BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484507
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27250.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1531 0.0
> AT3G27250.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G40800.1);
Has 104 Blast hits to 104 proteins in 13 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:10061545-10062731
FORWARD LENGTH=1187
Length=1187
Score = 1531 bits (829), Expect = 0.0
Identities = 1081/1193 (91%), Gaps = 56/1193 (5%)
Strand=Plus/Plus
Query 1 AGACACACagaaagactatagagaaagagagagaaagaaagaaagaaaagagtgagagag 60
||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 1 AGACACACAGAAAGACTATAGAGAAAGAGAGAGAAAGAAAGAAAGAAAA-A--GAGTGAG 57
Query 61 agtgtttgat-a-agagagagaaagat-aaaaaTGGATCAAGATGAGTGGTTGGGAACGC 117
|||||||||| | | |||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 58 AGTGTTTGATGATA-AGAGAGAAAGATAAAAAATGGATCAAGATGACTGGTTGGGAACGC 116
Query 118 TAAGATA---C------GCGCAGGATAAAGTTTCCGTCGACGCTCTCATGCTCCGGTACC 168
||||||| | |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 117 TAAGATACGCCGGTAAGGCGCAGGATAAAGTTTCCGTTGACGCTCTCATGCTCCGGTACC 176
Query 169 GTCCCATCGCTCCGAAGCCGACGACTGGTCAGTCATGTGGTGTAGG-AGATAACAACAAC 227
|||| |||||||| |||||||||||||||||| |||||||||| || |||||||||||||
Sbjct 177 GTCCGATCGCTCCAAAGCCGACGACTGGTCAGCCATGTGGTGT-GGCAGATAACAACAAC 235
Query 228 AACAACTTATACGGTATGAGCAAACGAACCAAACGAAAGTACGTTAGGGTTTCGAAGAAT 287
|| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 AATAGCTCATACGGTATGAGCAAACGAACCAAACGAAAGTACGTTAGGGTTTCGAAGAAT 295
Query 288 AATAAAGGCACGTGTCGAGGTAAGAGCAGATCTGACTTGTCTGATGATCGGGAACAAACT 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AATAAAGGCACGTGTCGAGGTAAGAGCAGATCTGACTTGTCTGATGATCGGGAACAAACT 355
Query 348 GAAGTCGTGACGTTGCAACTCTTGCCGGAAAAATCAGATATTTCCGGTGAGTACTCGCCG 407
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GATGTCGTGACGTTGCAACTCTTGCCGGAAAAATCAGATATTTCCGGTGAGTACTCGCCG 415
Query 408 TTGGATCAGGATAGTCTCGATCCATCGGTGAAAACGATAATCGGAGAGGAAACACAAGAA 467
|||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 416 TTGGATCAAGATAGTCTCGATCCGTCGGTGAAATCGATAATCGGAGAGGAAACACAAGAA 475
Query 468 ACCAACATGTGGGGTACGTTTAACGGCGGCGTCACGGCGGATATGGAGACGTGGGTTACG 527
||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||| |||
Sbjct 476 ACCAACACGTGGGGTATGTTTAACGGCAGCGTCACGGCGGAGATGGAGACGTGGGTGACG 535
Query 528 GTGGAGTCTGTCACAAGTGTTTGTGATGGTATTTTGAGTTCCCATGCGGTGGGGTTTACG 587
|||||||| |||||||| || ||||| |||| |||||||||||||||||||||| |||||
Sbjct 536 GTGGAGTCCGTCACAAGCGTGTGTGAGGGTAGTTTGAGTTCCCATGCGGTGGGGATTACG 595
Query 588 GACGTTGAGATCGTTGATAATCTTGGTAAGGACACGTGTCCAGCGTTCGTATCGGATGGT 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GACGTTGAGATCGTTGATAATCTTGGTAAGGACACGTGTCCAGCGTTCGTATCGGATGGC 655
Query 648 TCGAACCGTGTGGTGTGGGTCAACGAGGCTTACCGGAGGAATGTTTCCGGTGATGATTCA 707
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 656 TCGAACCGTGTGGTGTGGGTCAACGAGGCTTACCGGAGAAATGTTTCCGGTGATGATTCA 715
Query 708 ACGTCG---GTGTCCCCGGATGTCGTGGTGTGGTTGGTGGCGGAGGAGGCAACGGCGGCG 764
||| || || || ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 716 ACGGCGTCAGTATCGCCGGAAGTTGTGGTGTGGTTGGTGGCGGAGGAGGCAACGGCGGCG 775
Query 765 ATGCATTGTAACTACCAAGCTTTCACGTGTAGGGTGAGGATGCAATACACGTGGAAGGAA 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 ATGCATTGTAACTACCAAGCTTTCACGTGTAGGGTGAGGATGCAATACACGTGGAAGGAA 835
Query 825 ACAAAGTATACAAAAACGGTGCCGTGTGATGTGTGGAAAATGGAGTTTGGTGGCTTTGCA 884
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 836 ACAAAGTATACCAAAACGGTGCCGTGTGATGTGTGGAAAATGGAGTTTGGTGGTTTTGCA 895
Query 885 TGGAGGCTAGACACAACAACTGCTCTGACTCTCTGGCTTTGATGGTGATTGCTGCGAG-A 943
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
Sbjct 896 TGGAGGCTAGACACAACAGCTGCTCTGACTCTCTGGCTTTGATGGTGATTGCTGCAAGTA 955
Query 944 CACATGAGGGTAAGATTACCAAGCTATGTGATTTTAGAGTGTGTCTAATG-CAACTTT-G 1001
||||| |||||||||| ||| ||||||||||||| ||||| ||||| ||| || |
Sbjct 956 -ACATGCGGGTAAGATTGTTAAGATATGTGATTTTAGTGTGTGACTAATCACAAAATTAG 1014
Query 1002 T--T---T--A-G---A-CT------AG-----TAAGAAGGAAACAAATGATGCTAATGT 1038
| | | | | | || || |||||||||| ||||||||||||||||
Sbjct 1015 TAATCGCTTCAAGCGCAACTTTGTTTAGACGAGTAAGAAGGAAGCAAATGATGCTAATGT 1074
Query 1039 TGGAAGAAGTATGGAAAAGCTGGAAAGCTTAAATATATAC--C-----GTAATAATGTCA 1091
|| ||||||| |||| ||| |||||||||||||||||| | ||||||||||||
Sbjct 1075 TGAAAGAAGTGTGGAGGAGCCGGAAAGCTTAAATATATAGAACATATAGTAATAATGTCA 1134
Query 1092 TATATTTATTGGCAAAGACTAAATAAAAG-ATGCCATTGTATGGTTTCGTACC 1143
||| ||||||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct 1135 TATTTTTATTGGCAAAGACTAAACAAAAATATGCCATTGTATGGTTTCATACC 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5