BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484483
Length=1961
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26990.1 | Symbols: | ENTH/VHS family protein | chr3:994822... 2870 0.0
> AT3G26990.1 | Symbols: | ENTH/VHS family protein | chr3:9948223-9952041
REVERSE LENGTH=1960
Length=1960
Score = 2870 bits (1554), Expect = 0.0
Identities = 1836/1968 (93%), Gaps = 35/1968 (2%)
Strand=Plus/Plus
Query 1 TCCAAATCTAACCACGACGAAGATTATTTCCAAACTGCTCAAACTTCTCCGGCGGA-TTT 59
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1 TCCAAATCTAACCACGACGAAGATTATTTCCAAACTGCTCAAACTTCTCCGGC-GAGTTT 59
Query 60 TGGAGACATTATCGGAGAACGGCGCCGTTTTCTTCACCGTGATTTTCGTT-GCCCACTTC 118
|||||||||||||||| ||||||||| |||| || ||||||||||||||| || | ||||
Sbjct 60 TGGAGACATTATCGGAAAACGGCGCCATTTTATTAACCGTGATTTTCGTTGGCTC-CTTC 118
Query 119 ACTTCTAA-TGTTAGCTTCATCGCAACAATCTCCTTCTTCTGATTGATTCTCTCTGTTTT 177
||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 119 ACTGCTAATTGTTAGCATCATCGCAACAATCTCCTTCTTCTGATTGATTCTCTCTATTTT 178
Query 178 GTGAAGGCACACTGGGTTTTGAGCTGGTGTTGAAGCAATGGGTGGTTCATTTAATGCTCA 237
||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 179 GTGAAGGCACACTGGTTTTTGAGCTGGTGTTGAAGCAATGGGTAGTTCATTTAACGCTCA 238
Query 238 GATATTAGTTGAGAAGCTTGCCAAGCTCAACAATTCTCAAGCAAGCATAGAGACTTTATC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GATATTAGTTGAGAAGCTTGCCAAGCTCAACAATTCTCAAGCAAGCATAGAGACTTTATC 298
Query 298 ACATTGGTGTATCTTTCACATGAACAAGGCAAAGCATGTTGTGGAAACAAGGGGTAGGCA 357
||||||||||||||||||||||||||| ||||| |||||||| |||||| ||||||||||
Sbjct 299 ACATTGGTGTATCTTTCACATGAACAAAGCAAAACATGTTGTAGAAACATGGGGTAGGCA 358
Query 358 GTTTCACTGTGCCCCACGTGAGCAACGTTTGGCATACTTGTACCTCGCGAATGATATCTT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTTTCACTGTGCCCCACGTGAGCAACGTTTGGCATACTTGTACCTCGCGAATGATATCTT 418
Query 418 GCAGAATAGCAGGCGAAAAGGTTCAGAGTTTGTAGGTGAGTTCTGGAAAGTACTGCCTGA 477
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 419 GCAGAATAGCAGGCGAAAGGGTTCGGAGTTTGTAGGTGAGTTCTGGAAAGTACTCCCTGA 478
Query 478 TGCTCTTCGTGATATGATTGAAAATGGTGATGACTTTGGAAGAAAATCTGCACGTCGATT 537
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 479 TGCTCTTCGTGATATGATTGAAAATGGTGATGACTTTGGAAGAAAATCCGCACGCCGATT 538
Query 538 GGTTAATATATGGGAAGAAAGGAAAGTTTTTGGATCCCGTGGACAAATTCTCAAAGAAGA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GGTTAATATATGGGAAGAAAGGAAAGTTTTTGGATCCCGTGGACAAATTCTCAAAGAAGA 598
Query 598 ACTTCTGGGAAGGCAGCCTGAAAATGGAACCAGAAATGGAAATCTCGTGCCACTAAAGCT 657
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 599 ACTTCTGGGAAGACAGCCTGAAAATGGAACCAGAAACGGAAATCTCGTGCCACTTAAGCT 658
Query 658 TTCTGTTCCTCAGAGACAGGCAAATGGATCTACACTGGAGAAAGTAGTGTCTGCCGTTGA 717
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct 659 TTCTGTTCCTCAGAGACAGGTAAATGGATCCACACTGGAGAAAGTAGTGTCTGCTGTTGA 718
Query 718 AGTTCTTCATGGTGTTCAAATTGATGAGGATGCTATTGTTGGAAAATGTACCAATGCTGC 777
||||||||| || ||||| ||||||||||||||| |||||||||||| ||| ||||||||
Sbjct 719 AGTTCTTCACGGCGTTCAGATTGATGAGGATGCTCTTGTTGGAAAATCTACTAATGCTGC 778
Query 778 TGGTTACCTTGAGAAAGCAACACAAGAGGTGGAGAGAGATCTTAGTTCAGGACACACCCC 837
|||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 779 TGGTTACCTTGAGAAAGCAACACAAGAGGTTGAAAGAGATCTTAGTTCAGGACACGCCCC 838
Query 838 TGGGCCAGCGGTGGTAAAGGAGTTGCAGGGACAACATGCCATATTGAGAGACTGCATCGA 897
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 839 TGGGCCAGCGGTGGTGAAGGAGTTGCAGGGACAACATGTCATATTGAGAGACTGCATCGA 898
Query 898 ACAGCTAGGGGCAATGGAGACATCCAGAACAAATCTTATCTCACATCTGAGAGAAGCTTT 957
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 899 ACAGCTAGGGGCAATGGAGACATCCAGAACAAGTCTTATCTCACATTTGAGAGAAGCTTT 958
Query 958 ACAAGAACAGGAACTCAAGCTGGGGCAAGTCCGCAACCACCTTCAGATTGCTCGGTTTCA 1017
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 959 ACAAGAACAGGAACTCAAGCTGGAGCAAGTCCGTAACCACCTTCAGATTGCTCGGTTTCA 1018
Query 1018 ATCAGACCGAACTGGTGATCTCTGCAGACAGCTTCTAGACCATGGTGGTAGTTCACGGCC 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1019 ATCAGACCGAACTGGTGATCTCTGCAGACAGCTTCTAGACCATGGTGGTAGTTCACAGCC 1078
Query 1078 TCCTGCTACAGAAGAAGAAGAGTCAAAAGAAGCCATCAAACTTCCATCCGCTGTAGCAGC 1137
|||||||||||||||||||||||||||||||| |||||| || ||||| ||| ||||||
Sbjct 1079 TCCTGCTACAGAAGAAGAAGAGTCAAAAGAAGTTATCAAAGTTTCATCCACTGCAGCAGC 1138
Query 1138 ACCACAAAGCTTCACACACAGTGATGTGGAACAATCTGCACCGGTTATGTTTACTTCAAA 1197
||||||||||||||||||||| |||||||||||||||||||| ||||||||| | |||||
Sbjct 1139 ACCACAAAGCTTCACACACAGCGATGTGGAACAATCTGCACCAGTTATGTTTGCCTCAAA 1198
Query 1198 CCCAACTCAAACAGTTGGA-GACCCAAGAAAAACTGCGGCTGCCGCAGTGGTAGCAAAGC 1256
|||||||||| | | |||| ||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 1199 CCCAACTCAATC-GCTGGAAGACCCAAGAAAAACTGCTGCTGCTGCAGTGGTAGCTAAGC 1257
Query 1257 TAACTGCCTCAACTTCCTCAGCCGAGATGCTCTCCTATGTTCTCTCATCCTTAGCCTCCG 1316
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1258 TAACTGCTTCAACTTCCTCAGCCGAGATGCTCTCCTATGTTCTCTCCTCCTTAGCCTCCG 1317
Query 1317 AAGGCCTCATCGGAAACAACAACCCACCTGCTGTAACAGAAACTCTATCTTCCGTCGACT 1376
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1318 AAGGCATCATCGGAAACAACAACCCACCTGCTGTAACAGAAACTCTATCATCCGTCGATT 1377
Query 1377 ACCCACCAGAGAAAAGACCCAAGCTTCAAAACCAAGACCAGTCCTATCTCCCACCGCACC 1436
|||||||||||||||||| ||||||||||| || |||||||| |||||| |||||||||
Sbjct 1378 TCCCACCAGAGAAAAGACCTAAGCTTCAAAATCATGACCAGTCGTATCTCTCACCGCACC 1437
Query 1437 AACAGAACACTGCAACAACATCATccaccacacccccaccaccgcttccaccaccaccac 1496
| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1438 ATCAGAACACTGCAACAACATCATCCTCCACACCCCCACAACCGCTTCCACCACCACCAC 1497
Query 1497 caTTCCAGCTTCAACCGCAGTTCTTGCAGCCCTTACAGCCTCCTGGTCCTGTAAACCACA 1556
|||||||||||||||| ||||| |||||||| ||||||||||| || || ||||||||||
Sbjct 1498 CATTCCAGCTTCAACCTCAGTTTTTGCAGCCGTTACAGCCTCCCGGGCCAGTAAACCACA 1557
Query 1557 CACCATTcaactacaccatagcaaccactactgcaaccacacagcagcagcaacaacaac 1616
|||||||||||||||||||||||||| ||||||||||||| ||||| | |||||||||
Sbjct 1558 CACCATTCAACTACACCATAGCAACCTCTACTGCAACCACTCAGCA--A-CAACAACAA- 1613
Query 1617 aacagcaacaacaagaacaaGGTCCTCCTTGGGTTCCTGGGCTCACTCAACTTTCAACAA 1676
| ||||| | | |||| | |||| |||||||||||||||||||||||||
Sbjct 1614 ----G-AACAA---G-----G-TCCT--T-GGGTACCTGGGCTCACTCAACTTTCAACAA 1656
Query 1677 CCTCTGCTCCATCGGAGAATTCATACCAGAAGTTTCAGGGACAAGATGGTTTCTATGGCA 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 CCTCTGCTCCATCGGAGAATTCATACCAGAAGTTTCAGGGACAAGATGGTTTCTATGGCA 1716
Query 1737 TTAACTCATCAGTGCCTATTACACCTGTCAGTCGGCAGTAGAGTAAATCTGTTA-TAGGG 1795
|||||||||| ||||||||||||||||||| ||| |||||| ||||||||||| |||||
Sbjct 1717 TTAACTCATCTGTGCCTATTACACCTGTCACTCGCCAGTAGTGTAAATCTGTTCGTAGGG 1776
Query 1796 GGTGAATATAGCAAAAAGCTCGCTTTGtttttttggttttttt--GTTAAATATAGTTTT 1853
| | | |||||||||||| || |||| |||||||||||||||| ||||||||||||||
Sbjct 1777 GTTCA-TATAGCAAAAAGTTCACTTT-TTTTTTTGGTTTTTTTTTGTTAAATATAGTTTC 1834
Query 1854 AATGGTCTTTTGATAATTAGGATTTTACGTTCTTAAAATGTGCTCTGTATGCTTTCTAAT 1913
||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1835 AATGGGCTTTTGATAATTAGGATTTTATGTTCTTAAAATGTGCTTTGTATGCTTTCTAAT 1894
Query 1914 TGTGCGTACTAATCAAAAGGCTTCATCTCTGTAAACATTTCATAAAAA 1961
||||||| |||||| || || |||| |||||||||||| |||||||||
Sbjct 1895 TGTGCGT-CTAATCCAA-GGTTTCAACTCTGTAAACATATCATAAAAA 1940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97138054575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5