BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484481
Length=1864
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26935.1 | Symbols: | DHHC-type zinc finger family protein ... 3038 0.0
AT5G41060.1 | Symbols: | DHHC-type zinc finger family protein ... 905 0.0
> AT3G26935.1 | Symbols: | DHHC-type zinc finger family protein
| chr3:9932600-9935499 REVERSE LENGTH=2014
Length=2014
Score = 3038 bits (1645), Expect = 0.0
Identities = 1816/1893 (96%), Gaps = 34/1893 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaCCCTTCTTTTTCGCTGGCTTACTCGTGCCCTTGTCGGCTTACTTCGCCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 AAAAAAAAAAACCCTTCTTTTTCGCTGGCTTACTCGTGCCCTTGTCGGCTTACTTCGCCG 136
Query 61 GAAATCTGAATTATCCTTTCGCCGGAGACT--TTACCCTTCTTCTTCCTT-ATCTGGGTA 117
||||||||||||||||||| |||||||||| ||||||||| |||| ||| |||| | |
Sbjct 137 GAAATCTGAATTATCCTTTTGCCGGAGACTACTTACCCTTC-TCTTTCTTCATCTTCG-A 194
Query 118 AAC-GGTTTATAAAGCTCAGGTCTTGGTGACGCCGTCGT----------GAGATTGAAGT 166
||| ||||| |||||||||| |||||||||||||||||| |||||||||||
Sbjct 195 AACGGGTTTTTAAAGCTCAGCTCTTGGTGACGCCGTCGTGAGAGAGAGAGAGATTGAAGT 254
Query 167 ------AGTAGAAATTGAGGTTGAGAGATGTATGTAGTGCCTCCTCCTCAGCGATCTGAT 220
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 255 AGAAGAAGAAGAAATTGAGGTTGAGAGATGTATGTAGTGCCTCCGCCTCAGCGATCTGAT 314
Query 221 TCTGGATCGAATGGTGATTTAAGGGTTTACCAAACTTGGAAAGGCAGCAATATATTCTTT 280
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TCTGGATCCAATGGTGATTTAAGGGTTTACCAAACTTGGAAAGGCAGCAATATATTCTTT 374
Query 281 CTTCAGGGAAGGTTTGTATTTGGCCCAGATGTAAGATCATTGGCGCTGACCATTTGTCTC 340
||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||
Sbjct 375 CTTCAGGGAAGGTTTGTATTTGGGCCAGATGTTAGATCACTGGCGCTGACCATTTGTCTC 434
Query 341 ATTGCTGTCCCTGTTACAATTTTCTGCATCTTTGTTGCAAGGAAGCTGATTGATGACTTC 400
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 435 ATTGCTGTCCCTGTTACAATTTTCTGCATCTTTGTCGCAAGGAAGCTAATTGATGACTTC 494
Query 401 TCCGATAGCTGGGGAGTATCAATAGTAGCTGTCGCCGTCGTGTTCACCATTTATGATTTA 460
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TCCGATAGCTGGGGAGTCTCAATAGTAGCTGTCGCCGTCGTGTTCACCATTTATGATTTA 554
Query 461 ATTCTTCTGCTGCTTACATCCGGAAGAGATCCAGGTATTATCCCAAGAAATGCTCATCCT 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 ATTCTTCTGCTGCTTACATCCGGAAGAGATCCAGGTATTATCCCAAGAAATGCTCATCCT 614
Query 521 CCAGAGCCTGAAGCCCTTGATGGAAACATGGATGCAGGGGCTGGCCAGACTCCGCAGCTG 580
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 CCAGAGCCTGAAACCCTTGATGGAAACATGGATGCAGGGGCTGGCCAGACTCCGCAGCTG 674
Query 581 CGACTGCCTCGCATTAAGGAAGTAGAGCTTAATGGAATCACATTTAAGGTCAAGTACTGT 640
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 675 CGATTGCCTCGCATTAAGGAAGTACAGCTTAATGGAATCACATTTAAGGTCAAGTACTGT 734
Query 641 GACACGTGCATGCTCTATAGGCCGCCTCGCTGCTCCCATTGCTCAATTTGCAACAACTGC 700
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 735 GACACTTGCATGCTCTATAGGCCGCCTCGCTGCTCGCATTGCTCAATTTGCAACAACTGC 794
Query 701 GTAGAAAGGTTTGACCATCACTGCCCGTGGGTTGGCCAATGTATTGGGATGAGGAACTAC 760
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 795 GTAGAAAGGTTTGACCATCACTGCCCTTGGGTCGGCCAATGTATTGGGATGAGGAACTAC 854
Query 761 CGATTCTTCTTCATGTTTGTCTTCTCCACGACCCTTCTCTGTATATATGTGTTTGCCTTC 820
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 855 CGATTCTTCTTCATGTTCGTCTTCTCCACGACCCTTCTATGTATATATGTGTTTGCCTTC 914
Query 821 TGCTGGGTCTATATAAGAAAGATTATGGAATCAGAGCACACAACCACTTGGAAGGCAATG 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 TGCTGGGTCTATATAAGAAAGATTATGGAATCAGAGCACACAACCACTTGGAAGGCAATG 974
Query 881 CTTAAAACTCCTGCCTCCATTGTTCTAATAATCTACACATTCATATCAATGTGGTTTGTT 940
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 975 CTTAAAACTCCTGCCTCCATTGTTCTAATAATATACACATTCATATCAATGTGGTTTGTT 1034
Query 941 GGTGGCTTAACAGTTTTCCATTTATATCTCATCAGCACGAACCAGACGACATATGAGAAT 1000
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1035 GGTGGCTTAACAGTTTTCCATTTATATCTCATCAGCACGAACCAGACTACATACGAGAAT 1094
Query 1001 TTCCGATACAGATATGATCGGCGAAGCAACCCACATAACAAGGGAGTGGTTAATAACTTC 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 TTCCGATACAGATATGATCGGCGAAGCAACCCACATAACAAGGGAGTGGTTAATAACTTC 1154
Query 1061 AAAGAAACAtttttttCCACAATCCCTCCTTCAAAGAACGACTTTAGAGCTATGGTCCAG 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 AAAGAAACATTTTTTTCCACAATCCCTCCTTCAAAGAACGACTTTAGAGCTATGGTCCAG 1214
Query 1121 CGTGAACCTCCATTGCCTCCTAGATCTGTAGCAGGTGGTTTTATGAGTCCAAACATGGGT 1180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 CGTGAACCTCCATTACCTCCTAGATCTGTAGCAGGTGGTTTTATGAGTCCAAACATGGGT 1274
Query 1181 AAAGCCAATGATGAGATTGAAATGGGAAGGAAGGCTGTTTGGGCAGACATGGGTCCAGCA 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 AAAGCCAATGATGAGATTGAAATGGGAAGGAAGGCTGTTTGGGCAGACATGGGTCCAGCA 1334
Query 1241 ATGTCAGATCATGGTGACGGTAAACATGGTAAC---GAGCGGTTACATGTTAAGGACGGT 1297
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1335 ATGTCAGATCATGGTGACGGTAAACATGGTAACAATGAGCGGTTACATGTTAAGGACGGT 1394
Query 1298 GAGTTAGGCGAGCTATCTCCAGACATTAGGACAACAGTTGATGAACAGAGTGATAGGCCA 1357
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1395 GAGTTAGGCGAGCTATCTCCAGACATTAGGGCAACAGTTGATGAACAGAGTGATAGGCCA 1454
Query 1358 GGTATGCACCCGAGACGCTCAAGCTGGGGAAGGAAAAGCGGAAGCTGGGACATGTCACCA 1417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1455 AGTATGCACCCGAGACGCTCAAGCTGGGGAAGGAAAAGCGGAAGCTGGGACATGTCACCA 1514
Query 1418 GAAGTTATGGCCTTAGCAGCCAGAGTAGGAGAACAAAACCAGAACGGTGGAGGAAGCAGC 1477
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1515 GAAGTTATGGCCTTAGCAGCCAGAGTAGGAGAACAAAACCAGAACGGCGGAGGTAGCAGC 1574
Query 1478 AGCGGAAGCGGTTTAGTGACTGAGAACCGGCCTACATAATTGAATACACGGTTTAGCACG 1537
|||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||
Sbjct 1575 AGCGGAAGCGGTTTAGTGACGGAGAACCGGCCTACATAATTGATTACATGGTTTAGCACC 1634
Query 1538 GAAGGAAGAAAGAACATAGCCGAAGTTCGGTATGGTGAATACAGGTTTAGAGAAAATCTG 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1635 GAAGGAAGAAAGAACATAGCCGAAGTTCGGTATGGTGAATACAGGTTTAGAGAAAATCTG 1694
Query 1598 AGGAGAGtttttttttcttttctttttcaaatgcgt-tttttttt-tGG-ATTATTCAGC 1654
||| |||||| |||||||||||||||||||||| || |||||||| ||| ||||||||||
Sbjct 1695 AGGGGAGTTTCTTTTTCTTTTCTTTTTCAAATGTGTATTTTTTTTCTGGGATTATTCAGC 1754
Query 1655 TTATAATCAGTCATGTGGTTTGTGGTTTATGGAGGGAAAG-A-A-CTTGCTAATGTTCTT 1711
|||||||||||| ||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 1755 TTATAATCAGTCTTGTGGTTTGTGGTTTATGGAGGGAAAGCAGAACTTGCTAATGTTCTT 1814
Query 1712 AATGTGGAAAGTGTTTGTGTTGGGCTTTGTTGTGGTAAAGCAAAGGTTGAATTGGTGTGT 1771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1815 AATGTGGAAAGTGTTTGTGTTGGGCTTTGTTGTGGTAAAGCAAAGGTTGAATTGGTGTGT 1874
Query 1772 TGTTTGTATGAGTGAGctttcttctggatttgtttttttcttcttcttttcttctAGTTG 1831
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1875 TGTTTGTATGAGTGAGCTTTCTTCTGGATTTGTTTT---CTTCTTCTTTTCTTTTAGTTG 1931
Query 1832 TGTTAATACATTTAACCAGAGATCTATGTTTTT 1864
||||||||||||||||||||||| | |||||||
Sbjct 1932 TGTTAATACATTTAACCAGAGATTTCTGTTTTT 1964
> AT5G41060.1 | Symbols: | DHHC-type zinc finger family protein
| chr5:16435322-16437699 FORWARD LENGTH=1672
Length=1672
Score = 905 bits (490), Expect = 0.0
Identities = 894/1082 (83%), Gaps = 56/1082 (5%)
Strand=Plus/Plus
Query 169 TAGAAATTGAG-GTTGAGAGATGTATGTAGTGCCTCCTCCTCAGCGATCTGATTCTGGAT 227
|||||| |||| | ||||||||||||| ||| | |||||||| |||| | || |||||
Sbjct 262 TAGAAAGTGAGAG-AGAGAGATGTATGTGGTGACGCCTCCTCAAAGATCCGGTTTTGGAT 320
Query 228 -CGAATGGTGATTTAAGGGTTTACCAAACTTGGAAAGGCAGCAATATATTCTT-TCTTCA 285
|| || |||||||| ||||||||||||| |||||||| ||||||||||| || ||||||
Sbjct 321 CCG-ATTGTGATTTACGGGTTTACCAAACATGGAAAGGAAGCAATATATT-TTGTCTTCA 378
Query 286 GGGAAGGTTTGTATTTGGCCCAGATGTAAGATCA-TTGGCGCTGACCATTTGTCTCATTG 344
||||||||| | || || || |||||||||||| |||| |||||||| |||| ||||
Sbjct 379 AGGAAGGTTTATCTTCGGGCCGGATGTAAGATCACTTGG-TCTGACCATAAGTCTTATTG 437
Query 345 CTGTC-CCTGTTACAATTTTCTGCATCTTTGTTGCAAGGAAGCTGATTGATGACTTCTCC 403
|| | ||||||||||||||||||||||| || || || || || || |||||||||||
Sbjct 438 -TGGCACCTGTTACAATTTTCTGCATCTTCGTCGCTAGCAAACTAATGGATGACTTCTCT 496
Query 404 GATAGCTGGGGAGTATCAATAGTAGC-TGTCGCCGTCGTGTTCACCATTTATGATTTAAT 462
||||| |||||||| |||||| | | ||| || || || ||||||||||||||||| ||
Sbjct 497 GATAGTTGGGGAGTCTCAATAAT-CCTTGTTGCTGTTGTCTTCACCATTTATGATTTGAT 555
Query 463 TCTT-CTGCTGCTTACATCCGGAAGAGATCCAGGTATTATCCCAAGAAATGCTCATCCTC 521
| || ||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 556 T-TTGCTGATGCTTACATCCGGAAGAGATCCAGGGATTATCCCAAGAAATTCTCATCCTC 614
Query 522 CAGAGCCTGAAGCCCTTGATGGAAACA-TGGATGCAGGG-GCTGGCCAGACTCCGCAGCT 579
|||| || |||| ||||||| |||| || | | ||| | |||| ||| | ||
Sbjct 615 CAGAACCAGAAGTTGTTGATGGCAACACGGGCT-C-GGGAACAAGCCAAACT-C-CA--- 667
Query 580 GCGACTGCCTCGCATTAAGGAAGTAG-AGCTTAATGGAATCA-CATTTAAGGTCAAGTAC 637
|| ||||||| |||| ||||| | || ||||||||| | ||| ||||||||||||
Sbjct 668 -AGATTGCCTCGTGTTAAAGAAGTGGAAG-TTAATGGAA-AAGTATTCAAGGTCAAGTAC 724
Query 638 TGTGACACGTGCATGCTCTATAGGCCGCCTCGCTGCTCCCATTGCTCAATTTGCAACAAC 697
||||| || |||||||||||||| |||||||||||||| ||||| || ||||||||||||
Sbjct 725 TGTGATACTTGCATGCTCTATAGACCGCCTCGCTGCTCACATTGTTCGATTTGCAACAAC 784
Query 698 TGCGTAGAAAGGTTTGACCATCACTGCCCGTGGGTTGGCCAATGTATTG-GGATGAGGAA 756
|| ||||||||||||||||||||||| || |||||||| |||||||||| | || ||
Sbjct 785 TGTGTAGAAAGGTTTGACCATCACTGTCCTTGGGTTGGTCAATGTATTGCTCA-AAGAAA 843
Query 757 CTACCGATTCTTCTTCATGTTTGTCTTCTCCACGACCCTTCTCTGTATATATGTGTTTGC 816
||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||
Sbjct 844 CTATCGATTCTTCTTCATGTTTGTCTTCTCCACGACTCTTCTCTGTGTATATGTGTTCGC 903
Query 817 CTTCTGCTGGGTCTATATAA-GAAAGATTATGGAATCAGA-GCACACAACCA-CTTGGAA 873
||| || || ||||| |||| ||| ||| | || || || | | | || | |||| ||
Sbjct 904 CTTTTGTTGTGTCTACATAAAGAA-GATCAAAGAGTCCGAAG-ATATAAGTATCTTGAAA 961
Query 874 GGCAATGCTTAAAACTCCTGCCTCCATTGTTCTAATAATCTACACATTCATATC-A-ATG 931
| ||||||| |||||||| || ||||||| ||| ||| |||||||||||||||| | ||
Sbjct 962 G-CAATGCTCAAAACTCCAGCTTCCATTGCTCTGATACTCTACACATTCATATCTACAT- 1019
Query 932 TGGTTTGTTGGTGGCTTAACA-GTTTTCCATTTATATCTCATCAGCACGAACCAGACGAC 990
| || ||||| ||||||||| |||| |||| | |||||||||||||| || ||||| ||
Sbjct 1020 TC-TTCGTTGGAGGCTTAACATGTTT-CCATCTCTATCTCATCAGCACAAATCAGACTAC 1077
Query 991 ATATGAGAATTTCCGATACAGATATGATCGGCGA-AGCAACCCACATAACAAGGGAGTGG 1049
||||||||||||| ||||||| |||||||||| | ||||||||||||||||| |||||||
Sbjct 1078 ATATGAGAATTTCAGATACAGTTATGATCGGC-ATAGCAACCCACATAACAAAGGAGTGG 1136
Query 1050 TTAATAACTTCAAAGAAA-CAtttttttC-CACAATCCCTCCTTCAAAGAACGACTTTAG 1107
|| ||||||||||||||| | |||||||| | |||| ||||||||||||||| |||| ||
Sbjct 1137 TTGATAACTTCAAAGAAATC-TTTTTTTCTC-CAATACCTCCTTCAAAGAACAACTTCAG 1194
Query 1108 AGCTATGGT-CCA-GCGTGAACCTCCATTGCC-TCCTAGATCTGTAGCAGGTGGTTTTAT 1164
|||||||| ||| | | ||| |||| |||| || ||||| || | || ||||||||
Sbjct 1195 GGCTATGGTACCAAG-G-GAAAATCCAATGCCGTCG-AGATCAGTTGTTGGCGGTTTTAT 1251
Query 1165 GAGTCCAAACATGGGTAAAG-CCAATGATGAGATTGAAATGGGAAGGAAGGCTGTTTGGG 1223
||||||||||||||| |||| |||||||||| ||||||||||| ||||||| ||||||||
Sbjct 1252 GAGTCCAAACATGGG-AAAGGCCAATGATGATATTGAAATGGGGAGGAAGGGTGTTTGGG 1310
Query 1224 CA 1225
||
Sbjct 1311 CA 1312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92268601710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5