATACATGCACAAGAGAAGGACCA 314 Query 297 GATCATGCTCCAAGATTCAAAGCTAGTGTAAACTTTAATGGTGAAATATTTGAAAGCCCA 356 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 315 GATCATGCTCCAAGATTCAAAGCTAGTGTAAACTTCAATGGTGAGATATTTGAAAGCCCA 374 Query 357 ACTTATTGTTCTACTCTCAGACAAGCTGAGCATTCAGCTGCTGAAGTTGCTCTTAGTGCT 416 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 375 ACTTACTGTTCTACTCTCAGACAAGCTGAGCATTCAGCTGCTGAAGTTGCTCTTAGTGCT 434 Query 417 CTCTCTTCCAAGGGTCCTTCAAAGTCTCTAACTGCTAGAGTTCTAGATGAGACTGGGATC 476 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 435 CTCTCTTCCAAAGGTCCTTCAAAGTCTCTAACTGCTAGAGTTCTAGATGAGACTGGGATC 494 Query 477 TATAAGAATCTGCTTCAAGAGACAGCACATAGAGCTGGTCTTGATCTACCGGTTTACACA 536 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 495 TACAAGAATCTGCTTCAAGAGACAGCACACAGAGCTGGTCTTGATCTACCGGTTTACACA 554 Query 537 AGTGTGAGATCAGGACCTGGTCACATCCCAACGTTCTCTTGCACTGTGGAGCTTGCTGGA 596 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 555 AGTGTGAGATCAGGACCTGGTCACATCCCAACATTCTCTTGTACTGTGGAGCTTGCTGGA 614 Query 597 ATGAGTTTTAATGGAGAATCAGCAAAGACTAAGAAGCAAGCTGAGAAGAATGCAGCCATT 656 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 615 ATGAGTTTTAATGGAGAATCAGCAAAGACTAAGAAACAAGCTGAGAAGAATGCAGCCATT 674 Query 657 GCAGCTTGGTTCTCCTTGAGAAAAATGCCAAGCTTGGACCCATTAAGAGGTGAAGAGAAG 716 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 675 GCAGCTTGGTTCTCCTTGAGAAAAATGCCAAGATTGGACCCATTGAGAGGTGAAGAGAAG 734 Query 717 GAACAAGAGGTAGTTGCAAGAGTCCTCTCAAGATTTAGACCCAAAGAAGTGAAAAGAAGA 776 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 735 GAACAAGAGATAGTTGCAAGAGTCCTCTCAAGATTTAGACCCAAAGAAGTGAAAAGAAGA 794 Query 777 Gaaccaaaccagtc---aagaagaacagtcatcaaaacaattcgccaaaacacaacaaca 833 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 795 GAACCAAACCAGTCAAGAAGAAGAACAGTCATCAGAACAATTCGCCAAAACACAACAACA 854 Query 834 acaac--c-a-CAC--GAGACTTGTTGTGTGAGAAACTCAGATCCATCAATCTATATACC 887 ||||| | | ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 855 ACAACAACAACCACAGGAGACTTGTTGTGTGAGAAACTCAGATCCATCAATCTATATACC 914 Query 888 AACGAAGCTTCATCATCATCTCCACCACCACAGAGATTCTTGCCTTCAAGAACAAATCTC 947 || ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 915 AATGAAGCTTCATCATCATCACCACCACCACAGAGATTCTGGCCTTCAAGAACAAATCTC 974 Query 948 CCACAACAACAATCCAAAGTCAAATCATTGCTAGAGAAATGTCAAGAATATGCAGAGAAG 1007 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 975 ACACAAGAACAATCCAAAGTCAAATCATTGCTAGAGAAATGTCAAGAATATGCAGAGAAG 1034 Query 1008 AAACAGAGCCTAGATGATCCTAAACCAGAGCTCATAATCAAAAcatcatctccatcatca 1067 ||||||||||||||||||||||| |||||| | | ||||||||||||||| |||||| || Sbjct 1035 AAACAGAGCCTAGATGATCCTAAGCCAGAGATGAGAATCAAAACATCATCACCATCACCA 1094 Query 1068 tcatcatcatcaGTGGAGAGAAACTGTTATAGTAAGCTATTACCCTTTTCAAGTTTTGGG 1127 | |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| | Sbjct 1095 TTATCATCATCAGTGGAGAGAAACTGTTATAGTAAGCTCTTACCCTTTCCAAGTTTTGTG 1154 Query 1128 TTAAACAATCAGAAACTAGCTCCAGCTGTTCACATAAGATCAGTGATCCCAGTTTGTTCA 1187 |||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1155 TTAAACCATCAGAAACTAGCTCCAGCAGTTCACATCAGATCAGTGATCCCAGTTTGTTCA 1214 Query 1188 GCTCCTCCACCAAAACCTAACCCTAACCCTAACCCATCACCGTCCACCACAAGGGAGCTG 1247 |||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||| Sbjct 1215 GCTCCTCCACCAAAACCTAACCCTAACCCTAATTCATCACCGTTCATCACAAGGGAGCTG 1274 Query 1248 GGAAATGGAGGCCAAGAGAAGAAGTCACTATCGAATTAGAATTAGAAACAAAATCTGGAT 1307 ||||||||| ||||||||||||||||| || | |||||| |||||||||||||||||||| Sbjct 1275 GGAAATGGAAGCCAAGAGAAGAAGTCATTACCAAATTAGGATTAGAAACAAAATCTGGAT 1334 Query 1308 CAAACCCATGATTAAAGGTCGTGTCTTTAGATAAACCCATGTTAAGGATATAATTATAGA 1367 ||||||||||||||||||| ||||||||||||||||||||||||||||| | || ||||| Sbjct 1335 CAAACCCATGATTAAAGGTTGTGTCTTTAGATAAACCCATGTTAAGGATTTGATAATAGA 1394 Query 1368 GAGATTAGAGAAATGGGTAAAATCAAATCAG-TCATGGGTTTCTGTATGTTCGTCGTGTA 1426 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1395 GAGATTAGAGAAATGGGTAAAATCAAATCAGGTCATGGGTTTCTGTATGTTCGTCGTGTA 1454 Query 1427 AATTTGACtttttttGAATTTTACGATCTGACATGAAATCAATGTTTCTG 1476 |||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1455 AATTTGACTTTTTT-GAATTTTACGACCTGACATGAAATCAATGTTTCTG 1503 > AT5G41070.1 | Symbols: DRB5 | dsRNA-binding protein 5 | chr5:16438307-16440046 FORWARD LENGTH=1460 Length=1460 Score = 628 bits (340), Expect = 3e-179 Identities = 516/597 (86%), Gaps = 28/597 (5%) Strand=Plus/Plus Query 216 ATGTATAAGAATCAG-TTGCAAGAGCTTGCACAGAGAAGTTGTTTCAATC-TCCCATCAT 273 ||||||||||||||| || ||||||||||||||||||||||||||||| | | ||||||| Sbjct 149 ATGTATAAGAATCAGCTT-CAAGAGCTTGCACAGAGAAGTTGTTTCAA-CTTACCATCAT 206 Query 274 ATACATGCACAAGAGAAGGACCAGATCATGCTCCAAGATTCAAAGCTAGTGTAAACTTTA 333 |||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||| | Sbjct 207 ATACTTGCATAAGAGAAGGACCAGATCATGCTCCAAGATTCAAAGCTTCTGTTAACTTCA 266 Query 334 ATGGTGAAATATTTGAAAG-CCCAACTTATTGTTCTACTCTCAGACAAGCTGAGCATTCA 392 ||||||| |||||||| || ||| ||||| ||||||||||||||||||||||||||| || Sbjct 267 ATGGTGAGATATTTGAGAGTCCC-ACTTACTGTTCTACTCTCAGACAAGCTGAGCATGCA 325 Query 393 GCTGCTGAAGTTGCTCTTAGTGCT-CTCTCTTCCAAGGGT-CCTTCAAAGTCTCTAACTG 450 |||||||||||| | |||| || | || || | | || || ||||||||||||||||||| Sbjct 326 GCTGCTGAAGTTTCCCTTAATG-TCCTTTCGT-CTAGAGTCCCTTCAAAGTCTCTAACTG 383 Query 451 CT-AGAGTTCTAGATGAGACTGGGATCTATAAGAATCTGCTTCAAGAGACAGCACATAGA 509 || ||| |||| |||||||| ||||| || ||||| |||||||||||||||||||||||| Sbjct 384 CTAAGA-TTCTTGATGAGACAGGGATTTACAAGAACCTGCTTCAAGAGACAGCACATAGA 442 Query 510 GCTGGTCTTGATCTACCGGTTTACACAAGTGTGAGATCAGGACCTGGTCACATCCCAACG 569 ||||||||||||||||| | ||||||||||||||||||||| || ||||| ||||| | Sbjct 443 GCTGGTCTTGATCTACCAATGTACACAAGTGTGAGATCAGGATCTTGTCACTTCCCAG-G 501 Query 570 TT-CTCTTGCACTGTGGAGCTTGCTGGAATGA-GTTTTA-ATGGAGAATCAGCAAAGACT 626 || |||||| ||||| || |||||||| |||| |||| | | ||||||||||||||||| Sbjct 502 TTTCTCTTGTACTGTTGAACTTGCTGGGATGACGTTT-ACA-GGAGAATCAGCAAAGACA 559 Query 627 AAGAAGCAAGCTGAGAAGAATGCAGCCATTGCAGCTTGGTTCTCCTTGA-GAAAAATGCC 685 ||||| ||||||||||| || ||||||||||||||||||| ||| |||| ||||| || | Sbjct 560 AAGAAACAAGCTGAGAAAAACGCAGCCATTGCAGCTTGGTCCTCTTTGAAGAAAA-TGTC 618 Query 686 AAGCTTGGACCCATTAAGAGGTGAAGAGAAGGAACAAGAGGTAGTTGCAAGAGTCCTCTC 745 ||||||||| || |||| |||||||||||||||||| | ||| |||||||| ||||| Sbjct 619 AAGCTTGGATTCAC-AAGA--TGAAGAGAAGGAACAAGAAGCAGTAGCAAGAGTACTCTC 675 Query 746 AAGATTTAGACCCAAAGAAGTGAA-AAGAAGAGa-ac--caaaccagtcaagaagaa 798 |||||||| |||||||||||| || |||| |||| || ||||||| | ||||||| Sbjct 676 AAGATTTAAACCCAAAGAAGT-AAGAAGACGAGAGACAACAAACCAATGGAGAAGAA 731 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72790790250 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5