BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484543
Length=3088
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27530.1 | Symbols: GC6, MAG4 | golgin candidate 6 | chr3:10... 4802 0.0
> AT3G27530.1 | Symbols: GC6, MAG4 | golgin candidate 6 | chr3:10193569-10200013
REVERSE LENGTH=3148
Length=3148
Score = 4802 bits (2600), Expect = 0.0
Identities = 2947/3112 (95%), Gaps = 33/3112 (1%)
Strand=Plus/Plus
Query 1 ATCGAACGGTTTATCAGCTCTTCTGACTTTGCTTGAACAGATCGGTCAGGT--------- 51
||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 8 ATCGAACGGTTTATCAGCTCTTCTGACTTTGCTTGAATAGATCGGTCAGGTGAAAAACAC 67
Query 52 --GA-A---TGTGAAGAAGAGATCGCTGCGATCTATAACGGTTCCATTGGCTGGA-GATT 104
|| | ||||||||||||||||||||||||||| |||||||||||| ||||| || |
Sbjct 68 GAGAGACTCTGTGAAGAAGAGATCGCTGCGATCTATCACGGTTCCATTGCCTGGAGGA-T 126
Query 105 TCATCTTCCTTGTTTTGATCTTGTTCGTAT-TACATAAGTCTGTGTAAATTTTTCGTGGC 163
|| ||||||||||||||||||||||| ||| |||| ||||||||| | |||| ||||
Sbjct 127 TCTTCTTCCTTGTTTTGATCTTGTTCTTATCAACAT-AGTCTGTGT-GA-TTTTATTGGC 183
Query 164 TA-AA-GAGATATGGATTTGGCATCCCGTTATAAGGGGGTTGTTGGAATGGTTTTTGGCG 221
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 TATAACGAGATATGGATTTGGCATCCCGTTATAAGGGGGTTGTTGGAATGGTTTTTGGCG 243
Query 222 ACAATCAGTCTTCGAATGAAGACAGTTACATTCAACGCCTGCTGGACCGTATAAGTAATG 281
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 244 ACAATCAATCTTCTAATGAAGACAGTTACATTCAACGCCTGCTGGATCGTATAAGTAATG 303
Query 282 GTACCTTGCCTGACGATAGGAGAACTGCTATAGTAGAACTTCAGTCTGTTGTAGCAGAAA 341
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 304 GTACCTTGCCTGACGATAGGAGAACTGCTATAGTAGAACTTCAGTCTGTTGTCGCAGAAA 363
Query 342 GTAATGCTGCTCAATTAGCTTTTGGAGCAGCCGGATTTCCTGTGATAATGGGCATCCTAA 401
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 364 GTAATGCTGCTCAATTAGCTTTTGGAGCAGCCGGATTTCCTGTGATAGTGGGCATCCTAA 423
Query 402 AGGACCAGCGGGATGATGTTGAAATGGTTCGAGGTGCTTTAGAAACTCTTCTTGGCGCTC 461
|||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 AGGATCAACGAGATGATCTTGAAATGGTTCGAGGTGCTTTAGAAACTCTTCTTGGCGCTC 483
Query 462 TAACGCCAATCGATCATGCAAGGGTACAGAAGACTGAAGTCCATGCAGCTCTTATGAACT 521
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 484 TAACGCCAATCGATCATGCAAGGGCACAGAAGACTGAAGTCCAGGCAGCTCTTATGAACT 543
Query 522 CCGACTTGCTCTCCCGTGAAGCTGAAAATATCACTCTTCTTTTAAGTTTGCTGGAGGAAG 581
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 544 CCGACTTGCTCTCCCGTGAAGCTGAAAATATCACTCTTCTTTTGAGTTTGCTGGAGGAAG 603
Query 582 AAGACTTTTATGTTCGATATTACACTCTTCAGATTTTGACAGCTCTGCTTATGAATTCTC 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 604 AAGACTTTTATGTTCGATATTACACTCTTCAGATTTTGACAGCTCTGCTTATGAACTCTC 663
Query 642 AAAACAGGTTGCAGGAAGCTATTTTGACAACTCCTCGCGGCATAACTCGACTCATGGACA 701
|||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||| |
Sbjct 664 AAAACAGGTTGCAGGAAGCTATTTTGACCACTCCTCGCGGTATTACTCGGCTCATGGATA 723
Query 702 TGCTAATGGATAGAGAGGTAATCCGGAACGAGGCTTTGTTGCTTCTTACGCACTTGACTC 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TGCTAATGGATAGAGAGGTAATCCGGAACGAGGCTTTGTTGCTTCTTACGCACTTGACTC 783
Query 762 GTGAAGCAGAGGAGATCCAAAAAATCGTTGTCTTTGAAGGTGCATTTGAAAAGATTTTTA 821
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 784 GTGAAGCAGAGGAGATCCAAAAAATTGTTGTCTTTGAAGGTGCTTTTGAAAAGATTTTTA 843
Query 822 GCATCATTAAGGAAGAAGGGGGGTCAGATGGCGATGTGGTTGTGCAGGACTGTCTGGAGT 881
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 GCATCATTAAGGAGGAAGGGGGGTCAGATGGCGATGTGGTTGTGCAGGACTGTCTGGAGT 903
Query 882 TGTTGAACAATCTTCTTCGCAGCAGTTCATCAAACCAGATACTACTAAGGGAGACCATGG 941
||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||
Sbjct 904 TGTTGAACAATCTTCTTCGCAGCAGTTCATCTAACCAGATATTACTAAGGGAAACCATGG 963
Query 942 GTTTTGAACCGATCATTTCAATTCTAAAACTGCGAGGGATTACATATAAGTTCACCAAGC 1001
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 964 GTTTTGAACCTATCATTTCAATTCTAAAACTGCGAGGGATTACATATAAGTTCACCCAGC 1023
Query 1002 AAAAGACTGTTAATCTACTTAGTGCACTGGAGACAATTAATATGCTGATCATGGGAGGTG 1061
|||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |||
Sbjct 1024 AAAAGACTGTTAATCTGCTTAGTGCACTGGAGACCATCAATATGCTGATCATGGGACGTG 1083
Query 1062 CAGACACGGAGCCTGGAAAAGATTCAAACAAGCTGGCAAATAGAACAGTTTTAGTTCAGA 1121
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1084 CAGACACGGAGCCTGGAAAAGATTCAAACAAGCTGGCAAATCGAACAGTTTTAGTTCAGA 1143
Query 1122 AAAAACTGCTAGACCACCTTCTGATGTTAGGTGTTGAAAGCCAATGGGCGCCTGTTGCTG 1181
|||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1144 AAAAACTGCTAGACTACCTACTGATGTTGGGTGTTGAAAGCCAATGGGCGCCTGTTGCTG 1203
Query 1182 TTCGCTGCATGACATTTAAATGCATTGGAGATCTAATTGATGGACACCCCAAGAACCGTG 1241
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1204 TTCGCTGCATGACATTTAAATGCATTGGAGATCTAATTGATGGACATCCTAAGAACCGTG 1263
Query 1242 ATATCCTTGCTAGCAAAGTTCTTGGTGAAGATCGGCAAGTAGAACCTGCACTCAATTCTA 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 ATATCCTTGCTAGCAAAGTTCTTGGTGAAGATCGGCAAGTAGAACCTGCACTCAATTCTA 1323
Query 1302 TCCTCAGGATCATTTTACAGACGTCCAATATTCAAGAGTTTGTTGCAGCTGATTACGTTT 1361
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1324 TCCTCCGGATCATTTTACAGACGTCCAGTATTCAAGAGTTTGTTGCAGCTGATTACGTTT 1383
Query 1362 TCAAGACGTTCTGTGAGAAAAATCCCGAGGGTCAAACAATGCTAGCTTCGACTTTAATAC 1421
||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1384 TCAAGACATTCTGTGAGAAAAATACTGAGGGTCAAACAATGCTAGCTTCGACTTTAATAC 1443
Query 1422 CTCAACCACATCCCACAGCCCGAGATCCTCTAGAAGATGATGTTCACATGTCATTTGGAA 1481
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1444 CTCAACCACATCCCACATCCCGAGATCATCTAGAAGATGATGTTCACATGTCATTTGGAA 1503
Query 1482 GTATGTTGTTACGAGGCCTTTGTTCTGGTGAAGCTGATGGTGATCTTGAGACATGTTGCA 1541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 GTATGTTGTTACGAGGCCTTTGTTCTGGTGAAGCTGATGGTGATCTTGAGACATGTTGCA 1563
Query 1542 GAGCTGCAAGCATTCTTTTTCATGTTGTGAAGGACAACCTTAAGTGCAAGGAAAAGGCTT 1601
|||||||||||||||||| ||||||||| |||||||| ||| |||||||||||||||||
Sbjct 1564 GAGCTGCAAGCATTCTTTCTCATGTTGTCAAGGACAATCTTCGGTGCAAGGAAAAGGCTT 1623
Query 1602 TGAAAATCGTACTTGAATCACCTATGCCTTCCATGGGAACTCCAGAGCCTCTCTTTCAGA 1661
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1624 TGAAAATCGTACTTGAATCACCGATGCCGTCCATGGGAACTCCAGAGCCTCTCTTTCAGA 1683
Query 1662 GGATTGTCAGATACCTGGCTGTTGCTTCTTCCATGAAAAGCAAAGATAAATCAAGCACAC 1721
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1684 GGATTGTCAGATACCTGGCTGTTGCTTCTTCCATGAAAAGCAAAGAGAAATCAAGCACAC 1743
Query 1722 TGGGGAAATCATATATTCAACAGATCATTCTAAAACTGCTTGTGACATGGACTGTTGATT 1781
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1744 TGGGGAAATCATATATTCAACAGATCATTTTAAAACTGCTGGTGACATGGACTGTTGATT 1803
Query 1782 GTCCGGCTGCAGTTCAGTACTTTTTAGATTCTCGCCACCACCTAACGTTTTTGCTCGAGC 1841
||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1804 GTCCGACTGCAGTTCAGTGCTTTTTAGATTCCCGCCACCACCTAACGTTTTTGCTCGAGC 1863
Query 1842 TGGTAACAGACCCAGCTGCAACAGTTTGCATAAGGGGATTGGCGTCTATTCTATTGGGAG 1901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1864 TGGTAACAGACCCAGCTGCAACAGTTTGCATAAGGGGATTGGCGTCTATTCTATTGGGAG 1923
Query 1902 AATGCGTCATTTACAATAAATCAATTGAGAATGGTAAAGATG-TTTTTGCTGTAGTTGAT 1960
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1924 AATGCGTCATTTACAATAAATCAATTGAGAATGGTAAAGATGCTTTTT-CTGTAGTTGAT 1982
Query 1961 GCTGTGGGCCAGAAGATGGGGCTTACATCATACTTCTCGAATTTTGAAGAGATGCAGAAC 2020
||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 1983 GCTGTGGGCCAGAAGATGGGGCTGACATCATACTTCTCAAAGTTTGAAGAGATGCAGAAC 2042
Query 2021 AGCTTCATCTTCTCTACCTCCAAGAAACCTCAACAGGGTTATAAACCGTTGACAAGAACA 2080
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2043 AGCTTCATCTTCTCTCCCTCCAAGAAACCTCCACAGGGTTATAAACCGTTGACAAGAACA 2102
Query 2081 GCCATGCCTAGTGAAGCCGAGATTAATGAGGCGGATGGGGCAGATGAGATGGTTAGAGGG 2140
||| ||| |||||||||||||||||||||| ||||| || |||||| ||||||| ||||
Sbjct 2103 CCCACGCCGAGTGAAGCCGAGATTAATGAGGTGGATGAGGTAGATGAAATGGTTAAAGGG 2162
Query 2141 AATGAGGATCACCCAATGCTCTTGTCTTTGTTTGATGCTAGTTTCATAGGCTTAGTGAAG 2200
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2163 AATGAGGATCACCCAATGCTCTTATCTTTGTTTGATGCTAGTTTCATAGGCTTAGTGAAG 2222
Query 2201 AGCCTGGAAGGCAACATCAGAGAGAGAATAGTGGAGGTGTATAGTCGGCCAAAAAGTGAG 2260
||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 2223 AGCTTGGAAGGTAACATCAGAGAAAGAATCGTGGATGTGTATAGTCGGCCAAAAAGTGAG 2282
Query 2261 GTGGCTGTAGTACCAGCAGATTTGGAGCAGAAGAGCGGAGAAACCGAGAAAGACTACATC 2320
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2283 GTGGCTGTAGTACCAGCAGATTTGGAGCAGAAGAGCGGAGAAAATGAGAAAGACTACATC 2342
Query 2321 AACCGCTTGAAAGCCTTTATAGAGAAACAGTGCTCGGAAATTCAGAACCTCCTAGCTCGT 2380
|||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 2343 AACCGCTTGAAAGCCTTTATAGAGAAACAGTGCTCGGAGATTCAGAACCTTCTTGCTCGA 2402
Query 2381 AACGCTGCTTTGGCAGAAGATGTAGCTAGCTCTGGCAGGAATGAGCAATCTCAAGGATCA 2440
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 2403 AACGCTGCTTTGGCAGAAGACGTAGCTAGCTCTGGCAGGAACGAGCAATCTCAAGGATCA 2462
Query 2441 GAGCAAAGAGCAAGTACAGTAATGGACAAGGTTCAGATGGAAAGCATCAGGCGAGAACTT 2500
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2463 GAGCAAAGAGCAAGTACAGTAATGGACAAAGTTCAGATGGAAAGCATCAGACGAGAACTC 2522
Query 2501 CAGGAGACATCTCAGCGTTTAGAGACGGTTAAAGCTGAAAAAGTGAAGATCGAATCCGAG 2560
|| || |||||||||||||||||||| || || |||||||||| |||||||| || |||
Sbjct 2523 CAAGAAACATCTCAGCGTTTAGAGACAGTGAAGGCTGAAAAAGCCAAGATCGAGTCTGAG 2582
Query 2561 GCATCAAGTTACAAGAACATGGCTGCGAAACTTGAGT-CGGATCTAAAAAGCCTATCGGA 2619
||||||||| |||||||||||||||| |||||||||| || | ||||||||| |||||||
Sbjct 2583 GCATCAAGTAACAAGAACATGGCTGCAAAACTTGAGTTCG-ACCTAAAAAGCTTATCGGA 2641
Query 2620 TGCATACAACAGTCTCGAACAAGCGAATTACCACCTTGAGCAGGAAGTGAAATCCTTGAA 2679
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2642 TGCATACAACAGTCTAGAACAGGCGAATTACCATCTTGAGCAGGAAGTGAAATCCTTGAA 2701
Query 2680 AGGAGGAGA-AGGTCCCATGGAGGTTCCTGATATAGAAGCCATTAAGGAAGAAGTGAGAA 2738
||||||||| || ||||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct 2702 AGGAGGAGAGAG-TCCCATGCAGTTTCCTGATATAGAAGCCATCAAGGAAGAAGTGAGAA 2760
Query 2739 AAGAAGCTCAGAAAGAGAGCGAAGATGAATTAAACGACTTGTTAGTATGTTTGGGACAAG 2798
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 2761 AAGAAGCTCAGAAAGAGAGCGAAGACGAGTTAAATGACTTGTTAGTATGTTTGGGACAAG 2820
Query 2799 AGGAGAGCAAGGTCGAAAAACTAAGCGCGAAGCTGATAGAATTAGGAGTTGATGTTGATA 2858
|||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2821 AGGAAAGCAAAGTCGAGAAACTAAGCGCGAAGCTGATAGAATTAGGAGTTGATGTTGATA 2880
Query 2859 AGCTTTTAGAGGATATTGGGGACGAATCAGAAGCTCAAGCGGAATCTGAAGAAGACTGAC 2918
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2881 AGCTTTTAGAGGATATTGGAGACGAATCAGAAGCTCAAGCGGAATCTGAAGAAGACTGAC 2940
Query 2919 CATTGAACAAGTAGTAGAGATTTAATGTCCTCTAAAATGCTCTCTTCATCAGGTAATGGA 2978
|||||||||||| |||||||||| || |||||||||||||||||| ||||||| ||||||
Sbjct 2941 CATTGAACAAGTTGTAGAGATTTTATATCCTCTAAAATGCTCTCT-CATCAGGGAATGGA 2999
Query 2979 ACTTGTACAGTCCTGGGTGGTTTACTTT-GATGTTTGACAATTCTCGTTGCTTAATCTTT 3037
|||||||||||| |||||| |||| ||| ||| ||||||||||||| |||||||||||||
Sbjct 3000 ACTTGTACAGTCTTGGGTGATTTA-TTTCGATATTTGACAATTCTCTTTGCTTAATCTTT 3058
Query 3038 TAGTTATAACTCTTTAAATTATCTACCAA-CTTCTTAGAGTGCTCGAAACAT 3088
||||||||||||||||| ||||||||||| ||||||||| |||| |||||||
Sbjct 3059 TAGTTATAACTCTTTAATTTATCTACCAAACTTCTTAGATTGCTTGAAACAT 3110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 153561012523
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5