BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484528
Length=2132
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27390.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3110 0.0
AT5G40640.1 | Symbols: | unknown protein; LOCATED IN: plasma m... 1042 0.0
> AT3G27390.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G40640.1);
Has 101 Blast hits to 99 proteins in 12 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:10133196-10136630
REVERSE LENGTH=2189
Length=2189
Score = 3110 bits (1684), Expect = 0.0
Identities = 2011/2164 (93%), Gaps = 42/2164 (2%)
Strand=Plus/Plus
Query 1 TTTTCATGACGTCTCTTTTGATCT--AC--ATCGTTTGACCTCTCCCTATCTCTAA---T 53
||||||||||||||| |||||||| || || |||||||||||| |||||||||| |
Sbjct 4 TTTTCATGACGTCTCGTTTGATCTACACATATTGTTTGACCTCTCTCTATCTCTAAGTTT 63
Query 54 GCCT-TGAGCTCAA-GCATCCA-C-C-ACG-AT-TA-GACAAGATAAGTAGaaaacaaaa 105
| | | ||| || || | | | | | | || | |||||||||||||| ||| ||||
Sbjct 64 ACATATTCGCT-AATGCGTTGAGCTCAAAGCATCCACGACAAGATAAGTAG-AAA-AAAA 120
Query 106 aagaaaaaC-------ATCCTTCTT-TGGTTCTTCTTCGGACAAAAAGGTCAGAAGGTGT 157
|||| | | | |||||| | |||||||||||||||||||| |||||||||
Sbjct 121 AAGACATCCTTTTTTGGTTCTTCTTCTTCTTCTTCTTCGGACAAAAAGG-AAGAAGGTGT 179
Query 158 TGACTGAATCTTGAGATGGGTTTGTGTTAAGTTCGTGAATACAGTTGAAAG----A-TTC 212
||||||| |||| |||||||||||||||||||| |||| || ||||||||| | |||
Sbjct 180 TGACTGATTCTTAAGATGGGTTTGTGTTAAGTTTGTGAGTATAGTTGAAAGTTTCAGTTC 239
Query 213 AATTTCAATGGAGCCTCCAAAT-GGATTTCGAGCTACGTTGTTACAATTCTTACTCTTCC 271
|||||||||||||||||| ||| |||||||||||| | || || ||||||||||||||||
Sbjct 240 AATTTCAATGGAGCCTCC-AATAGGATTTCGAGCTTCTTTATTCCAATTCTTACTCTTCC 298
Query 272 TTCCTTATTTCATTGGATTGCTGTTTCTGGGTTTCATCAAAGGTATCGTTTTGTGCCCAC 331
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 299 TTCCTTATTTCATTGGATTGCTATTTCTGGGTTTCATCAAAGGTATTGTTTTGTGCCCAC 358
Query 332 TCGTATGTCTCGTTGTGACTATAGGCAACTCCGCGGTCATACTGAGTCTTCTACCCGTTC 391
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 359 TCGTATGCCTCGTTGTGACTATAGGCAACTCCGCGGTCATACTGAGTCTTCTACCAGTCC 418
Query 392 ACATCGTTTGGACTTTCTATTCAATCGTGAGTGCCAAACAAGTAGGACCAATCTTGAAGA 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACATCGTTTGGACTTTCTATTCAATCGTGAGTGCCAAACAAGTAGGACCAATCTTGAAGA 478
Query 452 TCTTTCTATGCTTATGTCTTCCTGCTGCCATCATTCTCTGGCCTATTGTTGGTATTTTAG 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCTTTCTATGCTTATGTCTTCCTGCTGCCATCATTCTCTGGCCTATTGTTGGTATTTTAG 538
Query 512 GGAGTGTTTTGGGAGGAGCTTTATATGGTTTTTTCTCCCCAATTTTCGCCACTTTTGATG 571
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 539 GAAGTGTTTTGGGAGGAGCTTTATATGGTTTCTTCTCCCCAATTTTCGCCACCTTTGATG 598
Query 572 CTGTTGGTGAAGGCAAGCCTTACCAGTTTTTCCATTGCTTTTATGATGGAACTTGGAGCA 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CTGTTGGTGAAGGCAAGCCTTACCAGTTTTTCCATTGCTTTTATGATGGAACTTGGAGCA 658
Query 632 CCATCCAACGCAGCTTCACCGTTGTCCGGGATTTTAAAGATGTTTGCTTTCACTCATACT 691
|||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 659 CCATGCAACGCAGCTTCACCGTTGTTCGGGATTTTAAAGATGTTTGCTTTCATTCATACT 718
Query 692 TCTCACTCATGGATGAGCTTAAACAAAGCTGCCCGGATCGCAAATATTATGAAATAAGGC 751
||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 719 TCTCACTTATGGATGAGCTGAAACAAAGCTGTCCGGATCGAAAATATTATGAAATAAGGC 778
Query 752 TACTTCAACTTCCAGGGGCTTTGGTAGTTTCAGTTCTCGGGGTTCTTGTTGATT-TACCG 810
|||||||||||||||||||||| |||||||||||||||||| | ||||||||| | |||
Sbjct 779 TACTTCAACTTCCAGGGGCTTTAGTAGTTTCAGTTCTCGGGATACTTGTTGATCCT-CCG 837
Query 811 GTGATCTCACTTGTAGCCATATGCAAAAGCCCTTACATGTTGTTCAAAGGATGGCACCGT 870
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 838 GTTATCTCACTTGTAGCCATATGCAAAAGCCCTTATATGTTGTTCAAAGGATGGCACCGT 897
Query 871 TTGTTTCATGACCTAATTGGACGGGAAGGTCCATTCTTGGAGACAATGTGTGTCCCCATT 930
|||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TTGTTTCACGACTTGATTGGACGGGAAGGTCCATTCTTGGAGACAATGTGTGTCCCCATA 957
Query 931 GCAGGCCTCGCGATCTTACTCTGGCCTTTGGCTGTCACGGGCGCGGTTATTGGATCAGTT 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GCAGGCCTCGCGATCTTACTCTGGCCTTTGGCTGTCACGGGCGCGGTTATTGGATCAGTT 1017
Query 991 GTCTCGAGTATCTTCCTTGGTGCTTATGCAGGAGTAGTCTCATATCAGGAATCATCGTTT 1050
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1018 ATCTCTAGTATCTTCCTTGGTGCTTATGCAGGAGTAGTCTCATATCAAGAATCATCTTTT 1077
Query 1051 TACTATGGACTCTGCT-TCATAGTTGCATCTGTGTCCATTTACGACGAGTATAGCACCGA 1109
|||||||||||||||| | |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1078 TACTATGGACTCTGCTAT-ATAGTTGCCTCTGTCTCCATTTACGACGAGTATAGCACCGA 1136
Query 1110 TATACTTGACTTGCCTGAAGGATCTTGTTTTCCAAGGCCGAAATATCGAAGAGAGGAAGA 1169
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||
Sbjct 1137 TATACTTGACTTGCCTGAAGGTTCTTGTTTTCCAAGGCCGAAATATCGAAGAAAGGACGA 1196
Query 1170 GGAACCAACACCTTTTTCTGGTCCTATACCAAGATTAGGCTCTGTCAAGAACGCGTCATC 1229
||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1197 GGAACCAACGCCTTTTTCTGGTCCTGTACCAAGACTAGGCTCTGTCAAGAACGCGTCATC 1256
Query 1230 GATGAGAGCAGGATCAGTCAGAGTCCCTATGATTGATATTAAGCCTCTCGATCTGTTGAA 1289
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GATGAGAGGAGGATCAGTCAGAGTCCCTATGATTGATATTAAGCCTCTCGATCTGTTGAA 1316
Query 1290 TGAGCTCTTTGTGGAATGTAGAAGATTTGGAGAAATTTTGGCGACAAAAGGACTGATAAA 1349
|||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||
Sbjct 1317 TGAGCTCTTTGTGGAATGTAGAAGATATGGAGAAGTTTTAGCGACAAAAGGACTGATAAA 1376
Query 1350 TTCGAAAGATATCGAAGAAGCGAGATCTAGTAAAGGCAGCCAAGTGATCAGCGTTGGTTT 1409
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 CTCGAAAGATATCGAAGAAGCGAGATCTAGTAAAGGCAGCCAAGTGATCAGCGTTGGTTT 1436
Query 1410 ACCGGCTTATTCACTTCTTTATGAGATTCTACGCTCCGTCAAAGCCAATTGTGCCGGCTT 1469
|||||||||| ||||||||| |||||||| ||||| ||||||||||||| | |||||||
Sbjct 1437 ACCGGCTTATGGACTTCTTTACGAGATTCTTCGCTCAGTCAAAGCCAATTCTTCCGGCTT 1496
Query 1470 GTTACTAAGTGACGGTGTAACTGAAATAACTGTCATGAACCGACCAAAAGACGTCTTCTT 1529
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1497 GTTACTAAGTGACGGTGTAACTGAAATAACTACCATGAACCGCCCAAAAGACGTCTTCTT 1556
Query 1530 TGATTGGTTTCTGCATCCGTTGTTGATACTAAAGGAGCAAATGAAAGCTACAAACTTGTC 1589
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1557 TGATTGGTTTCTGAATCCGTTTTTGATACTAAAGGAGCAAATGAAAGCTACAAACTTGTC 1616
Query 1590 CGAGGAAGAAGAAGAGTACCTCGGAAGATTAGTCTTGCTATTTGGAGATCCAGAGAGGCT 1649
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1617 TGAGGAAGAAGAAGAGTACCTCGGAAGATTAGTTTTGCTATTTGGAGATCCAGAGAGGCT 1676
Query 1650 AAAGAGCTCGAATGCCATTTCCGCGTCTCCTCCTCTTACCGAGCGTAAAAGAGCCGAACT 1709
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1677 AAAGAGCTCGAATGCCATTTCCGCGTCTCCTCCTCTCACCGAACGTAAAAGAGCCGAACT 1736
Query 1710 CGATGCCTTTGCTCGCAGGATGCAAGGGCTAACGAAAACGGTATCAAGATATCCAACATT 1769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 CGATGCCTTTGCTCGCAGGATGCAAGGGCTAACGAAAACGGTATCAAGATATCCAACATT 1796
Query 1770 TCGTCGACATTTTGTGGCATTAGTGAAGAAACTATCGGAGGATTTGGACCTAAAAGACAA 1829
||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||
Sbjct 1797 TCGTCGACATTTTGTGGCATTAGTGAAGAAACTATCGGAAGATTTGGACTTGAAAGACAA 1856
Query 1830 CTATTCGGTTAAGGGCGAATCTATAACAGAACCGCCAGCTCCGGTTAAGATCATTTCGCG 1889
| |||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1857 CAATTCGGCTAAGGACGAATCGATAACAGAACCGCCAGCTCCGGTTAAGATCATTTCGCG 1916
Query 1890 GATATTCAGTCAGAGATCATTCAGAAGAAAAGGAAGTGTTAATGGATCCGATCAAGAATT 1949
|||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 1917 GATATTCAGTCAGAGATCGTTCAGAAGAAAAGGAAGTGTCAATGGATCTGATCAAGAATC 1976
Query 1950 GCAAAAGGGTGTCTCACGGAATGTAGATATCGTTTAAACATGGGACGTGTGGTGTGGATA 2009
|||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1977 GCAAAAGGGTGTCTCAAGGAATGTAGATATAGTTTAAACATGGAACGTGTGGTGTGGATA 2036
Query 2010 TTTGAAACTTAAAAAGCCTTTGGTTCTTTGCTCCATAAACTT-GTTATTCCTTGTAAAGA 2068
|||||||||||||| || ||| |||||||||| |||||||| || ||||||||||||||
Sbjct 2037 TTTGAAACTTAAAACGCATTTAGTTCTTTGCTTTATAAACTTTGTCATTCCTTGTAAAGA 2096
Query 2069 TTTATCAGACGtttttttGTTTTATTTATAGAACAGTGTATGTTTTCGTTTATGAATCTG 2128
||| |||||||||||| | || ||||||||||||||||||||||||||||||||| |||
Sbjct 2097 TTTTTCAGACGTTTTTAT-TT--ATTTATAGAACAGTGTATGTTTTCGTTTATGAAACTG 2153
Query 2129 TTCA 2132
|||
Sbjct 2154 CTCA 2157
> AT5G40640.1 | Symbols: | unknown protein; LOCATED IN: plasma
membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING:
7 growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G27390.1); Has 104 Blast hits
to 102 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa
- 2; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr5:16277042-16280424 FORWARD
LENGTH=2230
Length=2230
Score = 1042 bits (564), Expect = 0.0
Identities = 1299/1641 (79%), Gaps = 101/1641 (6%)
Strand=Plus/Plus
Query 216 TTC-AATGGAGCCTCCAAATGG-AT-TTCGAGCTACGT-TGTTACAATTCT-TACTCTTC 270
||| |||||||||||||| || || || | ||| | | ||| ||||| | ||||||||
Sbjct 299 TTCTAATGGAGCCTCCAACGGGAATCTT-G-GCTTC-TCTGTGGCAATT-TATACTCTTC 354
Query 271 CTTCCTTATTTCATTGGATTGCTGTTTCTGGGTTTCATCAAAGGTATCGTTTTGTGCCCA 330
|||||||||||| ||| || ||| |||| ||| |||| |||||||||||||| |||||
Sbjct 355 ATTCCTTATTTCACTGGTTTACTGCTTCTCGGTGTCATTAAAGGTATCGTTTTATGCCCG 414
Query 331 CTCGTATGTCTCGTTGTGACTATAGGCAACTCCGCGGTCATACTGA-GTCTTCTACCCGT 389
|| |||| || |||| |||| || ||||| || |||| || | | ||| |||| ||
Sbjct 415 CTTATATGCCTTACTGTGGCTATTGGAAACTCTGCAATCAT-CTTAGGCCTTTTACCAGT 473
Query 390 TCACATCG-TTTGGACTTTCTATTCAATCGTGAGTGCCAAACAAG-TAGGACCAATCTTG 447
||| || |||||||| | ||||| || | |||||| |||| || ||||||||||| ||
Sbjct 474 ACAC-GCGATTTGGACTCTATATTCGATAGCGAGTGCTAAAC-AGTTAGGACCAATCCTG 531
Query 448 AAGATCTTTCTATGCTTATGTC-TTCCTGC-TGCCATCATTCTCTGGCCTATTGTTGGTA 505
||||||||||| || ||||| | ||||| | || |||||||||||| | | ||| |||
Sbjct 532 AAGATCTTTCTGTGTTTATG-CGTTCCT-CTTGGTGTCATTCTCTGGCTTGTGGTTAGTA 589
Query 506 TTTTAGGGAGTGTT-TTGGGAGGAGCT-TTATATGG-TTT-TTTCTCCCCAAT-TTTCGC 560
| ||||| |||||| || ||||||||| || ||||| ||| ||||| ||||| ||| ||
Sbjct 590 TCTTAGGAAGTGTTCTT-GGAGGAGCTATT-TATGGATTTCTTTCT--CCAATATTT-GC 644
Query 561 CACTTTTGATGCTGTTGGTGAAGGCAAGCCTTA-CCAGTTTTTCCATTGCTTTTATGATG 619
||||| ||||||||||||||||| ||| || | || |||||||||||||||||||||||
Sbjct 645 TACTTTCGATGCTGTTGGTGAAGGGAAGTCTAATCC-GTTTTTCCATTGCTTTTATGATG 703
Query 620 GAACTTGGAGCACCATCCAACGCAGCTTCACCGTTGTCCGGGATTTTAAAGATGTTTGCT 679
||||||||||||| | ||| |||| ||||||||||| | |||||||||||||||||||
Sbjct 704 GAACTTGGAGCACTGTTCAAGGCAGTTTCACCGTTGTTTGTGATTTTAAAGATGTTTGCT 763
Query 680 TTCACTCATACTTCTCACTCATGGATGAGCTTA-AACAA--AGCTGCCCGGATCG-CAAA 735
||||||| ||||| || | |||||||| ||| |||| | |||| | | || ||
Sbjct 764 TTCACTCCTACTTTTCTTTTATGGATGATCTTCGAACATCTA-CTGC--GAACCGTCAC- 819
Query 736 TATTATGAAATAAGGCTACTTCAACTTCCAGGGGCTTTGGTAGTTTCAGTTCTCGGGGTT 795
||||||||||||||| |||||||| ||||||| ||| || | ||| | |||||||| ||
Sbjct 820 TATTATGAAATAAGGTTACTTCAAATTCCAGGTGCTGTGATTGTTGCGGTTCTCGGAATT 879
Query 796 CTTGTTGATTTACCGGTGATCTCACT-TGTAGCCATA-TGCAAAAGCCCTTACATGTTGT 853
||||||||||| || ||||| ||||| | |||| || || |||||||| ||||||||||
Sbjct 880 CTTGTTGATTTCCCAGTGATTTCACTCT-TAGC-ATTGTGTAAAAGCCCGTACATGTTGT 937
Query 854 TCAAAGGATGGCACCGTTTGTTTCATGACCTAATTGGACGGGAAGGTCCATTCTTGGAGA 913
||||||| |||||||||||||||||||| || |||||||| |||||||| |||||||| |
Sbjct 938 TCAAAGGGTGGCACCGTTTGTTTCATGATCTCATTGGACGTGAAGGTCCTTTCTTGGAAA 997
Query 914 CAATGTGTGTCCCCATTGCAGGCCTCGCGATCTTACTCTGGCCTTTGGCTGTCACGGGCG 973
||||||||||||| || || ||||| | |||||||||||||||||| ||||| || |
Sbjct 998 CAATGTGTGTCCCAATCGCTGGCCTTGTGATCTTACTCTGGCCTTTAGCTGTTGTTGGAG 1057
Query 974 CGGTTATT-GGATCAGTTGTCTCGAGTATCTTCCTTGGTGCTTATG-CAGGAGTAGTCTC 1031
| ||| || ||||| || ||||| ||| |||||||||||||||||| | || ||||||||
Sbjct 1058 CAGTT-TTAGGATCCGTGGTCTCTAGTGTCTTCCTTGGTGCTTATGGC-GGTGTAGTCTC 1115
Query 1032 ATATCAGGAATCATCGTT-TTACTAT-GGACTCTGCT-TCATAGTTGCATCTGTGTCCAT 1088
||||||||| |||||||| || || | || ||||||| | | ||||| ||||| || ||
Sbjct 1116 ATATCAGGAGTCATCGTTCTT-CT-TCGGTCTCTGCTATGTT-GTTGCTTCTGTTTCTAT 1172
Query 1089 TTACGACGAGTATAGCACCGATATACTTGACT-TGCCTGAAGGATCTTGTTTTCCAAGGC 1147
|||||| |||||||||| |||| | ||||| | |||||||||| ||||| ||||| ||||
Sbjct 1173 TTACGATGAGTATAGCAACGATGTTCTTGA-TATGCCTGAAGGTTCTTGCTTTCCCAGGC 1231
Query 1148 CGAA-ATATCGAAGAGAGGAAGAGGAAC-CAAC-AC--CTTTTTCTGGTCCTATACCAAG 1202
| || |||||||||| | ||||||| | | | || | ||||||||| | | ||||
Sbjct 1232 C-AATATATCGAAGAAACGAAGAGGG-CGCTAGTACGGCATTTTCTGGTGGTCTTTCAAG 1289
Query 1203 ATT-AGGCTC-TGTCAAGA-ACGCGTC-ATCGATGAGAGCAGGATCAGTCAGAGTCCCTA 1258
| | ||| | |||||| | | || ||| | ||| | ||||||| || || ||| |
Sbjct 1290 ACCGAA-CTCCT-TCAAGACAA-C-TCCATCAA-GAG-G-AGGATCAAACAAAGGCCCAA 1342
Query 1259 TGATTGATATTAAGCCTCTCGATCTGTTGAATGAGCTCT-TT-GTGGAATGTAGAAGATT 1316
||||||| | || || || ||||| ||| | | ||||| || ||||||||||| |
Sbjct 1343 TGATTGACCTGAAACCGCTTGATCTTTTGGA-G-GCTCTATTTGTGGAATGTAGGCGGCA 1400
Query 1317 TGGAGAAATTTTGGCGACAAAAGG-ACTGATAAATTCGAAAGATATCGAAGAAGCGAGAT 1375
||||| ||| ||| || ||||| | | |||||||| ||||| || |||||||| | ||
Sbjct 1401 CGGAGAGATTATGGTAACGAAAGGGATT-ATAAATTCAAAAGACATTGAAGAAGCTAAAT 1459
Query 1376 CTAGTAAAGGCAGCCAAGTGATCAGCGTTGGTTTACCGGCTTATTCACTTCTTTATGAGA 1435
|||| |||||||| |||||||||||| |||| ||||| |||||||| |||||| | |||
Sbjct 1460 CTAGCAAAGGCAGTCAAGTGATCAGCTTTGGCTTACCTGCTTATTCTCTTCTTCACGAGC 1519
Query 1436 TTCTACGCTCCGTCAAAGCCAATTGTGCCGGCTTGTTACTAAGTGACGGTGTAACTGAAA 1495
|| ||||||| ||||| | || | |||| || ||||| ||||||||||||| || |
Sbjct 1520 TTTTACGCTCTATCAAATCTAACTCCACCGGTTTATTACTCGGTGACGGTGTAACGGAGA 1579
Query 1496 TAACTGTCATGAA-CCGACCAAAAGA--CGTCTTCTTTGATTGGTTTCTGCATCCGTTGT 1552
||||| || ||| ||| |||||||| ||| || ||||||||||||||| ||||||| |
Sbjct 1580 TAACTACCA-GAAACCGCCCAAAAGATGCGT-TT-TTTGATTGGTTTCTGAATCCGTTTT 1636
Query 1553 TGATACT-AAAGGAGCAAAT-GAAAGCTACAAACTTGTCCGAGGAAGAAGAAGAGTACCT 1610
|||| || |||| | || || ||| ||| ||||| | |||||||||||||||||||| ||
Sbjct 1637 TGATCCTTAAAG-ACCAGATCGAA-GCTGCAAACCTATCCGAGGAAGAAGAAGAGTATCT 1694
Query 1611 CGG-AAGATTAGTCTTGCTATTTGGAGATCCAGAGAGGCT-AAAGAGCTCGAATGCC-AT 1667
|| || ||| || || || ||||||||| ||||||| || ||| ||||| | || |
Sbjct 1695 TGGTAA-ATTGGTATTACTCTTTGGAGATTCAGAGAGACTTAAA-AGCTCCATTGTTGAA 1752
Query 1668 TTCCGCGTCTCCTCCTCTTACCGAGCGT-A-AAAGAGCCGAACTCGATGCCTTTGCTCGC 1725
| | | ||||||||||| || || | | | ||| ||||||||| |||||||||||||||
Sbjct 1753 T-CTGAATCTCCTCCTCTAACTGAAC-TCAGAAA-AGCCGAACTTGATGCCTTTGCTCGC 1809
Query 1726 AGGATGCAAGGGCTAACGAAAACGGTATCAAGATATCCAACATTTC-GTCGACATTTTGT 1784
||| | ||||| |||| ||| | |||||||||||||||||||| | | ||||||||||
Sbjct 1810 AGGCTTCAAGGATTAACCAAATCAGTATCAAGATATCCAACATT-CAGAAGACATTTTGT 1868
Query 1785 GGCATTAGTGAAGAAACTATC 1805
|| | |||| |||||||||||
Sbjct 1869 GGAACTAGTCAAGAAACTATC 1889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105722347770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5