BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484482
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26940.1 | Symbols: CDG1 | Protein kinase superfamily protei... 1917 0.0
> AT3G26940.1 | Symbols: CDG1 | Protein kinase superfamily protein
| chr3:9936582-9939269 REVERSE LENGTH=1757
Length=1757
Score = 1917 bits (1038), Expect = 0.0
Identities = 1517/1733 (88%), Gaps = 93/1733 (5%)
Strand=Plus/Plus
Query 1 ATTTTAATCTAAATCTCCTTCCTTATCACCTCACAAAATTTCTC--GTATTTTTGTAATC 58
|||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||
Sbjct 25 ATTTTAATCTAAATCTCCTTCCTTATCACCTCAC-AAATTTCTCGTGTTTTTTTGTAATC 83
Query 59 ------T-AT------TT-TT-----GA-TCGAA--TCTGTTGATCGTGTGTTTCTTGGG 96
| || || || | ||||| ||||||||||||||||||||||||
Sbjct 84 AATTTTTGATGGAAAATTATTCCCAAAACTCGAATCTCTGTTGATCGTGTGTTTCTTGGG 143
Query 97 GAtttttttGATTCCTTCAAAGTTTTCATCtttttttATAACAAAACCGTTAATTCTTTG 156
| || | |||||||||||||||||||||| ||||| ||||||||||||||| |||||||
Sbjct 144 G-TTCGTCTGATTCCTTCAAAGTTTTCATC-TTTTTGATAACAAAACCGTTAGTTCTTTG 201
Query 157 TCATCGTGTGTG---ATCTCTTGAGCCCTATTGATAAACCATATAGAGAGAGAgtgtgtg 213
|| ||||||||| ||||||||||||||||||||||||||||| |||||| || ||||
Sbjct 202 TCCTCGTGTGTGATCATCTCTTGAGCCCTATTGATAAACCATAT--AGAGAGTGTATGTG 259
Query 214 tgtgtgtATCTTTGTTTATTGAGTGACACCAACAA-AAAAGAGATTATTTTCCTT--GA- 269
||||| ||||||||||||||||||||||||||||| |||| |||||||||||||| ||
Sbjct 260 TGTGTATATCTTTGTTTATTGAGTGACACCAACAACAAAA-AGATTATTTTCCTTGAGAT 318
Query 270 -GATT---A-ATAACATGGCTT-GTTGCTTGTGTTTTGGTCCCGGTCGGAAAATGAAGCT 323
|||| | | ||||||| || |||||||||||||| ||||| ||||||||| ||||||
Sbjct 319 TGATTAAAAGAAAACATGG-TTAGTTGCTTGTGTTTTCGTCCCAGTCGGAAAACGAAGCT 377
Query 324 CCAAGACAATTCTGATCAGATATCCATACGTAACCAGGCTAACCAGCCATCCTCCTCTTC 383
| ||||||| ||| || ||| ||||||||||||||| | | |||||||||||||
Sbjct 378 CAAAGACAAATCTCATAAGAGATCCATACGTAACCA-G------A--CATCCTCCTCTTC 428
Query 384 TGCCCAACCAGCTGCAACAG---TAGCAA-TACCTTCGTCAAGTTCACAAACAGTAGTGC 439
|||||||||||||| ||||| || || || |||||||||||||||||| |||||||
Sbjct 429 TGCCCAACCAGCTGGAACAGCAAAAG-AAGTAGATTCGTCAAGTTCACAAACCGTAGTGC 487
Query 440 AAGATTCTGCTAGATACAGATGTCAGATTTTCTCATACCGAGAACTCGCCATTGCGACTA 499
|||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 488 AAGATTCTTCTAGATACAGATGTCAGATTTTCTCATACAGAGAACTCGCCATCGCGACTA 547
Query 500 ACAGCTTCAGGGAA-GAATCTTTGATCGGAAGAGGTGGATTCGGAGCTGTGTATAAAGGA 558
||||||||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 548 ACAGCTTCA-GGAATGAATCTTTGATCGGAAGAGGTGGATTTGGAACTGTGTATAAAGGA 606
Query 559 AGGCTAAACAATGGAAAGAACATAGCTGTTAAAGTGCTTGATCAGTCTGGTGTTCAAGGA 618
||||||| || |||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 607 AGGCTAAGCACTGGACAGAACATAGCTGTTAAAATGCTTGATCAGTCTGGTATTCAAGGA 666
Query 619 GACAAAGAGTTTCTTGTGGAAGTCCTAATGCTCTCTCTCTTGCACCACCAAAACCTTGTG 678
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 667 GACAAAGAGTTTCTTGTGGAAGTCCTAATGCTCTCGCTCTTGCACCACCGAAACCTAGTG 726
Query 679 CATTTGTTCGGTTATTGCGCTGAAGGCGATCAAAGACTCCTTGTCTATGAATACATGCCT 738
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 727 CATTTGTTCGGTTATTGTGCTGAAGGCGATCAAAGACTCGTTGTCTATGAATACATGCCT 786
Query 739 CTTGGATCTGTAGAAGATCATCTTTACGATCTTAGTGATGGTCAAGAGGCTTTAGATTGG 798
||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 787 CTTGGATCTGTAGAAGATCATCTCTACGATCTTAGCGAGGGTCAAGAGGCTTTAGATTGG 846
Query 799 AACACAAGGATGCAGATAGCCCTAGGAGCGGCTAAAGGGTTAGCGTTTCTTCACAACGAA 858
|| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 847 AAGACAAGGATGAAGATAGCTCTAGGAGCGGCTAAAGGGTTAGCGTTTCTTCACAACGAA 906
Query 859 GCAAC-ACCTGCGGTGATATACAGAGATTTGAAAACTTCAAACATATTGTTGGATCATGA 917
|| || |||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 GC-ACAACCTCCTGTGATATACAGAGATTTGAAAACTTCAAACATATTGTTGGATCATGA 965
Query 918 ATATAAACCGAAGCTCTCTGATTTTGGACTTGCTAAGTTTGGTCCTAGTGGTGATATGTC 977
|||||||| |||||||| |||||||||||||| ||||||||||| |||| |||||||||
Sbjct 966 CTATAAACCTAAGCTCTCAGATTTTGGACTTGCAAAGTTTGGTCCAAGTGATGATATGTC 1025
Query 978 TCATGTCTCTACTAGAGTTATGGGAACTCATGGGTATTGTGCACCAGAGTACGCGAACAC 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 TCATGTCTCTACTAGAGTTATGGGAACTCATGGGTATTGTGCACCAGAGTACGCGAACAC 1085
Query 1038 CGGGAAATTGACGCTGAAATCTGATATTTATAGCCTTGGAGTTGTGATGTTGGAGCTTAT 1097
|||||| ||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 1086 CGGGAAGTTGACGCTGAAATCTGATATTTATAGCTTTGGAGTTGTGCTGCTGGAGCTTAT 1145
Query 1098 CACTGGACGCAAAGCTCTTTTGCCCTCATCCGAATGCGTTGGTACTCAAAGTCGCTATCT 1157
|| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1146 CAGTGGACGCAAAGCTCTTATGCCCTCATCCGAATGCGTTGGTAATCAAAGTCGCTATCT 1205
Query 1158 TGTGCATTGGGCACGACAATTGTGGTTGGATGGCA-AAGTAATGCAGATTGTAGATCCAA 1216
||||||||||||||||| |||| ||| |||||| || ||| |||||||||||||||||
Sbjct 1206 TGTGCATTGGGCACGACCGTTGTTCTTGAATGGCAGAA-TAAGGCAGATTGTAGATCCAA 1264
Query 1217 TGTTATTAACAAAAGGCCGTTTATCGAGTAT-CGTTGTTTTTAGAAGTATCGAAGTGGCA 1275
|||| || ||||||| |||| |||| ||| | || ||| |||| |||| ||||||||
Sbjct 1265 GGTTAGCAAGAAAAGGCGGTTTTTCGAATATAC-TTCTTTATAGAGGTATTGAAGTGGCC 1323
Query 1276 ATGAAGTGTCTAATGGAAGAAGCAAACGCTAGACCATTGATCAGCGAGGTCGTGGATTCT 1335
| ||| ||| |||||||||||||||||||||| ||||||| | |||||||| | |
Sbjct 1324 TTTCTGTGCCTAGCAGAAGAAGCAAACGCTAGACCATCGATCAGCCAAGTCGTGGAGTGT 1383
Query 1336 CT-AAGATATATCGTTGATCACACAATGAGGAAAGAAAGGAG--C-AGGCTTAGACGAG- 1390
|| ||| |||||| ||||||||||||| ||||| |||||||| | |||| ||||| |
Sbjct 1384 CTTAAG-TATATCATTGATCACACAATTAGGAAGGAAAGGAGAACTAGGCGTAGACTACT 1442
Query 1391 A--AGGAAATATGGATGGGGCGGGGACATCGAGCTCACCGGATGAGACGAGAAGGATGTT 1448
| |||||||| ||||||||||||||||||||| |||||||||||||| | | | |||
Sbjct 1443 AGGAGGAAATAAGGATGGGGCGGGGACATCGAGGTCACCGGATGAGAC-A-ATG-ATGAG 1499
Query 1449 TACGGTTAGA-GAAGAAGGAGAA-A-GTC-CT-G--AAGAAGCTATTGAGAGAAGGAGAC 1501
| | ||||| ||||||| |||| | || || | ||||||||||||||||||||||
Sbjct 1500 GATG-TTAGAAGAAGAAGAAGAATACGTAACTAGTGAAGAAGCTATTGAGAGAAGGAGGG 1558
Query 1502 TAGTCGTGGATGATGCTCTTACTTGGGCCGGCGTGAATCGGCCGAGAGGGACTACGCCAC 1561
|| ||||||||||||||| |||||||||||| ||||| || ||| ||| |||||||||
Sbjct 1559 TAATCGTGGATGATGCTCGTACTTGGGCCGGTATGAATAGGA-GAG-GGG-CTACGCCAC 1615
Query 1562 CAACGCCGAGTCCATGAAAGTGAAG-AAACTTTTTTATTTAACT-GTTTTTCAAGTTATA 1619
|||| |||| ||||||||||||||| ||| ||||| ||| |||| |||||||||||||||
Sbjct 1616 CAACTCCGACTCCATGAAAGTGAAGTAAA-TTTTT-ATT-AACTTGTTTTTCAAGTTATA 1672
Query 1620 TTTGGTTCAGTTTGTTTGGTGTGACTATTGTTAGAAAATAACTTTTATTAAAA 1672
||||||| ||||||||||||| ||||||||||||||| || |||| ||||||
Sbjct 1673 TTTGGTTAAGTTTGTTTGGTGAGACTATTGTTAGAAACCAAATTTTGTTAAAA 1725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83433305790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5