BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484521
Length=2881
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27330.1 | Symbols: | zinc finger (C3HC4-type RING finger) ... 4209 0.0
AT5G40720.1 | Symbols: | Domain of unknown function (DUF23) | ... 931 0.0
> AT3G27330.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr3:10116950-10120645 REVERSE LENGTH=2871
Length=2871
Score = 4209 bits (2279), Expect = 0.0
Identities = 2697/2896 (93%), Gaps = 40/2896 (1%)
Strand=Plus/Plus
Query 1 ACTCTTATCATCATCC-AAA-CAGAAACTTTGACTGGAAAAGAATTAGAGAAGT--TG-A 55
|||||| ||||||||| ||| ||||||||||||| |||||||||| |||||||| | |
Sbjct 1 ACTCTTCTCATCATCCAAAACCAGAAACTTTGACCGGAAAAGAATCAGAGAAGTAAAGAA 60
Query 56 AAA-AGAA-AAATCTTTACTTTTTCTTTTGTTGTTACTGAAACTAAAACGCCGGCGATTT 113
||| |||| ||| ||| ||| || | || || | | |||||||||||||
Sbjct 61 AAACAGAACAAA--ATTAAAACAGAATTTCTT-CT-CT-AATCCATTACGCCGGCGATTT 115
Query 114 CGGCGGCGTAGGAGATGAAGGTTCGTAGAAAACTTGGTGGTGGTTGCGGCGGAGACGTCG 173
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 116 CGGCGGCGTAGGAGATGAAAGTTCGTAGGAAACTTGGTGGTGGTTGCGGCGGAGACGTCG 175
Query 174 TTGTTTCATGGCGGACGTTCTTTTGGTTCGTGATTCTGTTTGTCTTCTCCTTCGTTCTCT 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TTGTTTCATGGCGGACGTTCTTTTGGTTCGTGATTCTGTTTGTCTTCTCCTTCGTTCTCT 235
Query 234 TCTCCACCATGTTTATCTTTAAAGGGAAGTTTCGTCCGGTGGTTCGTTCGACGATAAGCT 293
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 236 TCTCCACCATGTTTATTTTTAAGGGGAAGTTTCGTCCGGTGGTTCGTTCGACGATAAGCT 295
Query 294 TCTCAACGGCTGTTACGGCGAGGGCGGTTCTCGGCGAGTCTATATCGTCTTCCCCGGCGG 353
||||||||||||||||||| ||||||||| || | ||||||||||||||||| |||||||
Sbjct 296 TCTCAACGGCTGTTACGGCAAGGGCGGTTTTCCGTGAGTCTATATCGTCTTCTCCGGCGG 355
Query 354 TTACGATTCGTGAAGCGGTGAAATTACCTGAACAAACGT-TGGTTTTCCTAAAATACCCT 412
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 356 TTACGATTCGTGAAGCGGTGAAATTACCTGAACAAAC-TCTGGTTTTCCTAAAATACCCT 414
Query 413 CAGTCTCTTCGGTTATTTACAAAAGACGATCTCATTTGCGTTTACTCCGGTTCGTCGAAG 472
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 415 CAGTCTCGTCGGTTATTTACAAAAGACGATCTCATTTGCGTTTTCTCCGGTTCGTCGAAG 474
Query 473 CTACGGAAAGTGTATCCGACGGCTGTTAACAGAGACAAATTCGGAGGTCAGATCGTACGG 532
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 475 CTACGGAAAGTGTATCCGACGGCTGTGGACAGAGACAAATTTGGAGGTCAGATCGTACGG 534
Query 533 TGTCCTGAAACGCCACGTGGCTACACCATATCGCTTGCTGTTTCGAGATGGACGACGGAT 592
|||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 535 TGTCCTGAGACGCCACGTGGCTACACCATTTCGCTTGCCGTTTCGAGATGGACGACCGAT 594
Query 593 GATCATCTCCCGGCTGGGCCAACTCACCGGTGGGATTGGCTTTTTTACGACGCCGTGATC 652
||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||
Sbjct 595 GATCATCTCCCGGCTGGACCAACTCACCGGTATGATTGGCTGGTTTACGACGCCGTGATC 654
Query 653 GACTACGATAACTCTACGGTGGTTTTTGTCAAGGGGCTTAATCTACGGCCAGGAAGAGTT 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GACTACGATAACTCTACGGTGGTTTTTGTCAAGGGGCTTAATCTACGGCCAGGAAGAGTT 714
Query 713 GCTGACGTGTCGAGATATGAGTGCGTGTACGGCTGGGATTTCGCGAAACATAATCGGTTA 772
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 715 GCTGACGTGTCGAGATATGAGTGCGTGTACGGTTGGGATTTCGCGAAACATAATCGGTTA 774
Query 773 ATTAGATCAGATGTTATCTCAGCGGCTCAGGAGATAGTACGGTGTCGAACACCGTTAGCT 832
|| ||||||||||| ||| | |||||||||||||| ||||||||| ||||||||||||||
Sbjct 775 ATAAGATCAGATGTCATCACTGCGGCTCAGGAGATCGTACGGTGTAGAACACCGTTAGCT 834
Query 833 GTGTTAGACGGCCCAAAAGCGGCCCGTGGGCCTGTTAAAGTCTCGGTTAGAATTAAAGGA 892
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 835 GTGTTAGACGGCCCAAAAGCGGCCCGTGGGCCTGTTAAAGTCTCGGTTAGAATCAAAGGA 894
Query 893 GGAACCGGTATGCTTCCTTCTATCGCTCAACCGGTTCGGATCATTAACCCGCCGCGAAAG 952
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 895 GGAACCGGAATGCTTCCTTCTATCGCTCAGCCGGTTCGGATCATTAACCCGCCGCGAAAG 954
Query 953 AAACCGTTTCAAATGTGCGTTTGCACTATGACGCGAAACGCAGCCGCGGTTTTGAGAGAG 1012
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 955 AAACCCTTTCAAATGTGCGTTTGCACCATGACCCGAAACGCAGCCGCGGTTTTGAGAGAG 1014
Query 1013 TGGGTGATGTATCACGCCGGAATCGGCGTTCAACGGTGGTTCATATACGATAACAACAGC 1072
||||||||||||||||||||||| |||||||||||||||||||| || || |||||||||
Sbjct 1015 TGGGTGATGTATCACGCCGGAATTGGCGTTCAACGGTGGTTCATCTATGACAACAACAGC 1074
Query 1073 GATGACGACATAATCGCCGAGATCGAGAATCTCGAAAGACGCGGTTACAATATCTCGAGA 1132
|| ||||| || ||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 1075 GACGACGATATCATCGCCGAGATCGAGAATCTCGAAAGACGTGGTTACAACATCTCTAGA 1134
Query 1133 CATTTCTGGCCGTGGATTAAAACTCAAGAAGCTGGATTCTCTAATTGTGCGATTCGTGCA 1192
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||
Sbjct 1135 CATTTCTGGCCGTGGATTAAAACTCAGGAAGCCGGATTCTCTAATTGCGCGATCCGTGCA 1194
Query 1193 AAGAGCGATTGCGATTGGATCGCGTTTATTGACGTCGACGAGTTCTTCTACATCCCCTCC 1252
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 1195 AAGAGCGATTGCGATTGGATTGCGTTTATCGACGTCGACGAGTTCTTCTACATCCCATCC 1254
Query 1253 GGTGAATCCCTAACTTCCGTCATAAAAAATTACACTAGCTCCGATTCGATTGGTGAAATT 1312
|||||| | |||||||||||||| | ||||||||| | | |||| || || |||||||||
Sbjct 1255 GGTGAAACTCTAACTTCCGTCATCAGAAATTACACAACCACCGACTCAATCGGTGAAATT 1314
Query 1313 CGAACGCCGTGCCATAGTTTTGGACCGTCGGGTTTGAGATCTCGACCACG-AGATGGAGT 1371
||||| || ||||| ||||| || || ||||||||||||||||| || || || ||||||
Sbjct 1315 CGAACACCTTGCCACAGTTTCGGGCCATCGGGTTTGAGATCTCGGCCTCGGAG-TGGAGT 1373
Query 1372 CACCG-CGGGATACACTTGCCGTGTGGTGTTACCGGAGAGACACAAGAGCATAATCCGGC 1430
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 CAC-GTCGGGATACACTTGCCGTGTGGTGTTACCGGAGAGACACAAGAGCATAATCCGGC 1432
Query 1431 CGGAAGCGATGAACGCGACGCTGATTAACGTGGTTCACCATTTTCACCTCAGAGATGGAT 1490
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1433 CGGAAGCGATGAACGCGACGCTGATAAACGTTGTTCACCATTTTCACCTCAGAGATGGAT 1492
Query 1491 TCACGTTTGCTGACATGGACAAGGATATAATGGTAATTAACCATTACAAATATCAAGTTT 1550
||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||| || |
Sbjct 1493 TCACGTTTGCTGACATGGATAAGGATATAATGGTAATCAACCACTACAAGTATCAGGTGT 1552
Query 1551 GGGAGGTTTTCAAAGAGAAGTTTTATCGGAGAGTCGCGACTTATGTAGCGGATTGGCAAA 1610
||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||
Sbjct 1553 GGGAGGTTTTCAAAGAGAAGTTTTATCGGCGAGTCGCGACGTACGTAGCGGATTGGCAAA 1612
Query 1611 ACGAAGAGAATGTCGGGTCGAGAGATCGGGCACCCGGTTTAGGAACCCGACCCGTTGAAC 1670
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1613 ACGAAGAGAATGTCGGGTCAAGAGATCGAGCACCCGGTTTAGGAACCCGACCCGTTGAAC 1672
Query 1671 CATCTGATTGGGCTGAGAGATTCTGTGAGGTGAATGATACGGGGCTTAAAGATCAGGTGT 1730
||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||
Sbjct 1673 CATCTGATTGGGCTGAGAGATTCTGTGAGGTTAATGATACGGGGCTTAGAGATCAAGTGT 1732
Query 1731 TTGAGAAGTTTAAAGACAATAAAACGCAGCGTTTAATGTGGGAAAAAGCGGAAGA---CG 1787
|||||||||| |||||||| ||||||||||||||| | ||||||||||||||||| ||
Sbjct 1733 TTGAGAAGTTCAAAGACAAAAAAACGCAGCGTTTAGTTTGGGAAAAAGCGGAAGAAGACG 1792
Query 1788 ACAATATCCAGAGAATGGTGAGTGAAACACCATCAAGAGTTACTAGTCGATCCAGAGATG 1847
||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 1793 ACAATATCCAGAGAATGGTGAGTGAAACACCATTGAGAGTTACTAATCGATCTGGAGATG 1852
Query 1848 GATCAAATGGATCGAAGGAAGTATCGATCGCGAGAGAGAAGAATGGTGAAAACGCAGAGA 1907
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1853 GATCAAATGGATCAAAGGAAGTATCGATCGCGAGAGAGAAGAATGGTGAAAACGCAGAGA 1912
Query 1908 TTTTCATCAGCCCGAGATTCAAATCTGCGGCGGCTCTGGCGGGTTGGGACGAAGAAGATC 1967
| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1913 TATTCATCAGCCCGAGATTCAAATCAGCGGCGGCTATGGCGGGTTGGGACGAAGAAGATC 1972
Query 1968 TGATAATCGCTAGCTTTGTGGTTGAAGATACTCCTGAAAGAAGCTCTTCAAAGCGAAGGA 2027
|||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 1973 TGATAATCGCTAGCTTTGTGGTAGATGATACTCCTGAAAGAAGTTCTTCAAAGCGAAGGA 2032
Query 2028 GACGTTCCAATTTGTTGTTTAAATCAACCCCACCTTCAGGTTCTTCAAGAAGGAAGCAGA 2087
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 2033 GACGTTCCAATTTGTTGTTTAAATCAACCCCACCTTCTGGTTCTTCAAGAAGGAATCAGC 2092
Query 2088 GTGTTAAACAAAATCTTGTTGCGTTACCTGTTATTGATCTTGATGAAGTAATCAGACATg 2147
||||||| |||| ||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 2093 GTGTTAAGCAAAGTCTTGTTCCGTTACCTGTTATTGATCTTGATAAAGTAATCAGACATG 2152
Query 2148 aagaagagaaatctgcagagaagaagaaaaagaagagagagatggaaacagaaacacaag 2207
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2153 AAGAAGAAAAATCTGCAGAGAAGAAGAAAAAGAAGAGAGAGATGGAAACAGAAACAAAAG 2212
Query 2208 acgagaagaagaaaatagataaagatgagaagaaCTTGTCAGAGCAGAACCCAATTCCTG 2267
| ||| |||||||||||||||||||||||||| |||||||| || | |
Sbjct 2213 A--AGA-GAAGAAAATAGATAAAGATGAGAAGAGTTTGTCAGATCA--------T----G 2257
Query 2268 TTGTGCTTCCTTGCATAGATAAGCTTCGAGACGAATTGTCTTGCGCGATTTGTCTTGAGA 2327
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2258 TTGTGCTTCCTTGCATAGATAAGCTTCGAGATGAATTGTCTTGCGCGATTTGTCTTGAGA 2317
Query 2328 TTTGCTTTGAACCCAGTACTACAACCTGTGGACACAGCTTCTGCAAAAAGTGTTTGCGAT 2387
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2318 TTTGCTTTGAACCTAGTACTACAACTTGTGGACACAGCTTCTGCAAAAAGTGTTTGCGAT 2377
Query 2388 CTGCGGCGGATAAGTGTGGAAGGAAATGCCCTAAATGCAGGCAACTAATAGGAAATGGAA 2447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2378 CTGCGGCGGATAAGTGTGGAAGGAAATGCCCTAAATGCAGGCAACTAATAGGAAATGGAA 2437
Query 2448 GATATTGTACGGTTAATACGGTTCTTTGGAACACAATCCAGCTTTTGTTCCCTAAAGAAG 2507
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2438 GATATTGTACTGTCAATACGGTTCTTTGGAACACAATCCAGCTTTTGTTCCCTAAAGAAG 2497
Query 2508 TCGAAGCACATAGAGCTGCTGCTGCTATCTTGAAAGGCAAGGAAACGCCGAGTCCTAGAA 2567
|||||||||| ||||||||| |||||| ||||||||||||||| || |||||||||||||
Sbjct 2498 TCGAAGCACAGAGAGCTGCTTCTGCTAACTTGAAAGGCAAGGAGACACCGAGTCCTAGAA 2557
Query 2568 ATCCTAATCAAAGGCTAAGAAGCAGAAACAGAGACACTGCCTTGTTTCAAGAAAGGTTAC 2627
|||| |||||||||||||||||||||||||| || ||||| ||||||||||| |||||||
Sbjct 2558 ATCCGAATCAAAGGCTAAGAAGCAGAAACAGGGAAACTGCATTGTTTCAAGAGAGGTTAC 2617
Query 2628 AAAGAGAGGATATTTCGAGATTGCTTGTATCCgaagagagaagcgagaggagcgagagaa 2687
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 2618 AAAGAGAGGATATTTCGAGATTGCTTGTATCTGAAGAGAGAAGTGAGAGGAGCGAAAGAA 2677
Query 2688 ggaggagaagCGCAAGTATGAGGTTGGATCAAGATAGGGATGCTGCATTAGC-ATTGCGG 2746
|||||||||| |||||||||||||||||||| |||||||||| |||||||| || ||||
Sbjct 2678 GGAGGAGAAGTACAAGTATGAGGTTGGATCAAAATAGGGATGCAGCATTAGCGAT-GCGG 2736
Query 2747 TTACAGCGGCAAGAGTTCGCATCAGCTTTTGGCGCAACGACGGCTGAAACTTCTTCTTCA 2806
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2737 TTACAGCGACAGGAGTTCGCATCAGCTTTTGGCGCAACGACGGCTGAAACTTCTTCTTCA 2796
Query 2807 TCGGTTTCTACTCTGTCGCTAGCAAGAGCTAACCTG-AGAGCTATGGCGTCAAGAGCTGT 2865
||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||
Sbjct 2797 TCGGTTTCTACTCTGTCGCGAGCAAGAGCTAACCTGCA-AGCTATGGCGTCAAGAGCTGT 2855
Query 2866 TCGCAGGCAAGGATGA 2881
||||||||||||||||
Sbjct 2856 TCGCAGGCAAGGATGA 2871
> AT5G40720.1 | Symbols: | Domain of unknown function (DUF23)
| chr5:16297898-16300001 FORWARD LENGTH=2025
Length=2025
Score = 931 bits (504), Expect = 0.0
Identities = 1167/1476 (79%), Gaps = 89/1476 (6%)
Strand=Plus/Plus
Query 356 ACGATTCGTGAAGC-GGTGAAATTACCTGAACAAACGTTGGTTTTCCTAAAATACCCT-C 413
||||| | |||||| | || | || || || ||||| ||| ||||||||||||||||| |
Sbjct 370 ACGATCCATGAAGCAGTTG-AGTTTCCCGACCAAACATTGATTTTCCTAAAATACCCTCC 428
Query 414 AGTC-TCTTCGGTTATTTACAAAAGACGATCTCATTTGCGTTTACT-C--CG-----G-T 463
| || || |||||| ||||| ||||| || ||| ||||||||| || | || | |
Sbjct 429 A-TCTTC-TCGGTTTTTTACGAAAGAGGACCTCTTTTGCGTTTTCTCCGACGTAAACGAT 486
Query 464 TCGTCGAAGCTACGGAAAGTG-TATCC-GACG-GCTGTTAACAGA-GACAAATTCGGAGG 519
||||| || || |||| | | ||| || | || ||| || ||| | | || |
Sbjct 487 TCGTCTAAACTTTTTAAAGAGCT-TCCTTTCGCGGTGGAAACCGACGAC-TA-T-GGCCG 542
Query 520 TCAGATCGTACGGTG-TCCTGAAACGCCACGTGGCTACACCATATCGCTTGCTGTTTCGA 578
||||||||||||||| ||| | ||| |||||| | || |||| || || |||||||
Sbjct 543 TCAGATCGTACGGTGTTCC-GCCGTGCCTCGTGGCAATACTGTATCCCTCGCCGTTTCGA 601
Query 579 GATGGA-CGACG--GATGATCATCTCCCGGCT-GGGC-CAACTCACCGGTGGGATTGGCT 633
|||||| | | ||| || |||||| | | |||| | || ||||| |||||||||||
Sbjct 602 GATGGAGGGTTGATGATTATAATCTCCAAG-TAGGGCTC-ACACACCGATGGGATTGGCT 659
Query 634 TTTTTACGACGCCGTGATCGACTACGATAACTCTACGGTGGTTTTTGTCAAGGGGCTTAA 693
| |||||||||||||||||| |||| || || ||||||||||||||||||||||||||
Sbjct 660 GGTGTACGACGCCGTGATCGACGACGACAATTCCACGGTGGTTTTTGTCAAGGGGCTTAA 719
Query 694 TCTACGGCCAGG-AAGAGTTGCTGACGTGTCGAGATATGAGTGCGTGTACGGCTGGGATT 752
|||||||||||| ||| |||||||||| ||||||||||||||| || ||||| |||||||
Sbjct 720 TCTACGGCCAGGAAAG-GTTGCTGACGCGTCGAGATATGAGTGTGTATACGGTTGGGATT 778
Query 753 TCGCGAAA-CATAATCGGTTAATTAGATCAGATGTTATCTCAGCGGCTCAGGAGATAGTA 811
|| | ||| | || | || ||||| || | | |||||| ||||| || ||||| |||
Sbjct 779 TCAC-AAAGCCCAAACTTTTGCTTAGAGCACAAGCTATCTCTGCGGCCCAAGAGATCGTA 837
Query 812 CGGTGTCGAACACC-GTTAGCTGTGTTAGACGGCCCAA-AAGCGGCCC---GTGGGCCTG 866
|| ||| ||| || | | | || ||||||||||||| ||| ||||| | || |
Sbjct 838 CGTTGTAAAACGCCACTGA-CAGTATTAGACGGCCCAAGAAG-GGCCCAATCTCAACCGG 895
Query 867 TTAAAGTCTCGGTTAGAATTAAAGGAGGAACCGGTATGCTTCCTTCTATCGCTCAACC-- 924
| ||||| || || || | | || ||||| || |||||||||||| | ||||| ||
Sbjct 896 TGAAAGTTTCTGTGAGGA-TCAA--AGGAAGTGGGATGCTTCCTTCTGTAGCTCATCCAA 952
Query 925 -----GGTTCGGATC--ATTAACCCGCCGCGAAAGAAACCGTTTCAAATGTGCGTTTGCA 977
|| ||| || || || | | || | ||| ||||| ||| ||| |||||||
Sbjct 953 TTAAACGTCCGGGTCGGATCAA--AGTCTCG--A-AAA-CGTTTGAAACGTGTGTTTGCA 1006
Query 978 CTATGACGCGAAACGCAGC-CGCGGTTTTGA-GAGAGTGGGTGATGTATCACGCCGGAAT 1035
| ||||||||||||||||| | ||||| | |||| |||||||||||||||||||||||
Sbjct 1007 CCATGACGCGAAACGCAGCAAAC-GTTTT-ACGAGAATGGGTGATGTATCACGCCGGAAT 1064
Query 1036 CGGCGTTCAACGGTGGTTCATATACGATAACAACAGCGATGACGACATAATCGCCGAGAT 1095
||||||||||||||||||||| ||||| ||||||||||| |||||||| | |||||||
Sbjct 1065 CGGCGTTCAACGGTGGTTCATCTACGACAACAACAGCGACGACGACATTGTTTCCGAGAT 1124
Query 1096 CGAGAATCTCGAAAGA-CGCGGTTACAATATCTCGAGACATTTCTGGCCGTGGATTAAAA 1154
| ||||||| |||| | ||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 1125 CAAGAATCTAGAAA-ATCGCGGTTACAACATCTCGAGACATTTTTGGCCGTGGATCAAAA 1183
Query 1155 CTCAAGAAGCTGGATTCTCTAATTGTGCGATTCGTGCAAAGAGCGATTGCGATTGGATCG 1214
|||| ||||| |||||| | ||||| |||||||| ||||||||||||||||||||| |||
Sbjct 1184 CTCAGGAAGCAGGATTCGCAAATTGCGCGATTCGAGCAAAGAGCGATTGCGATTGGGTCG 1243
Query 1215 CGTTTATTGACGTCGACGAGTTCTTCTACATCCCCTCCGGTGAATCCCTAACTTCCG--- 1271
||||||| ||||||||||||||||||||||||||||| ||| || | ||||| ||
Sbjct 1244 CGTTTATCGACGTCGACGAGTTCTTCTACATCCCCTCTGGTCAAACTCTAACCAACGTAA 1303
Query 1272 TCATAAA--A-A--ATTACA-C-T-AGC-TCCGATTCGATTGGTGAAATTCGAACGCCGT 1322
||| ||| | | | ||| | | | | |||| ||| |||||||||||||||||||
Sbjct 1304 TCAGAAATCACACGACAACACCATCATCGTCCGGCGAGATCGGTGAAATTCGAACGCCGT 1363
Query 1323 GCCATAGTTTTGGACCGTCGGG--TTTGAGATCTCGACCACG-AGATGGAGTCACCGCGG 1379
| || ||||||||||||||||| || |||||| | ||| || || |||||||| ||||
Sbjct 1364 GTCACAGTTTTGGACCGTCGGGACTTAGAGATC-C-ACCGCGCAG-CGGAGTCACAGCGG 1420
Query 1380 -GATACACTTGCCGTGTGGTGTTACCGGAGAGACACAAGAGCATAATCCGGCCGGAAGCG 1438
| ||||| || ||| ||| ||||||||||||||| || |||||||| | |||||| ||
Sbjct 1421 CG-TACACATGTCGTATGGCGTTACCGGAGAGACATAAAAGCATAATTAGACCGGAATCG 1479
Query 1439 ATGAACGCGACGCTGATTAACGTGGTTCACCATTTTCACCTCAGAGATGGATTCACGTTT 1498
| ||||| ||||| || ||||| ||||| ||||||||| | | ||| | |||| |||||
Sbjct 1480 CTAAACGCAACGCTAATAAACGTCGTTCATCATTTTCACTTAAAAGAAGAATTCGCGTTT 1539
Query 1499 GCTGACATGGACAAGGA-TATAATGGTAATTAACCATTACAAATATCAAGTTTGGGAGGT 1557
| |||| |||| || || || ||||||||||||||||| |||||||| |||||||| |
Sbjct 1540 GTTGACGTGGATAA-GAGTACGATGGTAATTAACCATTATAAATATCAGGTTTGGGATAT 1598
Query 1558 TTTCAAAGAGAAGTTTTATCGGAGAGTCGCGACTTATGTAGCGGATTGGCAAAACGAAGA 1617
||| || ||||||||| | ||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1599 TTTTAAGGAGAAGTTTAAAAGGAGAGTAGCGACTTATGTGGCGGATTGGCAAAACGAAGA 1658
Query 1618 GAATGTCGGGTCGAGAGATCGGGCACCCGGTTTAGGAACCCGACCCGTTGAACCATCTGA 1677
|||||||||||||| |||||||||||| |||||||| |||||||||||||||||| ||||
Sbjct 1659 GAATGTCGGGTCGAAAGATCGGGCACCTGGTTTAGGGACCCGACCCGTTGAACCAACTGA 1718
Query 1678 TTGGGCTGAGAGATTCTGTGAGGTGAATGATACGGGGCTTAAAGATCAGGTGTTTGAGAA 1737
|||||||||||||||||||||||||| |||| ||||||| ||| |||||| |||||
Sbjct 1719 TTGGGCTGAGAGATTCTGTGAGGTGAGCGATATTGGGCTTAGGGATTGGGTGTTGGAGAA 1778
Query 1738 GTTTAAAGACAATAAAACGCAGCGTTTAATGTGGGA 1773
|| | ||| |||||||||||||||| | |||||
Sbjct 1779 ATTCAGTGACCGTAAAACGCAGCGTTTAGTATGGGA 1814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143176455322
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5