BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484510
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27280.2 | Symbols: ATPHB4, PHB4 | prohibitin 4 | chr3:10076... 1399 0.0
AT5G40770.1 | Symbols: ATPHB3, PHB3 | prohibitin 3 | chr5:16314... 780 0.0
> AT3G27280.2 | Symbols: ATPHB4, PHB4 | prohibitin 4 | chr3:10076819-10078421
FORWARD LENGTH=1295
Length=1295
Score = 1399 bits (757), Expect = 0.0
Identities = 827/862 (96%), Gaps = 0/862 (0%)
Strand=Plus/Plus
Query 35 aaaaaaaaaTGGGAATTCAACAAGCAGCGATTTCGCTCCTGACGAACTTGGCGAAGGCGG 94
|||| |||||||||| |||||||| |||||||||| | ||||||||||||||||||||||
Sbjct 78 AAAAGAAAATGGGAAGTCAACAAGTAGCGATTTCGTTTCTGACGAACTTGGCGAAGGCGG 137
Query 95 CGTTTGGTTTAGGTGTGGCGGCGACGGCACTGAACTCGTCACTCTACACTGTTGATGGTG 154
||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 138 CGTTTGGGTTAGGTGTGGCGGCGACGGCACTAAACTCGTCGCTCTACACTGTTGATGGTG 197
Query 155 GCGAGAGAGCTGTGTTGTTCGATCGATTCAGGGGAGTGTTGGATCAGACTGTCGGCGAAG 214
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 198 GCGAGAGAGCTGTTTTGTTCGATCGATTCAGGGGAGTGTTGGATCAGACCGTCGGCGAAG 257
Query 215 GGACTCATTTCTTGATCCCGTATCTCCAGACACCTCACATCTACGATATTCGTACGAAAC 274
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 258 GGACTCATTTCTTGATCCCGTATCTCCAGACGCCGCACATATACGATATTCGTACGAAAC 317
Query 275 CTCACACTTTCTCCTCCAAATCTGGTACTAAGGATCTTCAGATGGTTAATCTCACCCTTC 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 CTCACACTTTCTCCTCCAAATCTGGTACTAAGGATCTTCAGATGGTTAATCTCACCCTTC 377
Query 335 GTGTTCTCTTTCGCCCTGAGGTTTCGCGTCTCCCGAAGATTTACCAAACATTGGGTCTAG 394
||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||| |
Sbjct 378 GTGTTCTCTTTCGCCCTGAGGTTTCGCGTCTCCCGTACATTTTCCAAACATTGGGTCTTG 437
Query 395 AATACGATGAGAAAGTTCTTCCCTCAATTGGAAATGAGGTATTGAAAGCTGTGGTTGCTA 454
||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 438 AATACGATGAGAAGGTTCTTCCATCGATTGGAAATGAGGTCTTGAAAGCTGTGGTTGCTA 497
Query 455 CTTTCAATGCTGATCAGCTCCTCACTGAGCGTCCTCAAGTATCAGCACTTGTTCGTGATG 514
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 ATTTCAATGCTGATCAGCTCCTCACTGAGCGTCCTCAAGTATCAGCACTTGTTCGTGATG 557
Query 515 CTCTTATCAAGCGTGCCAGGGAATTCGGCATTGAGCTCGACGACATAGCTATTACTCACT 574
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 558 CTCTTATCAAGCGTGCCAGGGAATTTAACATTGAGCTCGACGACATAGCCATTACTCACT 617
Query 575 TATCATACGGTGCTGAGTTCTCGAGGGCAGTTGAGGCGAAGCAAGTGGCTCAGCAGGAAG 634
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 618 TATCGTACGGTGCTGAGTTCTCGAGGGCAGTGGAGGCGAAGCAAGTGGCTCAGCAGGAAG 677
Query 635 CTGAAAGGTCAAAGTTTGTGGTGATGAAAGCTGATCAAGAGAGGAGAGCTGCGGTTATAA 694
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 678 CTGAAAGGTCAAAGTTTGTGGTGATGAAGGCTGATCAAGAGAGGAGAGCTGCGGTTATAA 737
Query 695 GAGCAGAAGGTGAGAGTGAAGCTGCTCAGTTGATTTCAGATGCAACAGCTAAAGCAGGAA 754
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 738 GAGCAGAAGGTGAGAGTGAAGCTGCTCAGTTGATATCAGATGCAACAGCTAAAGCAGGAA 797
Query 755 TGGGACTAATTGAGCTTAGGAGGATTGAAGCTTCAAGGGAGGTTGCAGCTACTCTGGCTA 814
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 798 TGGGACTAATTGAGCTTAGGAGGATTGAAGCTTCAAGGGAGGTTGCGGCTACTCTGGCTA 857
Query 815 GGTCTCCGAACGTGGCTTATTTACCTGGTGGACAAAGCATGCTCTTTTCTCTGAACCCTG 874
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 858 GGTCTCCGAACGTGGCTTACTTACCTGGTGGACAAAGCATGCTCTTTAATCTGAACCCTG 917
Query 875 GTCGTTGAGCCATAACATTGGT 896
|||||||||| |||||||||||
Sbjct 918 GTCGTTGAGCTATAACATTGGT 939
> AT5G40770.1 | Symbols: ATPHB3, PHB3 | prohibitin 3 | chr5:16314850-16316719
REVERSE LENGTH=1589
Length=1589
Score = 780 bits (422), Expect = 0.0
Identities = 709/846 (84%), Gaps = 26/846 (3%)
Strand=Plus/Plus
Query 39 aaaaaTGGGAATTCAACAAGCAGC-GATTTCGCTCCTGACGAACTTGGCGAAGGCGGCGT 97
||||||||||| |||||||| || | ||||| |||| | || ||||||||||| || |
Sbjct 95 AAAAATGGGAAGCCAACAAGCGGCTG-TTTCGTTCCTTTCCAATTTGGCGAAGGCTGC-T 152
Query 98 TT-GGT-TTAGGTGTGGCGGCGACGGCACTGAACT-CGTCACTCTACACTGTTGATGGTG 154
|| ||| || || ||||||||||| ||||| | | || || | ||| ||||| || |
Sbjct 153 TTCGGTCTT-GGAACGGCGGCGACGGTGCTGAA-TACATCGCTTTTCACCGTTGACGGCG 210
Query 155 GCGAGAGAGCTGTGT-TGTTCGATCGATTCAGGGGAGTGTTGGATCAGACTGTCGGCGAA 213
| || |||||||| | | ||||||||||||||||||||| ||||||||||||| || |||
Sbjct 211 GAGAAAGAGCTGT-TATCTTCGATCGATTCAGGGGAGTGATGGATCAGACTGTGGGTGAA 269
Query 214 GGGACTCATTTCTTGATCCCGTA-TCTCCAGACACCTCACATCTACGATATTCGTACGAA 272
||||||||||||||||||||| | ||| |||| |||||||||| |||||| || |||||
Sbjct 270 GGGACTCATTTCTTGATCCCG-ATTCTTCAGAGGCCTCACATCTTCGATATCCGCACGAA 328
Query 273 ACCTCACACTTTCTCCTCCAA-ATCTGGTACTAAGGATCTTCAGATGGTTAATCTCACCC 331
|||||||| |||| || ||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 329 GCCTCACACGTTCT-CTTCAATCTCTGGTACTAAGGATCTCCAGATGGTTAATCTCACTC 387
Query 332 TTCGTGTTCTCTTTCGCCCTGAGGTTTCGCGTCTCCCGAAGAT-TTACCAAACATTGGGT 390
|||||||||||| ||| |||||||| |||||||||||| | || || |||||| ||||||
Sbjct 388 TTCGTGTTCTCTCTCGTCCTGAGGTGTCGCGTCTCCCGTACATCTT-CCAAACTTTGGGT 446
Query 391 CTAGAATACGATGAGAAAGTTCTTCCCTCAATTGGAAATGAGGTATTGAAAGCTGTGGTT 450
||||| || || ||||| |||||||| || |||||||||||||| |||||||||||||||
Sbjct 447 CTAGAGTATGACGAGAAGGTTCTTCCTTCGATTGGAAATGAGGTTTTGAAAGCTGTGGTT 506
Query 451 GCTAC-TTTCAATGCTGATCAGCTCCTCACTGAGCGTCCTCAAGTATCAGCACTTGTTCG 509
|| || ||||| ||||| ||||| ||||||||||||||||| || ||||||||||||||
Sbjct 507 GC-ACAGTTCAACGCTGACCAGCTTCTCACTGAGCGTCCTCACGTCTCAGCACTTGTTCG 565
Query 510 TGATG-CTCTTATCAAGCGTGCCAGGGAATTCGGCATTGAGCTCGACGACATAGCTATTA 568
|| | | || |||| ||||| | ||| ||| ||||| ||| || || ||||||| |
Sbjct 566 GGA-GTCACTAATCACCCGTGCGAAGGACTTCAACATTGTGCTTGATGATGTAGCTATCA 624
Query 569 CTCACTTATCATACGGTGCT-GAGTTCTCGAGGGCAGTTGAGGC-GAAGCAAGTGGCTCA 626
| || || || || |||| | ||||| || ||||| ||||| || ||| |||||||||||
Sbjct 625 CGCATTTGTCCTATGGTG-TGGAGTTTTCAAGGGCTGTTGA-GCAGAAACAAGTGGCTCA 682
Query 627 GCAGGAAGCTGAAAGGTCAAAGTTTGTGGTGATGAAAGCTGATCAAGAGAGGAGAGCTGC 686
||| || || || ||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 683 GCAAGAGGCAGAGAGGTCTAAGTTTGTTGTGATGAAGGCTGATCAAGAGAGGAGAGCTGC 742
Query 687 GGTTATAAGAGCAGAAGGTGAGAGTGAAGCTGCTCAGTTGATTTCAGATGCAACAGCTAA 746
|||||||||||| |||||||| ||||||||||||||||||||||| ||||| || |||||
Sbjct 743 GGTTATAAGAGCTGAAGGTGAAAGTGAAGCTGCTCAGTTGATTTCTGATGCTACGGCTAA 802
Query 747 AGCAGGAATGGGACTAATTGAGCTTAGGAGGATTGAAGCTTCAAGGGAGGTTGCAG-CTA 805
||| || |||||||| || |||||||||||||||||||||||||||||| |||| | |||
Sbjct 803 AGCTGGTATGGGACTTATCGAGCTTAGGAGGATTGAAGCTTCAAGGGAGATTGC-GTCTA 861
Query 806 CTCTGGCTAGGTCTCCGAACGTGGCTTATTTACCTGGTGGACAAAGCATGCTCTTTTCTC 865
| || ||||||||||| || ||||| || ||||| ||||| || |||||||||||| | |
Sbjct 862 CACTTGCTAGGTCTCCTAATGTGGCCTACTTACCCGGTGGCCAGAGCATGCTCTTTGCCC 921
Query 866 TGAACC 871
||||||
Sbjct 922 TGAACC 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5