BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484531 Length=889 Score E Sequences producing significant alignments: (Bits) Value AT3G27415.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1134 0.0 AT3G27416.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 798 0.0 > AT3G27415.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:10147066-10147992 FORWARD LENGTH=927 Length=927 Score = 1134 bits (614), Expect = 0.0 Identities = 776/853 (91%), Gaps = 16/853 (2%) Strand=Plus/Plus Query 1 ACTAGCCATGCAAGGATCATTAGAAAATGGATGTAATTAAATTACAAATAGACCCTTCGA 60 ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 3 ACTAGCCATGCAAGGATCATTAGAAAATGAATGTGATTAAATTACAAATAGACCCTTCGA 62 Query 61 ATTATGAGAATCTCATGATGATTATTGTTATAGTGACTAAAGATTACATAAACATAAATA 120 | |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||| Sbjct 63 ACAATGAGAATCTCATG--G-TTATTGTTATAATGACTAAAGATTACATAAACATAAATA 119 Query 121 ACACAAACTAAACATTTGTAACAACATCAAATATCCTAACCTCCATACTATGCACGAATT 180 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 120 ACACAAACTAAACATTTGTAACAACATCAAATATCCTAACCTCCGTACTATGCACGAATT 179 Query 181 TAACGTGTTAAAAAT-GGGACTGGAGCGTGAACTGTTTTAAAACAAAACCCAAAAAATTT 239 |||||||| |||||| ||| | |||| ||||||||||||| ||| |||||||| || Sbjct 180 TAACGTGTGAAAAATCGGGCC-GGAGAACAAACTGTTTTAAAATAAA-CCCAAAAA-TTG 236 Query 240 AAATATGATACGTATAATATAATCTTAAATGTAATATGAAATCTCCAAGTAAATA---GT 296 |||||||| |||||||||||||||||||||||| ||||||||||||||| ||||| || Sbjct 237 AAATATGAAACGTATAATATAATCTTAAATGTAGTATGAAATCTCCAAGAAAATACTAGT 296 Query 297 AATCTTCAATCATATGAAGAAAAACCATGCAACGGCGGCGATAACAGAGCCGGAGATAGA 356 ||| ||||||||||||||||||| |||||||||||| |||| ||||||||| |||| ||| Sbjct 297 AATATTCAATCATATGAAGAAAAGCCATGCAACGGCTGCGAGAACAGAGCCCGAGACAGA 356 Query 357 GATGACAAGCGATGAAGCTCTTGCCGTTGGAGACGAAGCTTCAGGGCCGTCACTGGCGCC 416 ||| ||||||||||| |||| ||||| |||| ||||||||||||||||||||||||||| Sbjct 357 GATCACAAGCGATGAGGCTCCTGCCGCAGGAGCCGAAGCTTCAGGGCCGTCACTGGCGCC 416 Query 417 AGTTCCTTCGTCCGATGATGGAGACATGTCTGGAGTCGGAGCTGGCGGAGAGGAGGCGGT 476 |||||| || || || ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 417 AGTTCCGTCATCGGAAGATGGAGACATTTCTGGAGTCGGAGCTGGCGGAGAGGAGGCGGT 476 Query 477 AGGTGCGTCGGACGAGCTTGTAGGACCTTCGGAAGAATCACCGGAGCTTGAGTCAGGGCT 536 ||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 477 AGGTGCGTCAGAGGAGCTGGTAGGACCTTCGGAAGAATCACCGGAGCTTGAGTCAGGGCT 536 Query 537 TGAAGCCGGAGTTTTGGCTGATGATGACTTCGGAGGCTTTGCGGAAGATGGGGAAGGGCT 596 |||||||||||||||||||||||||||||| |||| | | |||||||||||||||||| Sbjct 537 TGAAGCCGGAGTTTTGGCTGATGATGACTTTGGAGA-TG-G-GGAAGATGGGGAAGGGCT 593 Query 597 TGGAGTTCCGGTGGAGTTTTTCTTGGCCATGGTCGGAGCAGCAGTAGGCGGTGAGGTTGG 656 ||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 594 TGGAGTTCCGGTGGAATTTTTCTTGGCCATGGTTGGAGCAGCTGTAGGCGGTGAGGTTGG 653 Query 657 AGCGGAGGCGGTGGGTGGTGATTTTGGGGATGCTGCGGCGGCAGGAGAAGGAGAGGTTGA 716 |||||||| ||||||| |||||||||||||||||||||| |||||||||||||| || Sbjct 654 GGCGGAGGCCGTGGGTG---ATTTTGGGGATGCTGCGGCGGCGGGAGAAGGAGAGGTAGA 710 Query 717 GTTCTTTTCGCCGTTGGCTTTCGGCGCGTTTGCCGATGTTGGAGGATCGGCAGCTAATAC 776 |||||||||||||||||||||||| |||||||||| ||||||||||||||| || || || Sbjct 711 GTTCTTTTCGCCGTTGGCTTTCGGTGCGTTTGCCGGTGTTGGAGGATCGGCGGCCAAGAC 770 Query 777 AGCCGTGACGGCTAATGCGGCCACGGCGAGAGATAGGAGCTTAAGTGTCACTGTCATTTT 836 || |||| ||| || || |||||||||||||||||||| |||||||||| ||||||||| Sbjct 771 GGCGGTGATGGCCAAGGCAGCCACGGCGAGAGATAGGAGTTTAAGTGTCATTGTCATTTT 830 Query 837 GTCGTGAATGTGA 849 || |||||||||| Sbjct 831 GTGGTGAATGTGA 843 > AT3G27416.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:10147313-10147984 REVERSE LENGTH=672 Length=672 Score = 798 bits (432), Expect = 0.0 Identities = 547/602 (91%), Gaps = 9/602 (1%) Strand=Plus/Minus Query 251 GTATAATATAATCTTAAATGTAATATGAAATCTCCAAG-TAA-A-TAGTAATCTTCAATC 307 |||||||||||||||||||||| ||||||||||||||| || | ||||||| ||||||| Sbjct 672 GTATAATATAATCTTAAATGTAGTATGAAATCTCCAAGAAAATACTAGTAATATTCAATC 613 Query 308 ATATGAAGAAAAACCATGCAACGGCGGCGATAACAGAGCCGGAGATAGAGATGACAAGCG 367 |||||||||||| |||||||||||| |||| ||||||||| |||| |||||| ||||||| Sbjct 612 ATATGAAGAAAAGCCATGCAACGGCTGCGAGAACAGAGCCCGAGACAGAGATCACAAGCG 553 Query 368 ATGAAGCTCTTGCCGTTGGAGACGAAGCTTCAGGGCCGTCACTGGCGCCAGTTCCTTCGT 427 |||| |||| ||||| |||| ||||||||||||||||||||||||||||||||| || | Sbjct 552 ATGAGGCTCCTGCCGCAGGAGCCGAAGCTTCAGGGCCGTCACTGGCGCCAGTTCCGTCAT 493 Query 428 CCGATGATGGAGACATGTCTGGAGTCGGAGCTGGCGGAGAGGAGGCGGTAGGTGCGTCGG 487 | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 492 CGGAAGATGGAGACATTTCTGGAGTCGGAGCTGGCGGAGAGGAGGCGGTAGGTGCGTCAG 433 Query 488 ACGAGCTTGTAGGACCTTCGGAAGAATCACCGGAGCTTGAGTCAGGGCTTGAAGCCGGAG 547 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 432 AGGAGCTGGTAGGACCTTCGGAAGAATCACCGGAGCTTGAGTCAGGGCTTGAAGCCGGAG 373 Query 548 TTTTGGCTGATGATGACTTCGGAGGCTTTGCGGAAGATGGGGAAGGGCTTGGAGTTCCGG 607 ||||||||||||||||||| |||| | | ||||||||||||||||||||||||||||| Sbjct 372 TTTTGGCTGATGATGACTTTGGAGA-TG-G-GGAAGATGGGGAAGGGCTTGGAGTTCCGG 316 Query 608 TGGAGTTTTTCTTGGCCATGGTCGGAGCAGCAGTAGGCGGTGAGGTTGGAGCGGAGGCGG 667 |||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||| | Sbjct 315 TGGAATTTTTCTTGGCCATGGTTGGAGCAGCTGTAGGCGGTGAGGTTGGGGCGGAGGCCG 256 Query 668 TGGGTGGTGATTTTGGGGATGCTGCGGCGGCAGGAGAAGGAGAGGTTGAGTTCTTTTCGC 727 |||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 255 TGGGTG---ATTTTGGGGATGCTGCGGCGGCGGGAGAAGGAGAGGTAGAGTTCTTTTCGC 199 Query 728 CGTTGGCTTTCGGCGCGTTTGCCGATGTTGGAGGATCGGCAGCTAATACAGCCGTGACGG 787 ||||||||||||| |||||||||| ||||||||||||||| || || || || |||| || Sbjct 198 CGTTGGCTTTCGGTGCGTTTGCCGGTGTTGGAGGATCGGCGGCCAAGACGGCGGTGATGG 139 Query 788 CTAATGCGGCCACGGCGAGAGATAGGAGCTTAAGTGTCACTGTCATTTTGTCGTGAATGT 847 | || || |||||||||||||||||||| |||||||||| ||||||||||| |||||||| Sbjct 138 CCAAGGCAGCCACGGCGAGAGATAGGAGTTTAAGTGTCATTGTCATTTTGTGGTGAATGT 79 Query 848 GA 849 || Sbjct 78 GA 77 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43402303008 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5