BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484506
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27240.1 | Symbols: | Cytochrome C1 family | chr3:10055789-... 2254 0.0
AT5G40810.1 | Symbols: | Cytochrome C1 family | chr5:16339893-... 1168 0.0
> AT3G27240.1 | Symbols: | Cytochrome C1 family | chr3:10055789-10058716
REVERSE LENGTH=1414
Length=1414
Score = 2254 bits (1220), Expect = 0.0
Identities = 1354/1419 (95%), Gaps = 7/1419 (0%)
Strand=Plus/Plus
Query 1 GCCGCTGTGTCATCGTGGAACTCCCATTTTCTCTCTTTTACTTCTTCGTTCCCAAACTCT 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 GCCGCTGTGTCATCGTGGAACTCCCATTTTCTCTCTTTTACTTGTTCGTTCCCAAACTCT 60
Query 61 TCTCCCTCGATCGTCTCCGTCGCCGATCTCGTTGCTTCATTTTCCGCGAGTTGATTGGTA 120
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 61 TCTCCCTCGATCGTCTCCGTCGCCGATCTCGTTTCTTCATTTTCCGCGTGTTGATTGGTA 120
Query 121 CAAAGCG-TTAATCAAATGGTTGGAGGAGGACTTATCCAGCAAATTCTTAGGAGGAAGCT 179
||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CAAAG-GTTTAATCAAATGGTTGGAGGAGGAGTTATCCAGCAAATTCTTAGGAGGAAGCT 179
Query 180 TCACTCTCAATCAGTTGCAACTCCGGTTTTGTCTTGGTTTTCTTCGAAGAAAGCTCATGA 239
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCACTCCCAATCACTTGCAACTCCGGTTTTGTCTTGGTTTTCTTCGAAGAAAGCTCATGA 239
Query 240 GGATGCTGGCTCTTCTGGTGTAAGAGCACTTGCCCTATTTGGTGCTGGTGTTACTGGACT 299
||||||||| |||||||||||||||||||||||| | || |||||||||||||| |||||
Sbjct 240 GGATGCTGGTTCTTCTGGTGTAAGAGCACTTGCCTTGTTGGGTGCTGGTGTTACAGGACT 299
Query 300 GTTGAGTTTTTCTACAGTTGCGTCTGCTGATGAAGCTGAACATGGATTGGAGTGTCCAGA 359
|||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||
Sbjct 300 GTTGAGTTTTTCTACAGTAGCATCTGCTGATGAGGCTGAACATGGATTGGAGAGTCCAGA 359
Query 360 CTACCCTTGGCCTCATGATGGCATTCTCAGCTCATATGATCATGCTTCGATCCGTCGTGG 419
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 360 GTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCGATCCGTCGTGG 419
Query 420 ACATCAAGTTTATCAGCAAGTCTGTGCATCTTGCCATTCAATGTCTCTGATCTCTTACCG 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 420 GCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTCAATGTCTCTGATCTCATACCG 479
Query 480 AGATTTGGTGGGTGTTGCCTACACAGAGGAAGAAGCAAAGGCAATGGCAGCTGAAATCGA 539
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 AGACTTGGTGGGTGTCGCCTACACAGAGGAAGAGGCAAAGGCAATGGCAGCTGAAATCGA 539
Query 540 GGTTGTAGATGGACCTAATGATGAGGGTGAGATGTTCACCCGTCCTGGTAAACTCAGTGA 599
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 GGTAGTAGATGGACCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGTAAACTCAGTGA 599
Query 600 CCGGTTTCCTGAACCATACT-CGAATGAATCAGCTGCAAGGTTTGCTAATGGGGGAGCGT 658
|||||||||| | ||||| | | ||||||||||||||||||||||||||||| |||||||
Sbjct 600 CCGGTTTCCTCAGCCATA-TGCAAATGAATCAGCTGCAAGGTTTGCTAATGGTGGAGCGT 658
Query 659 ATCCTCCTGATCTAAGTCTTATAACTAAGGCACGTCACAACGGTCCTAATTATGTCTTTG 718
|||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 659 ATCCTCCTGATCTAAGTCTTATAACTAAGGCACGTCACAATGGTCCAAACTATGTCTTTG 718
Query 719 CTCTTCTGACTGGTTACCGTGATCCGCCTGCTGGCATTTCAATTAGAGAGGGGTTACACT 778
| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 719 CGCTTCTGACTGGTTACCGTGATCCCCCTGCTGGCATATCGATTAGAGAGGGGTTACACT 778
Query 779 ACAATCCTTATTTCCCTGGGGGAGCAATTGCTATGCCGAAGATGCTCAATGATGAAGCTG 838
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 779 ACAATCCTTATTTCCCTGGGGGAGCAATTGCTATGCCGAAAATGCTCAATGATGAAGCTG 838
Query 839 TTGAGTATGAGGATGGTGTCCCCGCCACAGAGGCACAGATGGGTAAAGATATTGTATCAT 898
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTGAGTATGAAGATGGTGTCCCCGCCACAGAGGCACAGATGGGTAAAGATATTGTATCAT 898
Query 899 TCTTGGCCTGGGCAGCTGAACCAGAAATGGAAGAGAGGAAATTGATGGGTTTCAAATGGA 958
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 899 TCTTGGCCTGGGCAGCTGAACCAGAAATGGAAGAGAGGAAACTGATGGGTTTCAAATGGA 958
Query 959 TATTCCTACTATCTCTTGCTCTGCTCCAAGCAGCCTATTACAGGCGACTGAAATGGTCGG 1018
|||||||||| ||||| ||||| |||||||| || || ||||||||||| ||||||||||
Sbjct 959 TATTCCTACTCTCTCTCGCTCTTCTCCAAGCTGCTTACTACAGGCGACTAAAATGGTCGG 1018
Query 1019 TTCTCAAGTCCCGCAAGCTGGTTCTTGACGTGGTTAACTAAAGCGCCGCTCAAAAGCTTT 1078
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1019 TTCTCAAGTCCCGCAAGCTGGTTCTTGACGTGGTTAACTAAAGCGCCGCTGAAAAGCTTT 1078
Query 1079 TGCATTGGCCTGGCCACACACAGTCGTATTTTCAACTATGGATGTTAAATAGAGAAGAGC 1138
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1079 TGCATTGGCCTGGCCACACACAGTCGTATTTTCAACAAAGGATGTTAAATAGAGAAGAGC 1138
Query 1139 CTTTCTCTAGGTAATAACGTATCATCATTTTTATGTGTCATAAAAATCTTTGATGAGACC 1198
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CTTTCTCTGGGTAATAACGTATCATCATTTTTATGTGTCATAAAAATCTTTGATGAGACC 1198
Query 1199 AGTTCTCACCTGACGGGTGAAAAGACCTCATCGTTCTTCTTTTTCCTTCGATTATTACTT 1258
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AGTTCTCACCTGAAGG-TGAAAAGACCTCATCGTTCTTCTTTTTCCTTCGATTATTACT- 1256
Query 1259 AGAGAGTTTTATGAGGATAATCACGAAAACTTGtttttttCGCCTCATAATAATCACACA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AGAGAGTTTTATGAGGATAATCACGAAAACTTGTTTTTTTCGCCTCATAATAATCACACA 1316
Query 1319 TGATTTTGAGATCATATCATTTGTTATGTTTTTTCGCTCGTCTCAATAAAGAATAACTTT 1378
|||||||||||| |||||||||||||||||||| | || ||||||||||| |||||||||
Sbjct 1317 TGATTTTGAGATTATATCATTTGTTATGTTTTTCCTCTTGTCTCAATAAAAAATAACTTT 1376
Query 1379 GTACTCTGATATTTGTGGTCTATTTTCGGCATTTCTTGC 1417
|||||||||| ||||| ||||||||||||||||||||||
Sbjct 1377 GTACTCTGAT-TTTGTTGTCTATTTTCGGCATTTCTTGC 1414
> AT5G40810.1 | Symbols: | Cytochrome C1 family | chr5:16339893-16342644
FORWARD LENGTH=1380
Length=1380
Score = 1168 bits (632), Expect = 0.0
Identities = 872/988 (88%), Gaps = 16/988 (2%)
Strand=Plus/Plus
Query 80 TCGCCGATCTCGTTGCTTCATTTTCCGCGAG-TTGATTGGTACAAAGCGTTAATCAAATG 138
|||||||||||||||||||||||||| ||| | ||||||||| ||| ||| ||| ||||
Sbjct 84 TCGCCGATCTCGTTGCTTCATTTTCCTTGAGATCGATTGGTAC-AAGTGTTCATCCAATG 142
Query 139 GTTGGAGGAGGACTTATCCAGCAAATTCTTAGGAGGAAGCTTCACTCTCAATCAGTTGCA 198
|||||||||||| |||||| ||| ||||||| ||||| ||||| || |||||||| |||
Sbjct 143 GTTGGAGGAGGAGTTATCCGGCAGCTTCTTAGAAGGAAACTTCATTCCCAATCAGTCGCA 202
Query 199 ACTCCGGTTTTGTCTTGGTTTTCTTCGAAGAAAGCTCATGAGGATGCTGGCTCTTCTGGT 258
|||||||| ||||| ||||| |||||||||||||| |||| |||||||| ||| |||||
Sbjct 203 ACTCCGGTATTGTCATGGTTGTCTTCGAAGAAAGCGAATGAAGATGCTGGGTCTGCTGGT 262
Query 259 GTAAGAGCACTTGCCCT-ATTTGGTGCTGGTGTTACTGGACTGTTGAGTTTTTCTACAGT 317
|||||||| |||| || | | ||||||||| |||| ||| | |||||||||||||| ||
Sbjct 263 TTAAGAGCATTTGCTCTCA-TGGGTGCTGGTATTACCGGATTATTGAGTTTTTCTACTGT 321
Query 318 TGCGTCTGCTGATGAAGCTGAACATGGAT-TGGAGTGTCC-AGACTACCCTTGGCCTCAT 375
||| ||||||||||| ||||||||||| | |||||||||| | ||||||||||||| |||
Sbjct 322 TGCATCTGCTGATGAGGCTGAACATGG-TCTGGAGTGTCCTA-ACTACCCTTGGCCACAT 379
Query 376 GATGGCATTCTCAGCTCATATGATCATGCTTCGATCCGTCGTGGACATCAAGTTTATCAG 435
|| |||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 380 GAGGGCATTCTCAGCTCATATGACCATGCTTCGATCCGTCGTGGTCACCAAGTTTATCAG 439
Query 436 CAAGTCTGTGCATCTTGCCATTCAATGTCTCTGATCTCTTACCGAGATTTGGTGGGTGTT 495
||||| ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 440 CAAGTTTGTGCGTCTTGCCATTCGATGTCTCTGATCTCATACCGAGACTTGGTGGGTGTT 499
Query 496 GCCTACACAGAGGAAGAAGCAAAGGCAATGGCAGCTGAAATCGAGGTTGTAGATGGACCT 555
||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||
Sbjct 500 GCCTACACAGAGGAAGAGGCGAAGGCCATGGCAGCTGAAATCGAGGTTGTTGATGGACCA 559
Query 556 AATGATGAGGGTGAGATGTTCACCCGTCCTGGTAAACTCAGTGACCGGTTTCCTGAACCA 615
|||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||
Sbjct 560 AATGATGAGGGTGAGATGTTCACCCGACCTGGTAAACTCAGTGATCGGCTTCCTGAACCA 619
Query 616 TACTCGAATGAATCAGCTGCAAGGTTTGCTAATGGGGGAGCGTATCCTCCTGATCTAAGT 675
||||| |||||||| ||||| ||||| || ||||| ||||||||||| || |||||||||
Sbjct 620 TACTCAAATGAATCGGCTGCTAGGTTCGCCAATGGAGGAGCGTATCCACCGGATCTAAGT 679
Query 676 CTTATAACTAAGGCACGTCACAACGGTCCTAA-TTATGTCTTTGCTCT-TCTGACTGGTT 733
||| ||||||||||||||||||| || || || ||||||||||||||| | |||||||||
Sbjct 680 CTTGTAACTAAGGCACGTCACAATGG-CCAAAATTATGTCTTTGCTCTGT-TGACTGGTT 737
Query 734 ACCGTGATCCGCCTGCTGGCATTTCAATTAGAGAGGGGTTACACTACAATCCTTATTTCC 793
| |||||||| |||||||| ||||| || ||||||||| |||||||||||||||||||||
Sbjct 738 ATCGTGATCCTCCTGCTGGAATTTCGATCAGAGAGGGGCTACACTACAATCCTTATTTCC 797
Query 794 CTGGGGGAGCAATTGCTATGCCGAAGATGCTCAATGATGAAGCTGTTGAGTATGAGGATG 853
|||| |||||||| |||||||| || |||||||| ||||||||||| || ||||| ||||
Sbjct 798 CTGGTGGAGCAATCGCTATGCCAAAAATGCTCAACGATGAAGCTGTGGAATATGAAGATG 857
Query 854 GTG-TCCCCGCCACAGAGGCACAGATGGGTAAAGATATTGTATCATTCTTGGCCTGGGCA 912
| ||| || ||||| |||||||||||||||||| ||||||| |||||| ||||||||
Sbjct 858 GAACTCCT-GCAACAGAAGCACAGATGGGTAAAGATGTTGTATCCTTCTTGTCCTGGGCA 916
Query 913 GCTGAACCAGAAATGGAAGAGAGGAAATTGATGGGTTTCAAATGGATATTCCTACTATCT 972
||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| |||
Sbjct 917 GCTGAACCAGAGATGGAAGAGAGGAAATTGATGGGGTTCAAATGGATATTCTTACTGTCT 976
Query 973 CTTG-CTCTGCTCCAAGCAGCCTATTACAGGCGACTGAAATGGTCGGTTCTCAAGTCCCG 1031
||| ||||||| ||||| || ||||||||| ||||||||||||| || ||||| |||||
Sbjct 977 -TTGGCTCTGCTTCAAGCTGCGTATTACAGGAGACTGAAATGGTCAGTACTCAAATCCCG 1035
Query 1032 CAAGCTGGTTCTTGACGTGGTTAACTAA 1059
||||| ||||| ||||| |||||||||
Sbjct 1036 TAAGCTTGTTCTCGACGTTGTTAACTAA 1063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69828958095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5