BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484491
Length=1267
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27060.1 | Symbols: TSO2, ATTSO2 | Ferritin/ribonucleotide r... 1827 0.0
> AT3G27060.1 | Symbols: TSO2, ATTSO2 | Ferritin/ribonucleotide
reductase-like family protein | chr3:9979866-9981295 REVERSE
LENGTH=1342
Length=1342
Score = 1827 bits (989), Expect = 0.0
Identities = 1166/1248 (93%), Gaps = 26/1248 (2%)
Strand=Plus/Plus
Query 1 CTCAACAAGCTTTTTTCTTT-GATAAAAATTCTCC-AACAAGCTTCTCGAAAACC-AACA 57
|||||||||||||||||||| ||||||||||| || ||||||||||||| ||||| ||||
Sbjct 1 CTCAACAAGCTTTTTTCTTTGGATAAAAATTC-CCGAACAAGCTTCTCG-AAACCAAACA 58
Query 58 AATTTCAAACCTTTTTAATATTTTCCCTCCTCTTA-TTTCCGTCTCCTCGACAAAAATTC 116
|||||||||| ||||||||| ||||||||||| || ||||| ||| | || |||||||||
Sbjct 59 AATTTCAAACATTTTTAATA-TTTCCCTCCTC-TATTTTCCCTCTTCACGTCAAAAATTC 116
Query 117 AAAAACCCCCAAAAACCCTCTAATCTCCAT-TATAAATACTCATCCCTAGatctcataat 175
||||| |||| |||||||| |||||||| | |||||||| ||| |||||||||| |||||
Sbjct 117 AAAAA-CCCC-AAAACCCTATAATCTCC-TATATAAATATTCAGCCCTAGATCTTATAAT 173
Query 176 tcatcaatcaaatc-atctcttcaatc-act-tc-tcttc-ttc-aa---tcaaat--ct 224
|||||||||||| | |||||||||||| | | || ||||| || || |||||| ||
Sbjct 174 TCATCAATCAAA-CAATCTCTTCAATCAAATCTCTTCTTCAATCAAATCTTCAAATCCCT 232
Query 225 tcaaagatgccttcaatGCCAGAAGAGCCGCTTCTAACACCAACCCCAGACAGATTCTGT 284
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 233 TCAAAGATGCCTTCAATGCCAGAAGAGCCGCTCCTAACACCAACCCCAGACAGATTCTGT 292
Query 285 ATGTTCCCAATTCACTACCCACAGATCTGGGAAATGTACAAAAAAGCCGAAGCATCATTC 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 ATGTTCCCAATTCACTACCCACAGATCTGGGAAATGTACAAAAAAGCCGAAGCATCATTC 352
Query 345 TGGACCGCTGAAGAAGTAGATCTATCACAAGACAACCGCGACTGGGAAAACAATCTCAAC 404
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 353 TGGACCGCCGAAGAAGTAGATCTATCACAAGACAACCGCGACTGGGAAAACAGTCTCAAC 412
Query 405 GACGGTGAACGTCACTTCATCAAACATGTCCTCGCTTTCTTCGCCGCATCCGACGGAATC 464
|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 413 GACGGTGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCTGCATCTGACGGAATC 472
Query 465 GTATTAGAGAATCTCGCTTCTCGATTCATGTCCGATGTTCAAGTCTCGGAGGCGCGTGCT 524
||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 473 GTACTAGAGAATCTCGCTTCTCGCTTCATGTCCGATGTTCAAGTCTCTGAGGCGCGTGCT 532
Query 525 TTCTACGGTTTCCAGATCGCGATTGAAAACATCCATTCGGAGATGTATAGTCTCCTTCTC 584
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 533 TTCTACGGTTTCCAGATCGCGATTGAAAACATCCACTCGGAGATGTATAGTCTCCTTCTC 592
Query 585 GATACGTATATCAAAGATAACAAAGAGAGAGATCATCTCTTTCGTGCCATCGAAACGATT 644
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 593 GATACTTATATCAAAGATAACAAAGAGAGAGATCATCTCTTTCGTGCCATTGAAACAATC 652
Query 645 CCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGATGGATCTCAAACTTTC 704
||||||||||| ||||||||||| ||||| |||||||||||||| || ||||| ||||||
Sbjct 653 CCTTGCGTCGCCAAGAAAGCTCAATGGGCTATGAAATGGATCGACGGTTCTCAGACTTTC 712
Query 705 GCCGAACGAATCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGAAGCTTTTGT 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GCCGAACGAATCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGAAGCTTTTGT 772
Query 765 TCAATCTTCTGGCTAAAGAAACGAGGACTCATGCCTGGACTAACATTTTCCAACGAATTG 824
|||||||||||||| |||||||||||||||||||||||| ||||||| || |||||||||
Sbjct 773 TCAATCTTCTGGCTGAAGAAACGAGGACTCATGCCTGGATTAACATTCTCAAACGAATTG 832
Query 825 ATCTCTCGAGACGAAGGACTACACTGCGATTTCGCTTGTCTTCTCTACACGCTTCTCAAA 884
||||| || |||||||| ||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 833 ATCTCACGTGACGAAGGTTTACACTGTGATTTCGCTTGTCTACTCTACACGCTACTCAAA 892
Query 885 ACGAAGCTTAGTGAAGAACGCGTGAAATCAATCGTTTGCGACGCGGTCGAAATCGAGAGA 944
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 893 ACAAAGCTTAGCGAAGAACGCGTGAAATCAATCGTCTGCGACGCGGTCGAAATCGAGAGA 952
Query 945 GAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTTGGGATGAACCGTGATTTGATGAGT 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 GAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTTGGGATGAACCGTGATTTGATGAGT 1012
Query 1005 CAGTATATTGAGTTTGTTGCGGATAGGCTTTTGGGTGCGCTTGGGTACGGGAAGGTGTAC 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CAGTATATTGAGTTTGTTGCGGATAGGCTTTTGGGTGCGCTTGGGTACGGGAAGGTGTAC 1072
Query 1065 GGTGCTACTAATCCGTTTGATTGGATGGAACTTATCTCGCTTCAAGGGAAAACTAACTTC 1124
|||| |||||||||||| ||||||||||||||||| || |||||||||||||| || |||
Sbjct 1073 GGTGTTACTAATCCGTTCGATTGGATGGAACTTATTTCACTTCAAGGGAAAACGAATTTC 1132
Query 1125 TTTGAGAAACGTGTTGGTGATTATCAGAAAG-CTTCCGTTATGTCTAGCGTTAATGGTAA 1183
|| |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||
Sbjct 1133 TTCGAGAAACGTGTTGGTGATTACCA-AAAGGCTTCCGTTATGTCTAGCGTTAATGGTAA 1191
Query 1184 CGGTGCGTTTGATAATCATGTCTTTTCTCTCGACGAAGATTTTTAAAG 1231
||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1192 CGGCGCGTTTGATAACCATGTCTTCTCTCTCGACGAAGATTTTTAAAG 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62298876345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5