BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484498
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27150.1 | Symbols: | Galactose oxidase/kelch repeat superf... 2098 0.0
> AT3G27150.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:10009442-10011641 REVERSE LENGTH=1632
Length=1632
Score = 2098 bits (1136), Expect = 0.0
Identities = 1403/1531 (92%), Gaps = 22/1531 (1%)
Strand=Plus/Plus
Query 1 AGAGGGAATGTCAAAAGTGTACTAGGCCGGGATTTTACAAAGACATGTTGACGCTAGGAG 60
||||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||||||
Sbjct 70 AGAGGGAATGTCAAAAGTGCACTAGGCCAGGATTTTACATAGAGATGTTGACGCTAGGAG 129
Query 61 AAGATCATA-CGGGTAGAATTCGGGCAAGCTCGAGCCT-GTCTAGGCCGAAGAAGCTTCG 118
||||||| | | ||||||||| |||||||||| || || ||||||| |||||||||||||
Sbjct 130 AAGATCAAATC-GGTAGAATTGGGGCAAGCTCTAG-CTGGTCTAGGTCGAAGAAGCTTCG 187
Query 119 GGTTCGTGGCTACGAGATTCCTGATCTAAACGTAGAACCTAGTTTGGATTGGGATGGGGA 178
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 GGTTCATCGCTACGAGATTCCTGATCTAAACGTAGAACCTAGTTTGGATTGGGATGGGGA 247
Query 179 AGAAACAGGGGAGGCCACTCAGACTCTGAGCAGTACCTGTTTGAGATCTCAGGATGCAGA 238
||||||||||||||||||| || ||||||||||||| ||||||| | || ||||||||||
Sbjct 248 AGAAACAGGGGAGGCCACTAAGGCTCTGAGCAGTACATGTTTGAAACCTAAGGATGCAGA 307
Query 239 TTATTGTTTACTAAATGTTCCTCAGCTCGTTTACGAGCTAGAGGTTGAGATACTTGCACG 298
|||||||||||||||||||||||||||||| |||||| ||||||| |||||||| |||||
Sbjct 308 TTATTGTTTACTAAATGTTCCTCAGCTCGTATACGAGTTAGAGGTCGAGATACTCGCACG 367
Query 299 CGTGCCGCGTTTCGAGTATTGGAAACTAAAGTTACTTAATAAAGGGTTTTCGAGTTTGCT 358
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 368 CGTGCCGCGTTTCGAGTATTGGAAACTAAAGTTACTTAATAAGGGGTTTTCGCGTTTGCT 427
Query 359 AAAGAGCGATGAAATTTTCAAGGTGAGACGAGAACGGGGTGTAGTTGAACCGTCTGTCTT 418
|||||| ||||| |||||||||||||| || || || |||||||||||||||||||||||
Sbjct 428 AAAGAGTGATGAGATTTTCAAGGTGAGGCGCGAGCGCGGTGTAGTTGAACCGTCTGTCTT 487
Query 419 TATGCTGTCGAGCGGTGATATGCGTTGGACGATGTTTGATAAGGGCTTTGAGAATTTTCA 478
|||| ||||||| ||||||| | |||||||||||||||| |||||||||| ||| | ||
Sbjct 488 TATGTTGTCGAGTGGTGATACGTGTTGGACGATGTTTGACAAGGGCTTTGGGAACTGCCA 547
Query 479 GAAGCTTCCGGAACTTCCTTCTGACATATGCTTCCTCCATGGAGATAAAGAGTCGCTTTG 538
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 548 GAAGCTTCCGGAACTTCCTTCTGACATATGCTTCCTCCATGGAGATAAAGAATCGCTTTG 607
Query 539 CGCAGGAACTCATTTGATTGTCACTGGGAAAGAAGAGAAGAGCATAGCCCTATGGCGGTA 598
||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 608 CGCTGGAACTCATTTGATTGTCACTGGGAAAGAGGAGAAGAGCATTGCGCTATGGCGGTA 667
Query 599 TGTGCTGGAGACAAGTAAATGGTTCAAAGGTCCTGCAATGATCACACCACGAATCTTGTT 658
| | ||||||| || ||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 668 CGAGTTGGAGACGAGCAAATGGTTCAAAGGTCCCGCGATGATCACACCGCGAATCTTGTT 727
Query 659 TGCTTCTGCTACTTGTGGGACTGTTGTGTTTGTAGCTGGTGGGTTGAAAATTGAAGGAAA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 TGCTTCTGCTACTTGTGGGACTGTTGTGTTTGTAGCTGGTGGGTTGAAAATTGAAGGAAA 787
Query 719 CGGGACCATGGAAGTTGTGGACAGCGTCGAGAAGTATGACTCTAAGACCAAAACGTGGAC 778
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 788 CGGGACCATGGAAGTTGTGGACAGCGTTGAGAAGTATGACTCTAAGACCAAAACGTGGAC 847
Query 779 GCTTCTCCGCGGAATGCATAAGCGGCGGAAGTTCTGCTCCGGGTGTTACTTGCGTGGCAG 838
|||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 848 GCTTCTACGCGGAATGCATAAGCGGCGGAAATTCTGCTCTGGGTGTTACTTGCGTGGCAA 907
Query 839 GTTTTACGTACTTGGAGGCCGGGATGAGAATGGTCAAAACCTAACTTGCGGAGAAAGTTA 898
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 GTTTTATGTTCTCGGAGGCCGGGATGAGAATGGTCAAAACCTAACTTGCGGAGAAAGTTA 967
Query 899 CGACGAGAAGACAGA-CACATGGGAACTAATACCGGACATTCTCAAAGACATGTCTTTCT 957
|||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 968 CGACGAGAAGAC-GAACACATGGGAACTCATACCGGACATTCTCAAAGACATGTCTTTCT 1026
Query 958 CTTCTGTCCAATCTCCGCCCCTCATTGCGGTGGTTGGGGATGATCTTTACTCGTTGGAAA 1017
|||||||||||||||| || ||||| || ||||||||||||||||||||||| |||||||
Sbjct 1027 CTTCTGTCCAATCTCCACCGCTCATCGCAGTGGTTGGGGATGATCTTTACTCATTGGAAA 1086
Query 1018 CCTCGGCAAACGAGCTTCGCGTTTATGATGCAAAGGCAAACGCCTGGAAGAAGCTTGGAG 1077
||||||| |||||||| ||||||||||||||||| |||||| | ||||||||||||||||
Sbjct 1087 CCTCGGCGAACGAGCTCCGCGTTTATGATGCAAATGCAAACTCTTGGAAGAAGCTTGGAG 1146
Query 1078 ATGTTCCCGTGAGAGCTAAGTCTAATGGAGGATGGGGAGTAGCGTTTAAGTCGCTTGGAG 1137
|||| |||||||| ||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 1147 ATGTGCCCGTGAGGGCTAAGTCTAATGGAGGATGGGGCGTTGCGTTTAAGTCACTTGGAG 1206
Query 1138 ACAAGCTGCTTGTGATTGGAGCATCAGCGGGTCCGTCTAGGGCCGAGACAATGTCGGTTT 1197
| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1207 ATAAGTTGCTTGTGATTGGAGCATCAGCCGGTCCGTCTAGGGCCGAGACAATGTCGGTTT 1266
Query 1198 ACATGTGCCGTCCATCTGCTGTTCCTGAGAACAAGCTGTATTGGGAGGAGTCTAAACGCT 1257
||| | |||||||||| || ||||| |||||||||||||||||||||||||||||| |
Sbjct 1267 ACACGAGCCGTCCATCCGCAAATCCTGCGAACAAGCTGTATTGGGAGGAGTCTAAACGTT 1326
Query 1258 GCTGTGGCGTTAGGCTCAACCATTTTATCCTAAACTGTTGTGTAATGATTGCTTAAGGGT 1317
|||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1327 GCTGTGGCGTTAGGTTCAATCATTTTATCCTAAACTGTTGTGTAATGATTGCGTAAGGG- 1385
Query 1318 CTTCT-CTAAGAGAA-CTTGTGGTTTTGTGTGTGAG--ACTGAATAAAACGCTGTGCTAT 1373
| || | ||| || ||||||||||||||| | | |||||| |||| |||||||
Sbjct 1386 CAAAAACTTTGCGAAGCT-GTGGTTTTGTGTGTGTGTGATTGAATAGAACG--GTGCTAT 1442
Query 1374 TGTGGGTTATCTTCCGATTCAGCGTTTGCATCTTCACTTTTTGGTGAACGCTGGTGATTG 1433
|||||||||||||| ||||||| || | ||||| | ||||||||||||||| |||||||
Sbjct 1443 TGTGGGTTATCTTCTGATTCAGAGTCT--ATCTTGAGTTTTTGGTGAACGCTAGTGATTG 1500
Query 1434 CTCATTTTGTGATATATCTATCTTAAGCTTTTGTAAGATTGTGTTAAAAATAA-AAAGGT 1492
||||||||||||||||||| | ||||||||| ||||||||||||||||||| ||||||
Sbjct 1501 CTCATTTTGTGATATATCT-T---AAGCTTTTGCAAGATTGTGTTAAAAATAAGAAAGGT 1556
Query 1493 TATTTATATCTGAATAATTCGAAACAATCTG 1523
| || ||||||||||||||||||||||||||
Sbjct 1557 TGTT-ATATCTGAATAATTCGAAACAATCTG 1586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75150215865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5