BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484511
Length=1776
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27290.1 | Symbols: | RNI-like superfamily protein | chr3:1... 1879 0.0
> AT3G27290.1 | Symbols: | RNI-like superfamily protein | chr3:10079560-10081533
REVERSE LENGTH=1895
Length=1895
Score = 1879 bits (1017), Expect = 0.0
Identities = 1560/1800 (87%), Gaps = 125/1800 (7%)
Strand=Plus/Plus
Query 64 TCTTCTTCTTCCTCTCGAATCCTTTCTCTTTCCTATTTTTTATTTTCCCGCTGATTTCGC 123
||||| ||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct 98 TCTTCCTCTTCCTCTCGAATCCTTTCTCTTTCC-------T-TTTTCCCGCTGATTACGC 149
Query 124 GAT--C---CCAT-TCGTTC--TCATTCATTCATTCATTCTCTCGCCGtttttttttta- 174
||| | || | || ||| |||||||||||||||||||||||||| ||||||| ||
Sbjct 150 GATCCCGTTCCTTCTCATTCATTCATTCATTCATTCATTCTCTCGCCG-TTTTTTTATAT 208
Query 175 atctatttca---ga----tttcag-tttctttttttc-TCA-GC-TT---A-ATTCGTT 219
|| ||||||| || |||||| |||| ||| | | | | || | |||||||
Sbjct 209 ATTTATTTCATTGGATCTGTTTCAGATTTC-GATTTCCTTAATTCATTGAGAGATTCGTT 267
Query 220 AATGGAGGTTAATTCCG-ACGAGCTTCGAGGTTCTTATGCTTCTTGTGGTATCGATTACC 278
|||||||||||||| || | | ||||||||||||||| || |||||||
Sbjct 268 AATGGAGGTTAATTACGAAAG-GCTTCGAGGTTCTTA------------TAACGATTACA 314
Query 279 GAAAAGTAGAATTGGGTTTTTGTGAATTTGGGGATGATTTTGTGGGTTTGCCTGATGATC 338
||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 315 GAAAATTAGAATTGGGTTTAGGCGAATTTGGGGATGATTTTGTGGGTTTGCCTGATGATC 374
Query 339 CTTTTTGTATGAACATTAGATCCACTTTGAATACAATCTCTGATTGGTTTCATGAGAATC 398
|||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||
Sbjct 375 CTTTTTGTATGAACATTAGATCGACTTTGAATTCAATCTCAGATTGGTTTCATGAGAATC 434
Query 399 AGA-T-G-TT-G-CAACACCAA-ATC--ACTTTGCCTGAGGATCCATTTTGTATGAAAGT 450
||| | | || | | || || ||| ||||||||||||||||| |||||||||| |||
Sbjct 435 AGATTGGTTTAGTC-TCA-GAAGATCATACTTTGCCTGAGGATCCGTTTTGTATGAGAGT 492
Query 451 TAGATCGACTTTGAACACAATCTCGGATTGGTTTCATGAGAATCACAAAG--ATT--TAG 506
|||||||||||||||||||||||| |||||||||||||||||||| |||| ||| | |
Sbjct 493 TAGATCGACTTTGAACACAATCTCTGATTGGTTTCATGAGAATCAGAAAGAAATTGGT-G 551
Query 507 TAACTGAACA-A---T-TT--AG-CT-TAAGTTGGtttgatcttgatgatgtttttgatg 557
| ||| || | | || || || ||||||||||| || | |||||| |||||
Sbjct 552 TTGTTGATCAGATGTTGTTCGAGACTCTAAGTTGGTTTTATAATAATGATG---ATGATG 608
Query 558 atgatgatgatgatgatgatgatgatgatgCTGGTGAAGCTCATGACGCGTTTGAGTTAG 617
||| ||||||||||||||||| || || || ||||||||||||||||||||||||||| |
Sbjct 609 ATGGTGATGATGATGATGATGGTGGTGGTGGTGGTGAAGCTCATGACGCGTTTGAGTTGG 668
Query 618 TTCTGT-CATATCTAGAGGTGAAAGAGATTCTTGCGGTTGAAGGAGTTTGCAGGTCTTTG 676
|||| | ||||||||||| |||||||||||||||||||||||| |||||| |||||||||
Sbjct 669 TTCT-TCCATATCTAGAGTTGAAAGAGATTCTTGCGGTTGAAGTAGTTTGTAGGTCTTTG 727
Query 677 CGTGATTCGGTTAGAAAGGAGCCTTTCTTCTGGAGAACCATTGATCTTAATGACTCTTTT 736
|||||||||||| ||||||| ||||| ||||||| || ||||||||||||||||| |||
Sbjct 728 CGTGATTCGGTTGGAAAGGAACCTTTTTTCTGGACAAGTATTGATCTTAATGACTCATTT 787
Query 737 CTTCAATATAGAGTAACTGATGAGTCTCTTTTGAAGTTAACACGCCGCGCTCAAGGTGAT 796
|||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| | |
Sbjct 788 CTTCAATATAGAGTTACTGATGAGTCTCTTTTGAAGTTAACACGCCGTGCTCTAGGCGGT 847
Query 797 GTTCGATGTTTGAATCTTGGAGGATGTGTTGGTATCACTGATTATGGCTTGAAGCAAGTG 856
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 GTTCGATGTTTGAATCTTGGAGGATGTGTTGGTATCACTGATTATGGCTTGAAGCAAGTT 907
Query 857 CTTGCAATCAATCCACATCTCACTAAGCTGAGTGTATCTGGTTGTCTTAGACTAAGCACA 916
||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 908 CTTGCTAGCAATCCACATCTTACTAAGCTGAGTGTATCTGGTTGTCTTAGACTAAGCACA 967
Query 917 GCAGGACTACTGTCAACTCTAAGGGACTTAAAATCCTCAAATCGTCTTGGAGTCAAAAGC 976
||||||||| |||||||| |||||||||||||||| ||||| ||||||||||||||||||
Sbjct 968 GCAGGACTAGTGTCAACTTTAAGGGACTTAAAATCTTCAAACCGTCTTGGAGTCAAAAGC 1027
Query 977 CTAATCACTGGTGGGGCGTTATATTTCACAAAGGAGCAATTTAAAGAGCTCAACTTATTA 1036
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1028 CTAATCACTGGTGGGGCGTTGTATTTCACAAAGGAGCAGTTTAAAGAGCTCAACTTATTG 1087
Query 1037 CTGGGAGGAGATGCTAAAGCGGGTCCAAAATCGAGGAAGAAGAGATTCTATACGTCTTGT 1096
|| |||||||||||||||| |||| | || ||||||||||||||||||||||||||||
Sbjct 1088 CTAGGAGGAGATGCTAAAGTGGGTTTACAAGAGAGGAAGAAGAGATTCTATACGTCTTGT 1147
Query 1097 AGATCAGAGTTTTCTTTAGAGGATGATCGAGTTACTGACCTAGAGATATGCCCGTGGTGT 1156
|||||||| || | ||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1148 AGATCAGAATTCTATTTAGAGGATGATCGAGTTACTGACCTCGAGATATGCCCCTGGTGT 1207
Query 1157 GAGAAACCAAGTCTTGTATTTGATTGTCCAGCAGAAACCTGTCCGTTGAAGGGTCAATAT 1216
|||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 1208 GAGAAACCAAGTCTGGTATTTGATTGTCCAGCAGATACATGTCCATTGAAGGGTCAATAT 1267
Query 1217 CCTTATCCTAAATCATCGTGCAGAGCTTGCGTAGTCTGCATAGAACGTTGCCACGAGTGT 1276
|||||| |||| ||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1268 CCTTATTCTAAGTCATCTTGCAGAGCTTGCGTTGTCTGCATAGAACGTTGCCATGAGTGT 1327
Query 1277 GGGAGTTGCTTAAACGACTGTGAAAACAAGCCGTTCTGTTTTGCATTCAGCTGTGTGGTC 1336
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 GGGAGTTGCTTAAATGACTGTGAAAACAAGCCGTTCTGTTTTGCATTCAGCTGTGTGGTA 1387
Query 1337 TGCATTGAGAAGAGGTCTAACCAG-TTATAAGAGTTTATTTGAAGTCAAAACCGAAGCT- 1394
|||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||
Sbjct 1388 TGCATTGAGAAGAGGTCTAACC-GCTTATAATAGTTTATTTGAAGTCAAAACCGAAGCTT 1446
Query 1395 AACACATGAATTTGATCCTCAAAACACTGTTTTCAGAAGATGAAGAATGAAGAGTCTTGA 1454
||||||| | |||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1447 AACACATTACTTTGATCCTCAATACACTGTTTTC------TGAAGAATGAAGAGTCTTGG 1500
Query 1455 TGCTTGAGGTATCAATCA-AAGTCAATGAGAAGAGCTGCAACAGAAAA-GGAAACATGAT 1512
||||||||||||||| | |||||||| ||||||||||||||| |||| |||||||||||
Sbjct 1501 TGCTTGAGGTATCAAACCTAAGTCAATAAGAAGAGCTGCAACAAAAAATGGAAACATGAT 1560
Query 1513 AAGACTCAGAAGGGTGTTTAGTCTTCATCTACTGCATCATGAAAGATCTGCGCCAA-CTA 1571
|||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||
Sbjct 1561 AAGACTCAGAAGGGTGTTTAGTCTTCATCTACAGCATCATGAAAGATCTGAGCTAAACTT 1620
Query 1572 GATTCTGCAAGGG-CGCG-G--A-----GA----GAGA-A--A-GAGAAGCAAAGACTAG 1614
|||||||||| || | || | | || |||| | | ||||||||||||||||
Sbjct 1621 GATTCTGCAACGGACTCGAGTCAAACTTGATCATGAGAGATGAAGAGAAGCAAAGACTAG 1680
Query 1615 AGCTTTACTTGAAAGTTGAAGCAGCAGGATTCAAATGGGAAATAAGTAGAACTTACAGGA 1674
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1681 AGCTTTACTTGAAAGTTGAAGCACCAGGATTCAAATGGGAAATAAGTAGAACTTACAAGA 1740
Query 1675 AAAGAGAAGAGA-TATT---T-TA-CA---TTAT----CATT-T-A--A-TTAGTCTTCT 1716
|||||||||||| || | || || |||| |||| | | | |||||||| |
Sbjct 1741 AAAGAGAAGAGAATAAAGAATATATCAGAGTTATTTTACATTATCATTAATTAGTCTTTT 1800
Query 1717 AATCTCCTCCTTATATAGCTTTATGTTAAATGACTTGTTTAATTTTCAAAATGGATCAAT 1776
|||||||||| ||| ||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1801 AATCTCCTCCATATGTAGCTTT-TGTTAAATGACTTGTATAATTTTCAAAATGGATCAAT 1859
Score = 104 bits (56), Expect = 3e-21
Identities = 71/78 (91%), Gaps = 2/78 (3%)
Strand=Plus/Plus
Query 325 TTTGCCTGATGATCCTTTTTGTATGAACA-TTAGATCCACTTTGAATACAATCTCTGATT 383
||||||||| ||||| ||||||||| | | ||||||| |||||||| |||||||||||||
Sbjct 463 TTTGCCTGAGGATCCGTTTTGTATG-AGAGTTAGATCGACTTTGAACACAATCTCTGATT 521
Query 384 GGTTTCATGAGAATCAGA 401
||||||||||||||||||
Sbjct 522 GGTTTCATGAGAATCAGA 539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87850953750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5