BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484492
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27080.1 | Symbols: TOM20-3 | translocase of outer membrane ... 953 0.0
> AT3G27080.1 | Symbols: TOM20-3 | translocase of outer membrane
20 kDa subunit 3 | chr3:9985079-9986629 REVERSE LENGTH=811
Length=811
Score = 953 bits (516), Expect = 0.0
Identities = 606/649 (93%), Gaps = 7/649 (1%)
Strand=Plus/Plus
Query 1 AAGTTTTGTACGGAAGAAG-AAAGTTTTGAGAAGCCATGGATACGGAAGCCGAGTTCGAT 59
|||||||||||| |||||| |||| ||||||||||||||||||||||| | |||||||||
Sbjct 34 AAGTTTTGTACGAAAGAAGAAAAGCTTTGAGAAGCCATGGATACGGAAACTGAGTTCGAT 93
Query 60 AGGTTACTATTGTTCGAACAAATTCGTAAAGACGCAGAAGAGACCTACAAGTTAAACCCT 119
||| ||||||||||||||||||||||| ||||||| ||| | |||||||||| ||| |||
Sbjct 94 AGGATACTATTGTTCGAACAAATTCGTCAAGACGCCGAAAATACCTACAAGTCAAATCCT 153
Query 120 TTAGATGCCGATGATCTGACTAGATGGGGAGGA-TCTTTACTTGAGTTAGCTCAGTTTCA 178
|||||||||||| |||||||||||||||||||| | |||||| |||||| ||||||||||
Sbjct 154 TTAGATGCCGATAATCTGACTAGATGGGGAGGAGT-TTTACTCGAGTTATCTCAGTTTCA 212
Query 179 TAGCATCTCAGATTCAAAACAAATGATTCAAGAGGCCATCACAAAGTTCGAAGAAGCATT 238
||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 213 TAGCATCTCAGATGCAAAGCAAATGATTCAAGAGGCCATCACAAAGTTTGAAGAGGCATT 272
Query 239 GTTGATTGACCCGAAGAAAGATGAAGCGGTTTGGTGTATCGGGAATGCATACACTTCATT 298
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 273 GTTGATTGACCCAAAGAAAGATGAAGCGGTTTGGTGTATTGGGAATGCATACACTTCATT 332
Query 299 TGCGTTTTTGACTCCCGACGAGACTGAAGCTAAACATAATTTTGACTTGGCTACTCAGTT 358
||||||| ||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 333 TGCGTTTCTGACTCCTGACGAGACTGAAGCTAAACATAACTTTGACTTAGCTACTCAGTT 392
Query 359 CTTTCAACAAGCTGTGAATGAGCAACCAGATAAT-CAGCACTACCTGAAATCACTCGAAA 417
|||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 393 CTTTCAACAAGCTGTGGATGAGCAACCAGATAATACA-CACTACCTGAAATCACTCGAAA 451
Query 418 TGACGGCCAAGGCTCCACAACTGCACGCAG-AGGTTCACAAACATGGCTTAGGCTCACAA 476
||||||||||||||||||| |||||||||| || || ||||||| |||||||||||||||
Sbjct 452 TGACGGCCAAGGCTCCACAGCTGCACGCAGAAGCTT-ACAAACAAGGCTTAGGCTCACAA 510
Query 477 CCAATGGGTGGCGTTGAACCTTCAGCACCGCCGAGCTCAAAGGCAGTGAAGAATAAGAAA 536
||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 511 CCAATGGGTCGCGTTGAAGCTCCAGCACCGCCGAGCTCAAAGGCAGTGAAGAATAAGAAA 570
Query 537 AGTAGCGACGCGAAGTATGATGCTATGGGTTGGGTGATTCTAGCCATTGGTGTTGTTACT 596
||||| || || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 571 AGTAGTGATGCCAAGTATGATGCTATGGGTTGGGTGATTCTAGCCATTGGTGTTGTTGCT 630
Query 597 TGGATCAGTTTCGCGAAAGCTAATGTGCCTGTGTCTCCTCCTCGTTAAG 645
|||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 631 TGGATCAGTTTCGCGAAAGCTAATGTGCCTGTCTCTCCTCCTCGTTAAG 679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31145171140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5