BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484486
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27010.1 | Symbols: AT-TCP20, PCF1, TCP20, ATTCP20 | TEOSINT... 1991 0.0
> AT3G27010.1 | Symbols: AT-TCP20, PCF1, TCP20, ATTCP20 | TEOSINTE
BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20
| chr3:9957376-9958898 REVERSE LENGTH=1420
Length=1420
Score = 1991 bits (1078), Expect = 0.0
Identities = 1343/1460 (92%), Gaps = 62/1460 (4%)
Strand=Plus/Plus
Query 1 GTAAATTCCCAAAAG-aaaaaaaaaaaaCTCGATACCTTTTCTTTTACAAAGTCGTCACA 59
|||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 GTAAATTCCC-AAAGAAAAAAAAAAAAACTCGATACCTTTTGTTTTACAAAGTCGTCACA 59
Query 60 ATTCTCAAACCCTTAATTGAATCCAAGAGAAAGAGAGAATTTTGATTAATTTAAG--TCT 117
||||| |||||||||||||||||| |||||| | |||||||||| ||||| |||
Sbjct 60 ATTCTGAAACCCTTAATTGAATCC------AAGAGA-ATTTTTGATTAAATTAAGTCTCT 112
Query 118 GGACCCTGAAGTCCCCACACAAGCAAGCTTCGATGGATCCCAAGAACCTAAATCGACACC 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 113 GGACCCTGAAGTCCCCACACAAGCAAGCTTCGATGGATCCCAAGAACCTAAATCGTCACC 172
Query 178 AAGTACCAAATTTCTTGAACCCACCACCACCA---CGAAATCAGGGTTTGGGAGATGGTG 234
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||
Sbjct 173 AAGTACCAAATTTCTTGAACCCACCACCACCACCGCGAAATCAGGGTTTGGTAGATGATG 232
Query 235 TTGTTG-TT-T-CCGACGACAAGGACGAGAATCGCAAACCAACATCTGAGATTAAAGATT 291
|| || || | | | | ||||||||||||||||||||| |||||||||||||||
Sbjct 233 ATGCTGCTTCTGCTGTTGTTTCCGACGAGAATCGCAAACCAACAACTGAGATTAAAGATT 292
Query 292 TCCAGATCGTGGTCTCTGCTTCCGACAAAGAACCAAACACTAAGAAGACTCAGAATCAGA 351
||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 293 TCCAGATCGTGGTCTCTGCTTCCGACAAAGAACCAAACA--A-GAAGAGTCAGAATCAGA 349
Query 352 ACCAGCTTGGTCCTAAGCGAAGCTCTAACAAAGACAGACACACTAAAGTCGAAGGTAGAG 411
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 ACCAGCTTGGTCCTAAGAGAAGCTCTAACAAAGACAGACACACTAAAGTCGAAGGTAGAG 409
Query 412 GTCGAAGAATTCGGATGCCTGCTCTTTGTGCTGCTAGAATTTTTCAATTGACTAGAGAAT 471
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 410 GTCGACGAATTCGGATGCCTGCTCTTTGTGCTGCTAGGATTTTTCAATTGACTAGAGAAT 469
Query 472 TGGGTCATAAATCGGATGGTGAAACAATCCAGTGGCTGCTTCAACAAGCTGAGCCATCGA 531
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 470 TGGGTCATAAATCTGATGGTGAAACTATCCAGTGGCTGCTTCAACAAGCTGAGCCATCGA 529
Query 532 TTATTGCAGCCACCGGTTCAGGAACTATACCTGCCTCTGCTTTAGCTTC---AGCTGCAA 588
|||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 530 TTATTGCAGCTACTGGTTCAGGAACTATACCGGCCTCTGCTTTAGCTTCTTCAGCTGCAA 589
Query 589 GCTCTGTCTCTAACCATCATCAAGGTGGGTCTCTTACTACTGGTTTAATGATCAGTCATG 648
| || || ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 590 -C-CT--CT--AACCATCATCAAGGTGGGTCTCTTACTGCTGGTTTAATGATCAGTCATG 643
Query 649 ACTTAGATGGTGGGTCTAGTAGT-G-G-TAGACCATTAAATTGGGGAATTGGTGGAGGTG 705
||||||||||||||||||||||| | | |||||||||||||||||| |||||||| ||||
Sbjct 644 ACTTAGATGGTGGGTCTAGTAGTAGTGGTAGACCATTAAATTGGGGGATTGGTGGCGGTG 703
Query 706 AAGGAGCTTCTAGGTCAAATTTACCAACTGGGTTGTGGCCAAATGTAGCTGGGTTTGGTT 765
|||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 704 AAGGAGTTTCTAGGTCAAGTTTACCAACTGGGTTATGGCCAAATGTAGCTGGGTTTGGTT 763
Query 766 CTGGTGTACCAACTACTGGGTTGATGAGTGAAGGAGCTGGGTATAGAATTGGGTTTCCTG 825
||||||| ||||| ||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 764 CTGGTGTGCCAACCACTGGTTTAATGAGTGAAGGAGCTGGTTATAGAATTGGGTTTCCTG 823
Query 826 GTTTTGAGTTTCCTGGTGTTGGTCCTATGAGTTTTGCATCTATTTTGGGTGGTGCTGGTG 885
||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 824 GTTTTGATTTTCCTGGTGTTGGTCATATGAGTTTTGCATCTATTTTGGGTGG-G------ 876
Query 886 GGAATCATAATCAGATGCCTGGACTTGAGTTAGGGTTGTCTCAAGAAGGGAATGTTGGGG 945
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 877 --AATCATAATCAGATGCCTGGACTTGAGTTAGGCTTGTCTCAAGAAGGGAATGTTGGTG 934
Query 946 TTTTGAATCCTCAGTCTTTTACTCAGATTTATCAACAGATGGGTCAAGCTCAAGCTCAGG 1005
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 935 TTTTGAATCCTCAGTCTTTTACTCAGATTTATCAACAGATGGGTCA-G-----GCTCAGG 988
Query 1006 CTCAGGCTCAAGGTAGGGTTCTTCACCATATGCATCATAACCATGAAGATCATCAGCAAG 1065
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 989 CTCAAGCTCAAGGTAGGGTTCTTCACCATATGCATCATAACCATGAAGAACATCAGCAAG 1048
Query 1066 AGAGTGGTGAGAAAGATGATTCTCAAGGCTCAGGTCGTTAAA-GGATTG--ttttttttt 1122
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1049 AGAGTGGTGAGAAAGATGATTCTCAAGGCTCAGGTCGTTAAAAGGATTGGGTTTTTTTTT 1108
Query 1123 -tATCTTCTGGATTTGAAAA-GCTTTTGGCTTTTGTTTTGTGATAATATTGTTGTAATTT 1180
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1109 GTATCTTCTGGATTTGAAAAAGCTTTTGGCTTTTGTTTTGTGATAATATTGTTGTAATTT 1168
Query 1181 GTATCACTATGGAgaagaaaaagaaaaaggaaaagGTTTTATACTGAGTGAGAGTGATAA 1240
||| ||| ||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 1169 GTACCACCATGGAGAAGAAAAAGAAAA-GG------TTATATACTGAGTGAGAGTGATAA 1221
Query 1241 TCTATACTTATTGAAACCTCTGCAAAAACACAGGGTGGAGTTTGTTGA-TACACAAAGCC 1299
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||
Sbjct 1222 TCTATACTTATTGAAACCTCTGCAAAAACACAAGGTGGAGTTTGTTGAATACACACAGCC 1281
Query 1300 AAAGAtttttttGTTTGGAGTCTTTAAGTTCCAGAGAGGCTTGTTTTTACTTATTCTCTG 1359
| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
Sbjct 1282 AGAGATTTTTTTGTTTGGAGTCTTTAAGTTGCAGAGAGGCTTGTTTTTACTTGTTCTGAG 1341
Query 1360 TGTTGTTGCTTTTGAATATCAAGAAACCGGCTTTTTTCA-ATAGTAACAACAATGGTAAT 1418
| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1342 TTTTGTTGCTTTTGAATATCAAGAAACCGGCTTTTTTCAGATAGTA-CAACAATGGTAAT 1400
Query 1419 GTATACTTGTCTTCCATCAC 1438
||||||||||||||||||||
Sbjct 1401 GTATACTTGTCTTCCATCAC 1420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70883169540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5