BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484531
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27415.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1134 0.0
AT3G27416.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 798 0.0
> AT3G27415.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:10147066-10147992
FORWARD LENGTH=927
Length=927
Score = 1134 bits (614), Expect = 0.0
Identities = 776/853 (91%), Gaps = 16/853 (2%)
Strand=Plus/Plus
Query 1 ACTAGCCATGCAAGGATCATTAGAAAATGGATGTAATTAAATTACAAATAGACCCTTCGA 60
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 3 ACTAGCCATGCAAGGATCATTAGAAAATGAATGTGATTAAATTACAAATAGACCCTTCGA 62
Query 61 ATTATGAGAATCTCATGATGATTATTGTTATAGTGACTAAAGATTACATAAACATAAATA 120
| |||||||||||||| | ||||||||||| |||||||||||||||||||||||||||
Sbjct 63 ACAATGAGAATCTCATG--G-TTATTGTTATAATGACTAAAGATTACATAAACATAAATA 119
Query 121 ACACAAACTAAACATTTGTAACAACATCAAATATCCTAACCTCCATACTATGCACGAATT 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 120 ACACAAACTAAACATTTGTAACAACATCAAATATCCTAACCTCCGTACTATGCACGAATT 179
Query 181 TAACGTGTTAAAAAT-GGGACTGGAGCGTGAACTGTTTTAAAACAAAACCCAAAAAATTT 239
|||||||| |||||| ||| | |||| ||||||||||||| ||| |||||||| ||
Sbjct 180 TAACGTGTGAAAAATCGGGCC-GGAGAACAAACTGTTTTAAAATAAA-CCCAAAAA-TTG 236
Query 240 AAATATGATACGTATAATATAATCTTAAATGTAATATGAAATCTCCAAGTAAATA---GT 296
|||||||| |||||||||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct 237 AAATATGAAACGTATAATATAATCTTAAATGTAGTATGAAATCTCCAAGAAAATACTAGT 296
Query 297 AATCTTCAATCATATGAAGAAAAACCATGCAACGGCGGCGATAACAGAGCCGGAGATAGA 356
||| ||||||||||||||||||| |||||||||||| |||| ||||||||| |||| |||
Sbjct 297 AATATTCAATCATATGAAGAAAAGCCATGCAACGGCTGCGAGAACAGAGCCCGAGACAGA 356
Query 357 GATGACAAGCGATGAAGCTCTTGCCGTTGGAGACGAAGCTTCAGGGCCGTCACTGGCGCC 416
||| ||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 357 GATCACAAGCGATGAGGCTCCTGCCGCAGGAGCCGAAGCTTCAGGGCCGTCACTGGCGCC 416
Query 417 AGTTCCTTCGTCCGATGATGGAGACATGTCTGGAGTCGGAGCTGGCGGAGAGGAGGCGGT 476
|||||| || || || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 417 AGTTCCGTCATCGGAAGATGGAGACATTTCTGGAGTCGGAGCTGGCGGAGAGGAGGCGGT 476
Query 477 AGGTGCGTCGGACGAGCTTGTAGGACCTTCGGAAGAATCACCGGAGCTTGAGTCAGGGCT 536
||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AGGTGCGTCAGAGGAGCTGGTAGGACCTTCGGAAGAATCACCGGAGCTTGAGTCAGGGCT 536
Query 537 TGAAGCCGGAGTTTTGGCTGATGATGACTTCGGAGGCTTTGCGGAAGATGGGGAAGGGCT 596
|||||||||||||||||||||||||||||| |||| | | ||||||||||||||||||
Sbjct 537 TGAAGCCGGAGTTTTGGCTGATGATGACTTTGGAGA-TG-G-GGAAGATGGGGAAGGGCT 593
Query 597 TGGAGTTCCGGTGGAGTTTTTCTTGGCCATGGTCGGAGCAGCAGTAGGCGGTGAGGTTGG 656
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 594 TGGAGTTCCGGTGGAATTTTTCTTGGCCATGGTTGGAGCAGCTGTAGGCGGTGAGGTTGG 653
Query 657 AGCGGAGGCGGTGGGTGGTGATTTTGGGGATGCTGCGGCGGCAGGAGAAGGAGAGGTTGA 716
|||||||| ||||||| |||||||||||||||||||||| |||||||||||||| ||
Sbjct 654 GGCGGAGGCCGTGGGTG---ATTTTGGGGATGCTGCGGCGGCGGGAGAAGGAGAGGTAGA 710
Query 717 GTTCTTTTCGCCGTTGGCTTTCGGCGCGTTTGCCGATGTTGGAGGATCGGCAGCTAATAC 776
|||||||||||||||||||||||| |||||||||| ||||||||||||||| || || ||
Sbjct 711 GTTCTTTTCGCCGTTGGCTTTCGGTGCGTTTGCCGGTGTTGGAGGATCGGCGGCCAAGAC 770
Query 777 AGCCGTGACGGCTAATGCGGCCACGGCGAGAGATAGGAGCTTAAGTGTCACTGTCATTTT 836
|| |||| ||| || || |||||||||||||||||||| |||||||||| |||||||||
Sbjct 771 GGCGGTGATGGCCAAGGCAGCCACGGCGAGAGATAGGAGTTTAAGTGTCATTGTCATTTT 830
Query 837 GTCGTGAATGTGA 849
|| ||||||||||
Sbjct 831 GTGGTGAATGTGA 843
> AT3G27416.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:10147313-10147984
REVERSE LENGTH=672
Length=672
Score = 798 bits (432), Expect = 0.0
Identities = 547/602 (91%), Gaps = 9/602 (1%)
Strand=Plus/Minus
Query 251 GTATAATATAATCTTAAATGTAATATGAAATCTCCAAG-TAA-A-TAGTAATCTTCAATC 307
|||||||||||||||||||||| ||||||||||||||| || | ||||||| |||||||
Sbjct 672 GTATAATATAATCTTAAATGTAGTATGAAATCTCCAAGAAAATACTAGTAATATTCAATC 613
Query 308 ATATGAAGAAAAACCATGCAACGGCGGCGATAACAGAGCCGGAGATAGAGATGACAAGCG 367
|||||||||||| |||||||||||| |||| ||||||||| |||| |||||| |||||||
Sbjct 612 ATATGAAGAAAAGCCATGCAACGGCTGCGAGAACAGAGCCCGAGACAGAGATCACAAGCG 553
Query 368 ATGAAGCTCTTGCCGTTGGAGACGAAGCTTCAGGGCCGTCACTGGCGCCAGTTCCTTCGT 427
|||| |||| ||||| |||| ||||||||||||||||||||||||||||||||| || |
Sbjct 552 ATGAGGCTCCTGCCGCAGGAGCCGAAGCTTCAGGGCCGTCACTGGCGCCAGTTCCGTCAT 493
Query 428 CCGATGATGGAGACATGTCTGGAGTCGGAGCTGGCGGAGAGGAGGCGGTAGGTGCGTCGG 487
| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 492 CGGAAGATGGAGACATTTCTGGAGTCGGAGCTGGCGGAGAGGAGGCGGTAGGTGCGTCAG 433
Query 488 ACGAGCTTGTAGGACCTTCGGAAGAATCACCGGAGCTTGAGTCAGGGCTTGAAGCCGGAG 547
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 AGGAGCTGGTAGGACCTTCGGAAGAATCACCGGAGCTTGAGTCAGGGCTTGAAGCCGGAG 373
Query 548 TTTTGGCTGATGATGACTTCGGAGGCTTTGCGGAAGATGGGGAAGGGCTTGGAGTTCCGG 607
||||||||||||||||||| |||| | | |||||||||||||||||||||||||||||
Sbjct 372 TTTTGGCTGATGATGACTTTGGAGA-TG-G-GGAAGATGGGGAAGGGCTTGGAGTTCCGG 316
Query 608 TGGAGTTTTTCTTGGCCATGGTCGGAGCAGCAGTAGGCGGTGAGGTTGGAGCGGAGGCGG 667
|||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |
Sbjct 315 TGGAATTTTTCTTGGCCATGGTTGGAGCAGCTGTAGGCGGTGAGGTTGGGGCGGAGGCCG 256
Query 668 TGGGTGGTGATTTTGGGGATGCTGCGGCGGCAGGAGAAGGAGAGGTTGAGTTCTTTTCGC 727
|||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 255 TGGGTG---ATTTTGGGGATGCTGCGGCGGCGGGAGAAGGAGAGGTAGAGTTCTTTTCGC 199
Query 728 CGTTGGCTTTCGGCGCGTTTGCCGATGTTGGAGGATCGGCAGCTAATACAGCCGTGACGG 787
||||||||||||| |||||||||| ||||||||||||||| || || || || |||| ||
Sbjct 198 CGTTGGCTTTCGGTGCGTTTGCCGGTGTTGGAGGATCGGCGGCCAAGACGGCGGTGATGG 139
Query 788 CTAATGCGGCCACGGCGAGAGATAGGAGCTTAAGTGTCACTGTCATTTTGTCGTGAATGT 847
| || || |||||||||||||||||||| |||||||||| ||||||||||| ||||||||
Sbjct 138 CCAAGGCAGCCACGGCGAGAGATAGGAGTTTAAGTGTCATTGTCATTTTGTGGTGAATGT 79
Query 848 GA 849
||
Sbjct 78 GA 77
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43402303008
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5