BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484503
Length=739
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27200.1 | Symbols: | Cupredoxin superfamily protein | chr3... 1024 0.0
> AT3G27200.1 | Symbols: | Cupredoxin superfamily protein | chr3:10043522-10044373
REVERSE LENGTH=774
Length=774
Score = 1024 bits (554), Expect = 0.0
Identities = 700/765 (92%), Gaps = 31/765 (4%)
Strand=Plus/Plus
Query 1 TATATCAAAACCAAGTTCAA-TCTACTAAACCAATGAAAATGCAAGCAGTTCTTGTTATC 59
|||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 2 TATATCAAAACCGAGTTCAATTC-ACTAAACCAATGAAAATGCAAGCAGTTCTTGTTATC 60
Query 60 CTGGTTTTCTCCGGTTTAATCTCGGTTAAGACAACGTTAGCAGCACAACATGTGATCGGC 119
||||||||||||||||| | |||||||||||| |||||||||||| |||||||||||||
Sbjct 61 TTGGTTTTCTCCGGTTTACTTTCGGTTAAGACAGCGTTAGCAGCACGACATGTGATCGGC 120
Query 120 GGTAGCCAAGGCTGGGAACAATCCGTTGATTTTGATTCTTGGTCTTCTGATCAATCTTTC 179
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGGAGCCAAGGCTGGGAACAATCCGTTGATTTTGATTCTTGGTCTTCTGATCAATCTTTC 180
Query 180 AAAGTCGGCGACCAAATCGTTTTTAAGTACTCCGGACTACATAGCGTTGTAGAGCTAGGA 239
||||||||||||||||||||||||||||| || | |||||| |||||||| |||||||||
Sbjct 181 AAAGTCGGCGACCAAATCGTTTTTAAGTATTCAGAACTACACAGCGTTGTGGAGCTAGGA 240
Query 240 AGTGAAACGGCATACAAGAGTTGTGACCTGGGAACATCAGTCAATTCCTTAAGCTCTGGA 299
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 AGTGAAACAGCATACAAGAGTTGTGACCTGGGAACATCAGTTAATTCCTTAAGCTCTGGA 300
Query 300 AACGACGTCGTTAAGCTTTCTAAAACCGGTACTCGTTACTTCGCTTGTGGAACCGTTGGA 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AACGACGTCGTTAAGCTTTCTAAAACCGGTACTCGTTACTTCGCTTGTGGAACCGTTGGG 360
Query 360 CATTGCGAACAAGGCATGAAGATTAAAGTCAACGTTGTCTCTTCTGACTCCAAATCTGCT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 CATTGCGAACAAGGCATGAAGATTAAAGTCAACGTTGTCTCTTCTGACTCCAAATCCGCT 420
Query 420 TCCTCTCCG---GGTTCAGGTTCGG------ATTCAGGATCGGGTTCTGGATCTAGTTCG 470
|||||||| ||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 421 TCCTCTCCTTCAGGTTCAGGTTCGGGTTCGGATTCAGGGTCGGGTTCTGGATCTAGTTCA 480
Query 471 GGTCATGGGCTACGTGGTTCCATTGGATACATTTTCGTTGTTGGATCGTTGGTTATTGGT 530
||||||||| |||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 481 GGTCATGGGTTACGTGCTTCCACTGGATACATGTTCGTTGTTGGATCGTTGGTTATTGGT 540
Query 531 CTTTTTTGGGCTTACT-------G---A----TTTT--GTAATGTATCGAATATATATTC 574
||| |||||||||||| | | |||| |||||||||||||||||| ||
Sbjct 541 CTTATTTGGGCTTACTAATAATTGTTTAGGGCTTTTTTGTAATGTATCGAATATAT-TTG 599
Query 575 GTGGGGAGAGAATAAATATTTTTGGAATTATTAATTCGTACTTGTTGTTGTATTTTATAT 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTGGGGAGAGAATAAATATTTTTGGAATTATTAATTCGTACTTGTTGTTGTATTTTATAT 659
Query 635 AGTTCGGATATTTGAAATTATGATCTTATTCTATTATATATATCTTGTTTTTCATGTTTT 694
|||||||||||||| | || |||||| ||| | | |||||||||||||||||||||||||
Sbjct 660 AGTTCGGATATTTGCATTTCTGATCTAATTTTCT-ATATATATCTTGTTTTTCATGTTTT 718
Query 695 CTCAACCGATTGTCCACTTGATTGGTTCG-GTTGGAATATTCTTT 738
|||||||| | ||||||||||||||| | |||||||||||||||
Sbjct 719 CTCAACCGCTACTCCACTTGATTGGTT-GAGTTGGAATATTCTTT 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35867180958
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5