BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484525
Length=605
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27360.1 | Symbols: | Histone superfamily protein | chr3:10... 785 0.0
AT5G10400.1 | Symbols: | Histone superfamily protein | chr5:32... 571 2e-162
AT3G27380.1 | Symbols: SDH2-1 | succinate dehydrogenase 2-1 | c... 470 8e-132
AT5G10390.1 | Symbols: | Histone superfamily protein | chr5:32... 436 9e-122
AT5G65350.1 | Symbols: HTR11 | histone 3 11 | chr5:26119211-261... 383 1e-105
AT1G09200.1 | Symbols: | Histone superfamily protein | chr1:29... 309 2e-83
> AT3G27360.1 | Symbols: | Histone superfamily protein | chr3:10129105-10129937
REVERSE LENGTH=833
Length=833
Score = 785 bits (425), Expect = 0.0
Identities = 505/543 (93%), Gaps = 7/543 (1%)
Strand=Plus/Plus
Query 1 ACAATCTCAACAATCAAAAGTTTC-AATTTTTCATTCG-AAAGAATTCTCAAAATGGCTA 58
||| |||||||||||||||| ||| ||||||||||| | ||||||||||||||||||||
Sbjct 17 ACAGTCTCAACAATCAAAAGCTTCAAATTTTTCATT-GTCAAGAATTCTCAAAATGGCTA 75
Query 59 GAACAAAGCAAACAGCCAGAAAATCCACCGGAGGAAAAGCACCAAGGAAGCAACTCGCGA 118
|||||||||||||||| ||||||||||||||||||||||| || || |||||||| ||||
Sbjct 76 GAACAAAGCAAACAGCTAGAAAATCCACCGGAGGAAAAGCTCCTAGAAAGCAACTGGCGA 135
Query 119 CGAAAGCAGCAAGAAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCACACAGATTCC 178
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 CGAAAGCAGCAAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCACACAGATTCC 195
Query 179 GTCCAGGAACAGTAGCGTTAAGAGAAATCAGGAAGTATCAAAAAAGCACTGAGCTTTTGA 238
|||||||||||||||||||| | |||||||| ||||||||||||||||| ||||||||||
Sbjct 196 GTCCAGGAACAGTAGCGTTACGTGAAATCAGAAAGTATCAAAAAAGCACAGAGCTTTTGA 255
Query 239 TCCGTAAGCTTCCGTTCCAGAGATTGGTTCGTGAGATTGCTCAAGATTTCAAGACGGATC 298
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 256 TCCGTAAGCTTCCTTTCCAGAGATTGGTTCGTGAGATAGCTCAAGATTTCAAGACGGATC 315
Query 299 TGAGGTTTCAGAGTAGTGCAGTCGCAGCTCTTCAAGAAGCAGCTGAAGCCTATTTGGTTG 358
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 316 TTAGGTTTCAGAGTAGTGCAGTCGCAGCTCTTCAAGAAGCAGCTGAAGCTTATTTGGTTG 375
Query 359 GTTTGTTTGAAGATACTAATCTTTGTGCTATTCATGCTAAGAGGGTTACGATTATGCCTA 418
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 GATTGTTTGAAGATACTAATCTTTGTGCTATTCATGCTAAGAGGGTTACGATTATGCCTA 435
Query 419 AGGATATTCAACTTGCGAGGAGGATTAGAGGTGAGAGAGCTTAAGATATGATgaagagga 478
||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| ||
Sbjct 436 AGGATATTCAACTTGCGAGGAGGATTAGAGGTGAGAGGGCTTAAGATTTGAAGAAGATGA 495
Query 479 agaagaagaagaa-gG-CTACTTTGGGTTTTTGCTTGTTTGCTTTCATTAGATCTGTAGA 536
||||||| || || || ||| | | | ||| ||||||||||| |||| |||| ||||||
Sbjct 496 AGAAGAAAAACAATGGTCTAGTGTAGATTT--GCTTGTTTGCTCTCATAAGATTTGTAGA 553
Query 537 TTC 539
|||
Sbjct 554 TTC 556
Score = 106 bits (57), Expect = 3e-22
Identities = 63/66 (95%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 540 TAGACTTTTGTTAAGAAGTGTCTTCCAGATGTTCGATGAAATGCCCAAATGAAAATTTAA 599
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TAGTCTTTTGTTCTGAAGTGTCTTCCAGATGTTCGATGAAATGCCCAAATGAAAATTTAA 644
Query 600 TCTACT 605
||||||
Sbjct 645 TCTACT 650
> AT5G10400.1 | Symbols: | Histone superfamily protein | chr5:3270289-3270952
REVERSE LENGTH=664
Length=664
Score = 571 bits (309), Expect = 2e-162
Identities = 405/451 (90%), Gaps = 8/451 (2%)
Strand=Plus/Plus
Query 49 AAAATGGCTAGAACAAAGCAAACAGC-CAGAAAATCCACCGGAGGAAAAGCACCAAGGAA 107
||||||||| | || ||||||||||| | | ||||||||||||||||| |||||||||||
Sbjct 62 AAAATGGCTCGTACCAAGCAAACAGCTC-GTAAATCCACCGGAGGAAAGGCACCAAGGAA 120
Query 108 GCAACTCGCGACGAAAGCAGCAAGAAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCC 167
|||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 121 GCAACTCGCGACCAAAGCTGCGAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCC 180
Query 168 ACACAGATTCCGTCCAGGAACAGTAGCGTTAAGAGAAATCAGGAAGTATCAAAAAAGCAC 227
||||||||||||||||||||| || ||||| |||||||||||||||||||| || || ||
Sbjct 181 ACACAGATTCCGTCCAGGAACGGTGGCGTTGAGAGAAATCAGGAAGTATCAGAAGAGTAC 240
Query 228 TGAGCTTTTGATCCGTAAGCTTCCGTTCCAGAGATTGGTTCGTGAGATTGCTCAAGATTT 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGAGCTTTTGATCCGTAAGCTTCCGTTCCAGAGATTGGTTCGTGAGATTGCTCAAGATTT 300
Query 288 CAAGACGGATCTGAGGTTTCAGAGTAGTGCAGTCGCAGCTCTTCAAGAAGCAGCTGAAGC 347
|||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct 301 CAAGACGGATCTGAGGTTCCAGAGCAGTGCCGTCGCAGCTCTTCAGGAAGCAGCTGAGGC 360
Query 348 CTAT-TTGGTTGGTTTGTTTGAAGATACTAATCTTTGTGCTATTCATGCTAAGAGGGTTA 406
||| ||| |||| | ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 361 TTATCTTG-TTGGGCTCTTTGAAGATACTAATCTCTGTGCGATTCATGCTAAGAGGGTTA 419
Query 407 CGATTATGCCTAAGGATATTCAACTTGCGAGGAGGATTAGAGGTGAGAGAGCTTAAGATA 466
||||||||||||||||||| || ||||||||||| || ||||| ||||| ||||||| |
Sbjct 420 CGATTATGCCTAAGGATATCCAGCTTGCGAGGAGAATCAGAGGAGAGAGGGCTTAAG-T- 477
Query 467 TGAT-gaagaggaagaagaagaagaagGCTA 496
|| ||||| || ||||| |||||| |||
Sbjct 478 -GAACGAAGATGATGAAGATTAAGAAGACTA 507
Score = 76.8 bits (41), Expect = 2e-13
Identities = 49/53 (92%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 553 AGAAGTGTCTTCCAGATGTTCGATGAAATGCCCAAATGAAAATTTAATCTACT 605
||| |||||||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 596 AGATGTGTCTTCCAGATGTTCGATGAAATGCCTAAAGGAAATTTTAATCTACT 648
> AT3G27380.1 | Symbols: SDH2-1 | succinate dehydrogenase 2-1 |
chr3:10129610-10132760 REVERSE LENGTH=2424
Length=2424
Score = 470 bits (254), Expect = 8e-132
Identities = 294/313 (94%), Gaps = 3/313 (1%)
Strand=Plus/Plus
Query 1 ACAATCTCAACAATCAAAAGTTTC-AATTTTTCATTCG-AAAGAATTCTCAAAATGGCTA 58
||| |||||||||||||||| ||| ||||||||||| | ||||||||||||||||||||
Sbjct 2113 ACAGTCTCAACAATCAAAAGCTTCAAATTTTTCATT-GTCAAGAATTCTCAAAATGGCTA 2171
Query 59 GAACAAAGCAAACAGCCAGAAAATCCACCGGAGGAAAAGCACCAAGGAAGCAACTCGCGA 118
|||||||||||||||| ||||||||||||||||||||||| || || |||||||| ||||
Sbjct 2172 GAACAAAGCAAACAGCTAGAAAATCCACCGGAGGAAAAGCTCCTAGAAAGCAACTGGCGA 2231
Query 119 CGAAAGCAGCAAGAAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCACACAGATTCC 178
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2232 CGAAAGCAGCAAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCACACAGATTCC 2291
Query 179 GTCCAGGAACAGTAGCGTTAAGAGAAATCAGGAAGTATCAAAAAAGCACTGAGCTTTTGA 238
|||||||||||||||||||| | |||||||| ||||||||||||||||| ||||||||||
Sbjct 2292 GTCCAGGAACAGTAGCGTTACGTGAAATCAGAAAGTATCAAAAAAGCACAGAGCTTTTGA 2351
Query 239 TCCGTAAGCTTCCGTTCCAGAGATTGGTTCGTGAGATTGCTCAAGATTTCAAGACGGATC 298
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2352 TCCGTAAGCTTCCTTTCCAGAGATTGGTTCGTGAGATAGCTCAAGATTTCAAGACGGATC 2411
Query 299 TGAGGTTTCAGAG 311
| |||||||||||
Sbjct 2412 TTAGGTTTCAGAG 2424
> AT5G10390.1 | Symbols: | Histone superfamily protein | chr5:3268847-3269550
REVERSE LENGTH=704
Length=704
Score = 436 bits (236), Expect = 9e-122
Identities = 364/426 (85%), Gaps = 8/426 (2%)
Strand=Plus/Plus
Query 43 ATTCTCAAAATGGCTAGAACAAAGCAAACAGCCAGAAAATCCACCGGAGGAAAAGCACCA 102
||| || |||||||| | || |||||||| || || |||||||| ||||| |||||||||
Sbjct 68 ATT-TCGAAATGGCTCGTACTAAGCAAACCGCGAGGAAATCCACAGGAGGCAAAGCACCA 126
Query 103 AGGAAGCAACTCGCGACGAAAGCAGCAAGAAAATCAGCTCCAGCCACCGGAGGAGTGAAG 162
|| ||||||||||| || || || ||||| ||||| ||||| ||||||||||||||||||
Sbjct 127 AGAAAGCAACTCGCAACCAAGGCGGCAAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAG 186
Query 163 AAGCCACACAGATTCCGTCCAGGAACAGTAGCGTTAAGAGAAATCAGGAAGTATCAAAAA 222
||||| || ||||||||||||||||| || || || ||||| |||||||||||||| ||
Sbjct 187 AAGCCGCATAGATTCCGTCCAGGAACTGTTGCCTTGAGAGAGATCAGGAAGTATCAGAAG 246
Query 223 AGCACTGAGCTTTTGATCCGTAAGCTTCCGTTCCAGAGAT-TGGTTCGTGAGATTGCTCA 281
|||||||||||| |||||||||||||||| |||||| | | ||||||||||||| |||||
Sbjct 247 AGCACTGAGCTTCTGATCCGTAAGCTTCCTTTCCAGCG-TCTGGTTCGTGAGATAGCTCA 305
Query 282 AGATTTCAAGACGGATCTGAGGTTTCAGAGTAGTGCAGTCGCAGCTCTT-CAAGAAGCAG 340
||||||||||||||||||||||||||||| ||||| || || ||| || ||||| || |
Sbjct 306 GGATTTCAAGACGGATCTGAGGTTTCAGAGCAGTGCTGTTGCTGCT-TTACAAGAGGCTG 364
Query 341 CTGAAGCCTAT-TTGGTTGGTTTGTTTGAAGATACTAATCTTTGTGCTATTCATGCTAAG 399
|||| || || ||| |||||||||||||||| ||||||||||| || ||||| ||||||
Sbjct 365 CTGAGGCTTACCTTG-TTGGTTTGTTTGAAGACACTAATCTTTGCGCCATTCACGCTAAG 423
Query 400 AGGGTTACGATTATGCCTAAGGATATTCAACTTGCGAGGAGGATTAGAGGTGAGAGAGCT 459
||||| || || |||||||||||||| || || |||||||| || ||||| || ||||||
Sbjct 424 AGGGTCACCATCATGCCTAAGGATATCCAGCTCGCGAGGAGAATCAGAGGAGAAAGAGCT 483
Query 460 T-AAGA 464
| ||||
Sbjct 484 TGAAGA 489
> AT5G65350.1 | Symbols: HTR11 | histone 3 11 | chr5:26119211-26119825
REVERSE LENGTH=615
Length=615
Score = 383 bits (207), Expect = 1e-105
Identities = 344/411 (84%), Gaps = 6/411 (1%)
Strand=Plus/Plus
Query 52 ATGGCTAGAACAAAGCAAACAGCCAGAAAATCCACCGGAGGAAAAGCACCAAGGAAGCAA 111
|||||| | || ||||| || || |||| |||||||||||||||||| || |||||||||
Sbjct 1 ATGGCTCGTACCAAGCAGACTGCTAGAATATCCACCGGAGGAAAAGCTCCGAGGAAGCAA 60
Query 112 CTCGCGACGAAAGCAGCAAGAAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCACAC 171
| ||| | ||||| || ||| |||| || ||||| || |||||||||||||||||||||
Sbjct 61 TTAGCGCCAAAAGCGGCGAGACAATCTGCACCAGCAACGGGAGGAGTGAAGAAGCCACAC 120
Query 172 AGATTCCGTCCAGGAACAGTAGCGTTAAGAGAAATCAGGAAGTATCAAAAAAGCACTGAG 231
||||||||||||||||| || ||||| ||||| || ||||| || ||||| || || |||
Sbjct 121 AGATTCCGTCCAGGAACTGTTGCGTTGAGAGATATTAGGAAATACCAAAAGAGTACCGAG 180
Query 232 CTTTTGATCCGTAAGCTTCCGTTCCAGAGA-TTGGTTCGTGAGATTGCTCAAGATTTCAA 290
|||||||| | ||||||||||| ||| || ||| |||||||||| ||||||||||||||
Sbjct 181 ATTTTGATCAGAAAGCTTCCGTTTCAGCGACTTG-TTCGTGAGATCGCTCAAGATTTCAA 239
Query 291 GACGGATCTGAGGTTTCAGAGTAGTGCAGTCGCAGCTCTTCAAGAAGCAGCTGAAGCCTA 350
|||||||||||||||||||| ||||| ||||| ||||| || ||||| ||||| || ||
Sbjct 240 AACGGATCTGAGGTTTCAGAGCAGTGCCGTCGCTGCTCTCCAGGAAGCTGCTGAGGCTTA 299
Query 351 T-TTGGTTGGTTTGTTTGAAGATACTAATCTTTGTGCTATTCATGCTAAGAGGGTTACGA 409
||| |||| || || |||||||| || || ||||| ||||| || |||||||| ||||
Sbjct 300 CCTTG-TTGGGTTATTCGAAGATACAAACCTCTGTGCGATTCACGCAAAGAGGGTGACGA 358
Query 410 TTATGCCTAAGGATATTCAACTT-GCGAGGAGGATTAGAGGTGAGAGAGCT 459
| |||||||| || || ||| || ||||| |||||||||||||||||||||
Sbjct 359 TCATGCCTAAAGAGATCCAA-TTAGCGAGAAGGATTAGAGGTGAGAGAGCT 408
> AT1G09200.1 | Symbols: | Histone superfamily protein | chr1:2971593-2972199
REVERSE LENGTH=607
Length=607
Score = 309 bits (167), Expect = 2e-83
Identities = 337/419 (80%), Gaps = 11/419 (3%)
Strand=Plus/Plus
Query 52 ATGGCTAGAACAAAGCAAACAGCCAGAAAATCCACCGGAGGAAAAGCACCAAGGAAGCAA 111
|||||| | || ||||| || || || ||||| ||||||||||| || |||||||||||
Sbjct 68 ATGGCTCGTACCAAGCAGACGGCTAGGAAATCAACCGGAGGAAAGGCTCCAAGGAAGCAG 127
Query 112 CTCGCGACGAAAGCAGCAAGAAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCACAC 171
|| ||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||||
Sbjct 128 CTGGCGACAAAAGCGGCGAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCACAC 187
Query 172 AGATTCCGTCCAGGAACAGTAGCGTTAAGAGAAATCAGGAAGTATCAAAAAAGCACTGAG 231
|||||| | || ||||| || || |||||||||||||||||||| || || |||||||||
Sbjct 188 AGATTCAGACCCGGAACTGTTGCTTTAAGAGAAATCAGGAAGTACCAGAAGAGCACTGAG 247
Query 232 CTT-TTGATCCGTAAGCTTCCGTTCCAGAGA-TTGGTTC-GTGAGATTGCTCAAGATTTC 288
||| || |||||||| || || |||||||| ||| | | | ||||| ||||| || |||
Sbjct 248 CTTCTT-ATCCGTAAACTCCCTTTCCAGAGGCTTG-T-CAGAGAGATCGCTCAGGACTTC 304
Query 289 AAGACGGATCTGAGGTTTC-AGAGTAGTGCAGTCGCAGCTCTTCAAGAAGCAGCTGAAGC 347
|| || ||||| | |||| |||| ||||| ||||| |||||||| ||||| ||||||||
Sbjct 305 AAAACCGATCTTCG-TTTCCAGAGCAGTGCCGTCGCCGCTCTTCAGGAAGCTGCTGAAGC 363
Query 348 CTATTTGGTTGGTTTGTTTGAAGATACTAATCTTTGTGCTATTCATGCTAAGAGGGTTAC 407
|| | || || | || ||||| || ||||| || || ||||| || |||||||| ||
Sbjct 364 TTACCTCGTCGGACTCTTCGAAGACACCAATCTCTGCGCCATTCACGCCAAGAGGGTCAC 423
Query 408 GATTATGCCTAAGGATATTCAACTTGCGAGGAGGATTAGAGGTGAGA-GAGCTTAAGAT 465
||| ||||| ||||| || || || ||||| || || ||||| || | ||||||| |||
Sbjct 424 GATCATGCCCAAGGACATCCAGCTCGCGAGAAGAATCAGAGGAGA-ACGAGCTTA-GAT 480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29135805260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5