BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484485
Length=1424
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27000.1 | Symbols: ARP2, ATARP2, WRM | actin related protei... 2246 0.0
> AT3G27000.1 | Symbols: ARP2, ATARP2, WRM | actin related protein
2 | chr3:9952563-9955941 REVERSE LENGTH=1551
Length=1551
Score = 2246 bits (1216), Expect = 0.0
Identities = 1375/1447 (95%), Gaps = 29/1447 (2%)
Strand=Plus/Plus
Query 1 CAAGTAGAGAAGAGTGATTCTTCGCTTCGATTCAAAGACAAG-TTTTTCTTTTGTTCCCT 59
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 24 CAAGTAGAGAAGAGTGATTCTTCGCTTCGATTCAAAGACAGGTTTTTTCTTTTGTTCCCT 83
Query 60 GAGAGATCGAATCGAAGAAATCTG--ATTGTTGTAATTCGATAAAAATCTGAAATTTCTA 117
|||||||||||||||||||||| | ||| ||||| ||||||||||||||| | | ||||
Sbjct 84 GAGAGATCGAATCGAAGAAATC-GAAATTTTTGTACTTCGATAAAAATCTGTAGTCTCTA 142
Query 118 TAGAAAATCGGAGGAGATGGACAACAAAAACGTCGTCGTTTGCGACAACGGCACCGGTTA 177
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 TAG-AAATCGGAGAAGATGGACAACAAAAACGTCGTCGTTTGCGACAACGGCACCGGTTA 201
Query 178 TGTGAAATGTGGATTTGCTGGAGAGAATTTTCCAACATCTGTTTTCCCCTGTGTCGTGGG 237
||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 202 TGTAAAATGTGGATTTGCTGGAGAGAATTTCCCAACGTCTGTTTTCCCCTGTGTCGTGGG 261
Query 238 AAGACCGTTGCTTCGGTATGAAGAATCACTCATGGAGCAGCAAGTCAAGGATATAGTTGT 297
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 262 AAGGCCATTGCTTCGGTATGAAGAATCACTCATGGAGCAACAAGTCAAGGATATAGTTGT 321
Query 298 TGGGGAGACTTGCTCTGAGCTTCGACATCAATTGGATATAAATTATCCTGTCCATAATGG 357
||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 322 TGGGGAGACTTGCTCTGAGCTCCGGCATCAATTGGATATAAATTATCCTGTCCACAATGG 381
Query 358 TATTGTGCAGAATTGGGAGGATATGGAACATGTTTGGGATCATGCTTTCTATAACGAATT 417
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 382 TATTGTGCAGAATTGGGATGATATGGAACATGTTTGGGATCATGCTTTCTATAACGAATT 441
Query 418 GAAAATCAATCCATCAGAGTGTAAGATATTGCTCACAGATCCACCTCTTAATCCCTCCAA 477
||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 442 GAAAATCAATCCATCTGACTGTAAGATATTGCTCACGGATCCACCTCTTAATCCGTCCAA 501
Query 478 GAATCGTGAAAAAATGATTGAGACAATGTTTGAGAAATACAATTTCGCTGGCGTTTTCAT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 GAATCGTGAAAAAATGATTGAGACAATGTTTGAGAAATACAATTTCGCTGGCGTTTTCAT 561
Query 538 TCAAATCCAAGCCGTTTTGACTCTCTATGCTCAAGGTTTGCTAACTGGTTTGGTTATTGA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 TCAAATCCAAGCCGTTTTGACTCTCTATGCTCAAGGTTTGCTAACTGGTTTGGTTATTGA 621
Query 598 TTCTGGTGATGGTGTTACTCATGTGGTTCCGGTGGTTGACGGCTACTCGTTCCCTCATCT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 TTCTGGTGATGGTGTTACTCATGTGGTTCCGGTGGTTGACGGCTACTCGTTCCCTCATCT 681
Query 658 TACCAAAAGAATGAATGTCGCTGGCAGACACATAACAGCATATCTCGTTGATCTACTATC 717
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 682 TACTAAAAGAATGAATGTTGCTGGCAGACACATAACAGCATATCTCGTTGATCTACTATC 741
Query 718 TCGACGAGGATATGCGATGAATAAAACGGCTGACTTTGAGACGGTTAGGGAAATTAAAGA 777
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 742 TCGACGAGGATATGCGATGAACAAAACAGCTGACTTTGAGACGGTTAGGGAAATTAAAGA 801
Query 778 GAAGCTCTGCTATATAAGTTATGATTACAAGAGAGAATCTCAGCTTGGCCTTGAGACAAC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 GAAGCTCTGCTATATAAGTTATGATTACAAGAGAGAATCTCAGCTTGGCCTTGAGACAAC 861
Query 838 CATCCTTGTTAAGAATTATACTCTTCCAGATGGGAGAGTCATAAAAGTAGGCACTGAAAG 897
||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 862 TATCCTTGTTAAGAATTATACTCTTCCAGATGGGAGGGTTATCAAAGTAGGCACTGAAAG 921
Query 898 ATTCCAAGCACCTGAAGCGCTGTTTACACCGGAACTCATTGATGTTGAAGGTGATGGAAT 957
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 922 ATTCCAAGCACCTGAAGCGCTTTTTACTCCGGAACTCATTGATGTTGAAGGTGATGGAAT 981
Query 958 GGCAGACATGGTTTTCCGCTGTATTCAAGAAATGGATATTGATAACCGCATGATGCTCTA 1017
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 982 GGCAGACATGGTTTTCCGATGTATTCAAGAAATGGATATTGATAACCGCATGATGCTCTA 1041
Query 1018 CCAACACATAGTTTTAAGTGGAGGAAGCACCATGTACCCAGGATTACCTAGCCGTCTTGA 1077
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1042 CCAACACATAGTTTTAAGCGGAGGTAGCACCATGTACCCAGGATTACCTAGCCGTCTTGA 1101
Query 1078 GAAAGAAATCCAGGATCGGTATCTCGACACAGTTCTAAAAGGAAACAAAGATGGCTTAAA 1137
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1102 GAAAGAAATACAGGATCGGTATCTCGACACAGTTCTAAAAGGAAACAAAGATGGCTTGAA 1161
Query 1138 GAAACTCAGATTGCGGATCGAAGATCCACCGAGGAGGAAACACATGGTATACCTCGGAGG 1197
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1162 GAAACTCAGATTGCGGATCGAAGATCCACCGAGAAGGAAACACATGGTATACCTCGGAGG 1221
Query 1198 TGCTGTTCTTGCAGGAATCATGAAGGACGCACCAGAGTTCTGGATCAATAGAGAAGACTA 1257
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1222 TGCTGTTCTTGCAGGAATCATGAAGGACGCACCAGAGTTCTGGATCAATAGAGAGGACTA 1281
Query 1258 TATGGAAGAAGGAATTAATTGTTTGAATAAAATGAGCCAAGCTTAA-AACTTTCAAAAGC 1316
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1282 TATGGAAGAAGGAATTAATTGTTTGAATAAAATGAGCCAAGCTTAATAACTTTCAAACGC 1341
Query 1317 AAAACTCAT--TT-T--TT--A----TT------AC--C-GTCAGGATGATTTAATTCCG 1356
| ||||||| || | || | || || | ||||||||||||||||||||
Sbjct 1342 AGAACTCATACTTGTACTTGTACCCCTTTTTTTTACTACCGTCAGGATGATTTAATTCCG 1401
Query 1357 TTTGTGAAT-CAGTATTTTAGGTTTCAAAGTTTGAGAAGAATTGGTTGC-GATTAGGAAT 1414
||||||||| |||||||||||||||||||||||||| | |||||||||| | ||||| ||
Sbjct 1402 TTTGTGAATTCAGTATTTTAGGTTTCAAAGTTTGAGTACAATTGGTTGCAG-TTAGGGAT 1460
Query 1415 CCAAAAT 1421
|||||||
Sbjct 1461 CCAAAAT 1467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70180361910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5