BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484484
Length=914
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26980.1 | Symbols: MUB4 | membrane-anchored ubiquitin-fold ... 1321 0.0
> AT3G26980.1 | Symbols: MUB4 | membrane-anchored ubiquitin-fold
protein 4 precursor | chr3:9946166-9948040 REVERSE LENGTH=985
Length=985
Score = 1321 bits (715), Expect = 0.0
Identities = 861/927 (93%), Gaps = 27/927 (3%)
Strand=Plus/Plus
Query 1 GTCTTTTTATCTTATTTCTTTACTCGTCAGGGATTCCCTGTAACGCGGCAATCCTGACGA 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2 GTCTTTTTATCTTATTTCCTTACTCGTCAGGGATTCCCTGTAACGCGGCAATCCTGACGA 61
Query 61 AAGATATATCAGAAATTTTTATAGGAATCAGATAGCAGCAATCTCTTAGCTGGATTTTTA 120
|||| |||||||||| ||| ||| |||||| ||||||||||||||||||||||| |||||
Sbjct 62 AAGACATATCAGAAACTTTGATA-GAATCACATAGCAGCAATCTCTTAGCTGGA-TTTTA 119
Query 121 CCAGCTTCAC-TTGAAGATTAGGTCATTTACCCTTTTAAGGGTTTCTCTCCTAC-TTCTT 178
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 CCAGCTTCACTTTG-AGATTAGGTCATTTACCCTTTTAAGGGTTTCTCTCCTACTTTCTT 178
Query 179 GA-TCTTCCCCACTCCCAAGACGCAAGACCTAGCACACTTTGACATTTGGATTGAGTGTC 237
|| || || || ||||||||| ||| |||||||| |||| |||||||||||||||||||
Sbjct 179 GATTC-TCTTCATTCCCAAGACTCAAAACCTAGCAAACTTGGACATTTGGATTGAGTGTC 237
Query 238 TCTATTTCGGGTCTCATTTGGGTGGATTCTTTGTGGTGAAA----TCTTGTGAGTGTTTT 293
|||| | ||||||||||||||||||||||||| |||||||| ||||||||| |||||
Sbjct 238 TCTAGTCCGGGTCTCATTTGGGTGGATTCTTTCTGGTGAAATCTTTCTTGTGAGAGTTTT 297
Query 294 GTTTTGGAAGAAAGAGA-AATCAAATGCCGGAGGAAGATTTGGTAGAACTTAAATTCCGG 352
|| |||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 298 GTATTGGGAGAAAGAGATAATCAAATGCCGGAGGAAGATTTGGTAGAACTGAAATTCCGG 357
Query 353 TTATATGACGGTTCAGATGTTGGCCCGTTTCAGTACTCTCCAACTGCCACAGTCTCAATG 412
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 358 TTATATGACGGTTCAGATGTTGGCCCGTTTCAGTACTCTCCAACCGCCACAGTGTCAATG 417
Query 413 CTCAAGGAGAGAATTGTCTCTGAATGGCCTAAAGACAAGAAGATTGTTCCAAAATCAGCT 472
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CTTAAGGAGAGAATTGTCTCTGAATGGCCTAAAGACAAGAAGATTGTTCCAAAATCAGCT 477
Query 473 AGTGACATCAAGTTGATAAATGCTGGTAAGATTTTGGAGAATGGTAAAACTGTTGCACAG 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGTGACATCAAGTTGATAAATGCTGGTAAGATTTTGGAGAATGGTAAAACTGTTGCACAG 537
Query 533 TGTAAAGCTCCATTTGATGATCTCCCTAAATCCGTCATTACAATGCATGTTGTCGTGCAA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TGTAAAGCTCCATTTGATGATCTCCCTAAATCCGTCATTACAATGCATGTTGTCGTGCAA 597
Query 593 CCGTCTCCAACAAAAGCAAGACCAGAGaaaaaaaTCGAAAAGGAAGAAGCCCCACAGAGA 652
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTGTCTCCAACAAAAGCAAGACCAGAGAAAAAAATCGAAAAGGAAGAAGCCCCACAGAGA 657
Query 653 AGCTTTTGCTCATGTACCATAATGTGAGAACAACAAGTAGTCCC--GTCTAAAAATCTGT 710
|||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||
Sbjct 658 AGCTTTTGCTCATGTACCATAATGTGAGAACAACAACAAGTCCCAAGTCAAAAAATCTGA 717
Query 711 AAGAGTTAAGTTTTGCTTCTCTGTGGT-TTTGTACTAAAAGACCCTA-AAACATAAACTA 768
||||||||||||||| ||||||||||| |||| |||||||||| || ||||||||||||
Sbjct 718 AAGAGTTAAGTTTTGATTCTCTGTGGTATTTG--CTAAAAGACCATATAAACATAAACTA 775
Query 769 CCATTTCCGCGCTTCATTTTCGATATGTTCTTCACAAGTTCATAGAAATCTTCATCAATG 828
|| || ||||| ||||| || ||||||||||||||| ||||| ||||||| |||
Sbjct 776 CC------GC--TTCATATTCGACATTTTCTTCACAAGTTCAAAGAAACCTTCATCTATG 827
Query 829 GCGTTATAAAGCTAGTCTATTAGAGTTGTTTCTTTTGAGTTGTGATG-AAAAACTTTTCT 887
||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| || |
Sbjct 828 GCGTTATAAAGCTAGTCTATTAGAGTTGTTTCTCTTGAGCTGTGATGGAAAAACTCTTGT 887
Query 888 TTGGAGCATCCTTTATAAAGATAAGAG 914
|||||||||||||||||||||||||||
Sbjct 888 TTGGAGCATCCTTTATAAAGATAAGAG 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44658156683
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5