BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484524
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27350.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1251 0.0
AT5G40700.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 327 1e-88
> AT3G27350.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G40700.1). | chr3:10125659-10127992
FORWARD LENGTH=1635
Length=1635
Score = 1251 bits (677), Expect = 0.0
Identities = 812/873 (93%), Gaps = 25/873 (3%)
Strand=Plus/Plus
Query 100 ttttttttttAGAATTTTG-TTT-TG--TTTGATCTTGAGGTTG-AAAATGGGTGAATCT 154
||||||||||||||||| | ||| || |||||||||||||||| |||||||||||||||
Sbjct 532 TTTTTTTTTTAGAATTTGGTTTTGTGTTTTTGATCTTGAGGTTGTAAAATGGGTGAATCT 591
Query 155 GCAGTTCTGGTTCATTCTTATTCTTTCGCAGCTCCTATTACTCGTAACGATTCTCATGAG 214
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 592 GCAGTTCTGGTTCATTCTTATTCCTTCGCAGCTCCTATTACTCGTAACGATTCTCATGAG 651
Query 215 GAAAATACGATTCATGCGTTAAGTCAATCAATTTCATTTGGGAAATTCATGACAGAGAAT 274
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 652 GAGAATACGATTCATGCGTTAAGTCAATCAATATCATTTGGGAAATTCATGACAGAGAAT 711
Query 275 CTAGAATGGGGGAAATGGTCAAGCTTTTCACATAAGAAGTATGTTGAAGAAGCAGAGAAA 334
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 712 CTAGAATGGGGGAAATGGTCAAGCTTTTCACATAAAAAGTATGTTGAAGAAGCAGAGAAA 771
Query 335 TACTCACGTCCTGGATCTGTTGCACA-AAAGAAAGCTTTCTTTGAAGCTCATTACAAGAG 393
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 772 TACTCACGTCCTGGATCTGTTGCACAGAAA-AAAGCTTTCTTTGAAGCTCATTACAAGAG 830
Query 394 AATAGCTGAAGCTAAGAAAGCTGCAACGGAAGAACAACCAACTGTTACTCCTGCTGAAGT 453
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct 831 AATAGCTGAAGCTAAGAAAGCTGCAACGGAAGAACAACCATCCGTTACTCCTGCTGAGGT 890
Query 454 TTTGCTTCATACTTTGGAAACTCAAcctcctcctcctcctcctcc---GGTGATTAA-GT 509
||||||||||||||||||||| || |||||||||||||||||||| |||| |||| ||
Sbjct 891 TTTGCTTCATACTTTGGAAACACAGCCTCCTCCTCCTCCTCCTCCTCTGGTG-TTAAAGT 949
Query 510 GTGGTGAAGAAGGATGTGAAAGAAACAGTTTTCAgattgatgatcatgatgtgactgatg 569
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 ATGGTGAAGAAGGACGTGAAAGAAACAGTTTTCAGATTGATGATCATGATGTGACTGATG 1009
Query 570 aattggagaatgtgatgtttggtgatgatgatg--a-GGAG-A--AG-A-A-GAAGGTAG 620
||||||| |||||||||||||||| |||| ||| | |||| | || | | ||||||||
Sbjct 1010 AATTGGAAAATGTGATGTTTGGTGGTGATTATGTTAAGGAGGAGGAGGAGAAGAAGGTAG 1069
Query 621 AGGAAGACTTGTTGAAGGAGGATTGGTCTGTTGGTGAAAAGGAGAAACAACAGAGGAAAT 680
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1070 AGGAAGAGTTGTTGAAGGAGGATTGGTCTGTTGGTGAAAAGGAGAAACAACACAGGAAAT 1129
Query 681 C-GATTACGAAGAACAGACCGGTGTTTAGATTGTCTCTGGAGAAAACAATCCCTCCGAAG 739
| | | || ||||| ||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1130 CTG-TAACTAAGAATAGACCGGTGTTTAGATTGTCTTTGGAGAAAACTATCCCTCCGAAA 1188
Query 740 TCTCTGGATGAGATATCTTTAACTGAGAAGAGAAGCGAAAGACCGATAACTCAGTTAGAA 799
||| | |||||||| |||||||| ||||| ||||||||||||||||| |||||| |||||
Sbjct 1189 TCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGCGAAAGACCGATGACTCAGGTAGAA 1248
Query 800 GAGAAACCGATTCACCGTCAGAAATTCGGTCTCTTGAGCTGTTTCATAAGTAATGCTAAA 859
|| |||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1249 GAAAAACCGGTTCACCGCCAGAGATTCGGTCTCTTGAGCTGTTTCATAAGTAATGCTAAA 1308
Query 860 -CATCAAGATCAGAATCAGAGCAGGAATAAGAGAAAGACGGAGAAGAAGAAGCAGTTTCT 918
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 AC-TCAAGATCAGAACCAGAGCAGGAATAAGAGAAAGACGGAGAAGAAGAAGCAGTTTCT 1367
Query 919 GTGTCTTTGTTTGAAGCCAAAGACTGTAAGAGA 951
||||||||||||||||||||||||| |||||||
Sbjct 1368 GTGTCTTTGTTTGAAGCCAAAGACTATAAGAGA 1400
Score = 279 bits (151), Expect = 3e-74
Identities = 187/204 (92%), Gaps = 4/204 (2%)
Strand=Plus/Plus
Query 1109 AGATTGGCACCGATTATACTCTTTTCTCACCAGTTTGGAAAAGAGTCCGAGTGCAATAGG 1168
||| ||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1398 AGAATGGCACCGATTATGCTCAATTCACACCAGTTTGGAAAAGAGTCCGAGTGCAATAGG 1457
Query 1169 AAATAGCTTCCTTTGTTTTGTTCTCTTTAAATCTTTGTTATCTGTCTTACTATGTAATGA 1228
|| ||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1458 AATTAGCTTCTTTTGTTTGGTTCTCTTTGAATCTTTGTTATCTGTCTTACTATGTAATGA 1517
Query 1229 AAGAACAACAACTCCAGTTTCTTGATTTGATCTGATCTTAATCTTGAAT-TGGTTTGTTA 1287
||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1518 AAGAACAAC---TCCAGTTTCTTGATTTGATCTGATCTTAATCTTGAAAATGGATTGTTG 1574
Query 1288 TTGATAAAGCTATTCACTTTACAC 1311
||| ||||||||||||||||||||
Sbjct 1575 TTGTTAAAGCTATTCACTTTACAC 1598
> AT5G40700.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G27350.1);
Has 475 Blast hits to 414 proteins in 93 species: Archae -
0; Bacteria - 43; Metazoa - 127; Fungi - 17; Plants - 143;
Viruses - 7; Other Eukaryotes - 138 (source: NCBI BLink). |
chr5:16291890-16293512 REVERSE LENGTH=1138
Length=1138
Score = 327 bits (177), Expect = 1e-88
Identities = 244/276 (88%), Gaps = 6/276 (2%)
Strand=Plus/Plus
Query 142 AATGGGTGAATCTGCAGTTCTGGTTCATTCTTATTCTTTCGCAGCTCCT-ATTACTCGTA 200
||||| ||||||||| |||||| ||||||| ||||| |||||||||||| || ||||||
Sbjct 69 AATGGCTGAATCTGCTGTTCTGTTTCATTCCTATTCGTTCGCAGCTCCTCCTT-CTCGTA 127
Query 201 ACGATTCTCATGAGGAAAATACGATTCATGCG-TTAAGTCAATCAATTTCATTTGGGAAA 259
| || ||||||||||| |||||||| |||||| || ||||||||| |||||||||| | |
Sbjct 128 ATGAATCTCATGAGGATAATACGATGCATGCGCTT-AGTCAATCAGTTTCATTTGGTAGA 186
Query 260 TTCATGACAGAGAATCTAGAATGGGGGAAATGGTCAAGCTTTTCACATAAGAAGTATGTT 319
||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 187 TTCATGACAGAGAATCTTGAATGGGGGAAATGGTCAAGTTTTTCGCATAAGAAGTATGTC 246
Query 320 GAAGAAGCAGAGAAATACTCAC-GTCCTGGATCTGTTGCACAAAAGAAAGCTTTCTTTGA 378
|| ||||| ||||| | ||| | | |||||||||||||| || |||||||||||||||||
Sbjct 247 GATGAAGCTGAGAAGTTCTCTCAG-CCTGGATCTGTTGCTCAGAAGAAAGCTTTCTTTGA 305
Query 379 AGCTCATTACAAGAGAATAGCTGAAGCTAAGAAAGC 414
|||||||||||||| |||||||||||| ||||||||
Sbjct 306 AGCTCATTACAAGAAAATAGCTGAAGCAAAGAAAGC 341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64507700325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5