BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484493
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27090.1 | Symbols: | DCD (Development and Cell Death) doma... 2161 0.0
> AT3G27090.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr3:9989540-9991826 FORWARD LENGTH=1440
Length=1440
Score = 2161 bits (1170), Expect = 0.0
Identities = 1330/1406 (95%), Gaps = 16/1406 (1%)
Strand=Plus/Plus
Query 1 TTCTTCTCTCACATTCTCTCTTCTGACGTGTTT-CCTTCTTCGGTTTCTCATCCTCACGT 59
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 10 TTCTTCTCTCTCATTCTCTCTTCTGACGTGTTTCCCTTCTTCGGTTTCTCATCCTCACGT 69
Query 60 CCGTCGGATTTTGAGGAAACGAAGAAGAA-AAGGTCTGTC-TCTTATGGTAGAGTTTTGA 117
||| ||||||| ||||||||||||||||| ||| | | | | || ||||||
Sbjct 70 CCGCCGGATTTCGAGGAAACGAAGAAGAAGAAGAAC-AACAAC-AACAAAAGCCTTTTGA 127
Query 118 GTTATGGACAGCTTCTGGCAATTGGGTGATGAGCTACGAGGTCAAACGAGAGCATCAGAG 177
| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 128 GATATGGACAGCTTCTGGCAATTAGGTGATGAGCTACGAGGTCAGACGAGAGCATCAGAG 187
Query 178 GATCACAAATGGTCTACTGTTGCAACGAAGCTAGCCGAGCAAACTAGAATGAAAGGGGAG 237
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 188 GATCACAAATGGTCTACTGTTGCAACGAAGCTAGCTGAGCAAACTAGAATGAAAGGGGAG 247
Query 238 AGGATGAACAATCTAGATCTCTCCAAAGGTTACACTGAGTTCAGGCCAAGTGACAAGTTT 297
|||||||||||||| |||||||||||||||||||||||||| || |||||||| || ||
Sbjct 248 AGGATGAACAATCTTGATCTCTCCAAAGGTTACACTGAGTTTAGACCAAGTGAGAAATTC 307
Query 298 AGTTTCCAAGAGAACAATCTTAACTTCAACATGTTGAATTTGGATGGCAAATTTGGTGAA 357
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 308 AGTTTCCAGGAGAACAATCTTAACTTCAACATGTTGAATTTGGATGGTAAATTTGGTGAA 367
Query 358 GGCATTATGGGGAAGACGTCGATGCAGAGCAATGTTTATAATATGAATACTGTTTTCCAG 417
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 AGCATCATGGGGAAGACTTCGATGCAGAGCAATGTTTATAATATGAATACTGTTTTCCAG 427
Query 418 AAGAATGAGTTTAAGAGTGGAGGGAACACGAAAGTTAACAAGTATAATGGTAATGTTGTT 477
|||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 428 AAGAATGACTTTAAGAGTGGAGGCAACATGAAAGTTAACAAGTATAATGGTAATGTTGTT 487
Query 478 ACTAACAAGGAGATGAGTAACAACAAACATAACAAC-A--GCAATGATAATGGGAATATG 534
|||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||
Sbjct 488 GCTAACAAGGAGATGAGCAACAACAAACATAACAACAACTGCAATGATAATGGGAATATG 547
Query 535 AATTTGGCTGTTGACAAGAGGTTTAAAACCTTGCCTGCTTCGGAGACACTTCCGAGGAAC 594
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 548 AATTTGGCTGTTGACAAGAGGTTTAAAACCTTGCCTGCTTCGGAGACTCTTCCGAGGAAT 607
Query 595 GAAGTTCTTGGTGGTTACATCTTTGTTTGCAACAATGATACCATGCAGGAGGATATGAAA 654
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 608 GAAGTTCTTGGTGGTTACATCTTTGTTTGCAACAATGATACTATGCAGGAGGATATGAAA 667
Query 655 CGTCACCTCTTTGGTTTACCTCCAAGATACAGAGACTCTGTTCGAGCTATAACACCTGGA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 CGTCACCTCTTTGGTTTACCTCCAAGATACAGAGACTCTGTTCGAGCTATAACACCTGGA 727
Query 715 TTGCCTCTGTTTCTCTACAACTACACCACTCACCAGCTCCATGGTATCTTTGAGGCAACA 774
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 728 TTGCCTCTGTTTCTTTACAACTACACCACTCACCAGCTTCATGGTATCTTTGAGGCAACA 787
Query 775 ACTTTTGGAGGTACTAATATTGATGCTACTGCTTGGGAAGACAAAAAGTGCAAAGGAGAG 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 ACTTTTGGAGGTACTAATATTGATGCTACTGCTTGGGAAGACAAAAAGTGCAAAGGAGAG 847
Query 835 TCAAGGTTTCCGGCTCAGGTAAGGATCAGAGTGAGGAAAATCTGCAAAGCCTTGGAAGAG 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TCAAGGTTTCCGGCTCAGGTAAGGATCAGAGTGAGGAAAATCTGCAAAGCCTTGGAAGAG 907
Query 895 GACTCCTTCAGGCCAGTTCTTCACCACTATGATGGTCCAAAGTTCCGCCTTGAGCTCTCT 954
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 908 GACTCCTTCAGGCCAGTACTTCACCACTATGATGGTCCAAAATTCCGCCTTGAGCTCTCT 967
Query 955 GTTCCTGAGACATTGGATCTGCTAGACCTCTGCGAACAAGCTGGTTCTGCATAAGCCGAA 1014
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 968 GTTCCTGAGACATTGGATCTGCTAGATCTTTGCGAACAAGCTGGTTCTGCATAAGCCGAA 1027
Query 1015 ACGATCAACCTTGCAATGCTGCGTTGCGAAGAGGGTG--GTTTTGTATGAAATCTATCTA 1072
||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||||
Sbjct 1028 ACGATCAACCTTGCAATGCCACGTTGCAAAGAGGGGGATGTTTTGTATGAAATCTATCTA 1087
Query 1073 TATATATGTATTACCTACCATAAGAGCGTAAGCTTTTGGGATTTAGTTAAGAGTCGGATT 1132
||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 TATAT--GTAAGACCTACCGTAAGAGCGTAAGCTTTTGGGATTTAGTTAAGAGTCGGATT 1145
Query 1133 CAAATGTATGTTTACTAAGAAGGGATGAGAGTATGTGTGGTCTTAAGGCAAGCAAAAGAG 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 CAAATGTATGTTTACTAAGAAGGGATGAGAGTATGTGTGGTCTTAAGGCAAGCAAAAGAG 1205
Query 1193 CGAAGAGGCTCTGCCGAATAAGCGACTACTCTCGTTC-gtgtcatgtctgatgtgtgatt 1251
|||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| |
Sbjct 1206 CGAAGAGGCTCTGCCGAATAAGCGACTACTCTTGTTCTGTGTCGTGTCTGATGTGTGAGT 1265
Query 1252 gtgtgtctgtgtttgtgAGAGATTCGATACTCTTTGAAACAAAGATTTATGTAGAAGAAT 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 GTGTGTCTGTGTTTGTGAGAGATTCGATACTCTTTGAAACAAAGATTTATGTAGAAGAAT 1325
Query 1312 ATAGAGA--GAAAGAGAGACTATAAACAGAGCTAAAAAATGATTTGAGCTACTGTTTGTG 1369
||||||| |||||| |||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1326 ATAGAGAAAGAAAGACT-ACTATAAACAGAGCCAAAAAATGATGTGAGCTACTGTTTGTG 1384
Query 1370 TTTGCTTGTGTAAGGAGAAAACAAAT 1395
||||||||||||||| |||||||||
Sbjct 1385 CTTGCTTGTGTAAGGATAAAACAAAT 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68724546105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5