BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484543 Length=3088 Score E Sequences producing significant alignments: (Bits) Value AT3G27530.1 | Symbols: GC6, MAG4 | golgin candidate 6 | chr3:10... 4802 0.0 > AT3G27530.1 | Symbols: GC6, MAG4 | golgin candidate 6 | chr3:10193569-10200013 REVERSE LENGTH=3148 Length=3148 Score = 4802 bits (2600), Expect = 0.0 Identities = 2947/3112 (95%), Gaps = 33/3112 (1%) Strand=Plus/Plus Query 1 ATCGAACGGTTTATCAGCTCTTCTGACTTTGCTTGAACAGATCGGTCAGGT--------- 51 ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 8 ATCGAACGGTTTATCAGCTCTTCTGACTTTGCTTGAATAGATCGGTCAGGTGAAAAACAC 67 Query 52 --GA-A---TGTGAAGAAGAGATCGCTGCGATCTATAACGGTTCCATTGGCTGGA-GATT 104 || | ||||||||||||||||||||||||||| |||||||||||| ||||| || | Sbjct 68 GAGAGACTCTGTGAAGAAGAGATCGCTGCGATCTATCACGGTTCCATTGCCTGGAGGA-T 126 Query 105 TCATCTTCCTTGTTTTGATCTTGTTCGTAT-TACATAAGTCTGTGTAAATTTTTCGTGGC 163 || ||||||||||||||||||||||| ||| |||| ||||||||| | |||| |||| Sbjct 127 TCTTCTTCCTTGTTTTGATCTTGTTCTTATCAACAT-AGTCTGTGT-GA-TTTTATTGGC 183 Query 164 TA-AA-GAGATATGGATTTGGCATCCCGTTATAAGGGGGTTGTTGGAATGGTTTTTGGCG 221 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 TATAACGAGATATGGATTTGGCATCCCGTTATAAGGGGGTTGTTGGAATGGTTTTTGGCG 243 Query 222 ACAATCAGTCTTCGAATGAAGACAGTTACATTCAACGCCTGCTGGACCGTATAAGTAATG 281 ||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 244 ACAATCAATCTTCTAATGAAGACAGTTACATTCAACGCCTGCTGGATCGTATAAGTAATG 303 Query 282 GTACCTTGCCTGACGATAGGAGAACTGCTATAGTAGAACTTCAGTCTGTTGTAGCAGAAA 341 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 304 GTACCTTGCCTGACGATAGGAGAACTGCTATAGTAGAACTTCAGTCTGTTGTCGCAGAAA 363 Query 342 GTAATGCTGCTCAATTAGCTTTTGGAGCAGCCGGATTTCCTGTGATAATGGGCATCCTAA 401 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 364 GTAATGCTGCTCAATTAGCTTTTGGAGCAGCCGGATTTCCTGTGATAGTGGGCATCCTAA 423 Query 402 AGGACCAGCGGGATGATGTTGAAATGGTTCGAGGTGCTTTAGAAACTCTTCTTGGCGCTC 461 |||| || || |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 424 AGGATCAACGAGATGATCTTGAAATGGTTCGAGGTGCTTTAGAAACTCTTCTTGGCGCTC 483 Query 462 TAACGCCAATCGATCATGCAAGGGTACAGAAGACTGAAGTCCATGCAGCTCTTATGAACT 521 |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 484 TAACGCCAATCGATCATGCAAGGGCACAGAAGACTGAAGTCCAGGCAGCTCTTATGAACT 543 Query 522 CCGACTTGCTCTCCCGTGAAGCTGAAAATATCACTCTTCTTTTAAGTTTGCTGGAGGAAG 581 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 544 CCGACTTGCTCTCCCGTGAAGCTGAAAATATCACTCTTCTTTTGAGTTTGCTGGAGGAAG 603 Query 582 AAGACTTTTATGTTCGATATTACACTCTTCAGATTTTGACAGCTCTGCTTATGAATTCTC 641 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 604 AAGACTTTTATGTTCGATATTACACTCTTCAGATTTTGACAGCTCTGCTTATGAACTCTC 663 Query 642 AAAACAGGTTGCAGGAAGCTATTTTGACAACTCCTCGCGGCATAACTCGACTCATGGACA 701 |||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||| | Sbjct 664 AAAACAGGTTGCAGGAAGCTATTTTGACCACTCCTCGCGGTATTACTCGGCTCATGGATA 723 Query 702 TGCTAATGGATAGAGAGGTAATCCGGAACGAGGCTTTGTTGCTTCTTACGCACTTGACTC 761 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 724 TGCTAATGGATAGAGAGGTAATCCGGAACGAGGCTTTGTTGCTTCTTACGCACTTGACTC 783 Query 762 GTGAAGCAGAGGAGATCCAAAAAATCGTTGTCTTTGAAGGTGCATTTGAAAAGATTTTTA 821 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 784 GTGAAGCAGAGGAGATCCAAAAAATTGTTGTCTTTGAAGGTGCTTTTGAAAAGATTTTTA 843 Query 822 GCATCATTAAGGAAGAAGGGGGGTCAGATGGCGATGTGGTTGTGCAGGACTGTCTGGAGT 881 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 844 GCATCATTAAGGAGGAAGGGGGGTCAGATGGCGATGTGGTTGTGCAGGACTGTCTGGAGT 903 Query 882 TGTTGAACAATCTTCTTCGCAGCAGTTCATCAAACCAGATACTACTAAGGGAGACCATGG 941 ||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| Sbjct 904 TGTTGAACAATCTTCTTCGCAGCAGTTCATCTAACCAGATATTACTAAGGGAAACCATGG 963 Query 942 GTTTTGAACCGATCATTTCAATTCTAAAACTGCGAGGGATTACATATAAGTTCACCAAGC 1001 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 964 GTTTTGAACCTATCATTTCAATTCTAAAACTGCGAGGGATTACATATAAGTTCACCCAGC 1023 Query 1002 AAAAGACTGTTAATCTACTTAGTGCACTGGAGACAATTAATATGCTGATCATGGGAGGTG 1061 |||||||||||||||| ||||||||||||||||| || |||||||||||||||||| ||| Sbjct 1024 AAAAGACTGTTAATCTGCTTAGTGCACTGGAGACCATCAATATGCTGATCATGGGACGTG 1083 Query 1062 CAGACACGGAGCCTGGAAAAGATTCAAACAAGCTGGCAAATAGAACAGTTTTAGTTCAGA 1121 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1084 CAGACACGGAGCCTGGAAAAGATTCAAACAAGCTGGCAAATCGAACAGTTTTAGTTCAGA 1143 Query 1122 AAAAACTGCTAGACCACCTTCTGATGTTAGGTGTTGAAAGCCAATGGGCGCCTGTTGCTG 1181 |||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 1144 AAAAACTGCTAGACTACCTACTGATGTTGGGTGTTGAAAGCCAATGGGCGCCTGTTGCTG 1203 Query 1182 TTCGCTGCATGACATTTAAATGCATTGGAGATCTAATTGATGGACACCCCAAGAACCGTG 1241 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1204 TTCGCTGCATGACATTTAAATGCATTGGAGATCTAATTGATGGACATCCTAAGAACCGTG 1263 Query 1242 ATATCCTTGCTAGCAAAGTTCTTGGTGAAGATCGGCAAGTAGAACCTGCACTCAATTCTA 1301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1264 ATATCCTTGCTAGCAAAGTTCTTGGTGAAGATCGGCAAGTAGAACCTGCACTCAATTCTA 1323 Query 1302 TCCTCAGGATCATTTTACAGACGTCCAATATTCAAGAGTTTGTTGCAGCTGATTACGTTT 1361 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1324 TCCTCCGGATCATTTTACAGACGTCCAGTATTCAAGAGTTTGTTGCAGCTGATTACGTTT 1383 Query 1362 TCAAGACGTTCTGTGAGAAAAATCCCGAGGGTCAAACAATGCTAGCTTCGACTTTAATAC 1421 ||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 1384 TCAAGACATTCTGTGAGAAAAATACTGAGGGTCAAACAATGCTAGCTTCGACTTTAATAC 1443 Query 1422 CTCAACCACATCCCACAGCCCGAGATCCTCTAGAAGATGATGTTCACATGTCATTTGGAA 1481 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 1444 CTCAACCACATCCCACATCCCGAGATCATCTAGAAGATGATGTTCACATGTCATTTGGAA 1503 Query 1482 GTATGTTGTTACGAGGCCTTTGTTCTGGTGAAGCTGATGGTGATCTTGAGACATGTTGCA 1541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1504 GTATGTTGTTACGAGGCCTTTGTTCTGGTGAAGCTGATGGTGATCTTGAGACATGTTGCA 1563 Query 1542 GAGCTGCAAGCATTCTTTTTCATGTTGTGAAGGACAACCTTAAGTGCAAGGAAAAGGCTT 1601 |||||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||||| Sbjct 1564 GAGCTGCAAGCATTCTTTCTCATGTTGTCAAGGACAATCTTCGGTGCAAGGAAAAGGCTT 1623 Query 1602 TGAAAATCGTACTTGAATCACCTATGCCTTCCATGGGAACTCCAGAGCCTCTCTTTCAGA 1661 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 1624 TGAAAATCGTACTTGAATCACCGATGCCGTCCATGGGAACTCCAGAGCCTCTCTTTCAGA 1683 Query 1662 GGATTGTCAGATACCTGGCTGTTGCTTCTTCCATGAAAAGCAAAGATAAATCAAGCACAC 1721 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1684 GGATTGTCAGATACCTGGCTGTTGCTTCTTCCATGAAAAGCAAAGAGAAATCAAGCACAC 1743 Query 1722 TGGGGAAATCATATATTCAACAGATCATTCTAAAACTGCTTGTGACATGGACTGTTGATT 1781 ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 1744 TGGGGAAATCATATATTCAACAGATCATTTTAAAACTGCTGGTGACATGGACTGTTGATT 1803 Query 1782 GTCCGGCTGCAGTTCAGTACTTTTTAGATTCTCGCCACCACCTAACGTTTTTGCTCGAGC 1841 ||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 1804 GTCCGACTGCAGTTCAGTGCTTTTTAGATTCCCGCCACCACCTAACGTTTTTGCTCGAGC 1863 Query 1842 TGGTAACAGACCCAGCTGCAACAGTTTGCATAAGGGGATTGGCGTCTATTCTATTGGGAG 1901 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1864 TGGTAACAGACCCAGCTGCAACAGTTTGCATAAGGGGATTGGCGTCTATTCTATTGGGAG 1923 Query 1902 AATGCGTCATTTACAATAAATCAATTGAGAATGGTAAAGATG-TTTTTGCTGTAGTTGAT 1960 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1924 AATGCGTCATTTACAATAAATCAATTGAGAATGGTAAAGATGCTTTTT-CTGTAGTTGAT 1982 Query 1961 GCTGTGGGCCAGAAGATGGGGCTTACATCATACTTCTCGAATTTTGAAGAGATGCAGAAC 2020 ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||| Sbjct 1983 GCTGTGGGCCAGAAGATGGGGCTGACATCATACTTCTCAAAGTTTGAAGAGATGCAGAAC 2042 Query 2021 AGCTTCATCTTCTCTACCTCCAAGAAACCTCAACAGGGTTATAAACCGTTGACAAGAACA 2080 ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2043 AGCTTCATCTTCTCTCCCTCCAAGAAACCTCCACAGGGTTATAAACCGTTGACAAGAACA 2102 Query 2081 GCCATGCCTAGTGAAGCCGAGATTAATGAGGCGGATGGGGCAGATGAGATGGTTAGAGGG 2140 ||| ||| |||||||||||||||||||||| ||||| || |||||| ||||||| |||| Sbjct 2103 CCCACGCCGAGTGAAGCCGAGATTAATGAGGTGGATGAGGTAGATGAAATGGTTAAAGGG 2162 Query 2141 AATGAGGATCACCCAATGCTCTTGTCTTTGTTTGATGCTAGTTTCATAGGCTTAGTGAAG 2200 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2163 AATGAGGATCACCCAATGCTCTTATCTTTGTTTGATGCTAGTTTCATAGGCTTAGTGAAG 2222 Query 2201 AGCCTGGAAGGCAACATCAGAGAGAGAATAGTGGAGGTGTATAGTCGGCCAAAAAGTGAG 2260 ||| ||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||| Sbjct 2223 AGCTTGGAAGGTAACATCAGAGAAAGAATCGTGGATGTGTATAGTCGGCCAAAAAGTGAG 2282 Query 2261 GTGGCTGTAGTACCAGCAGATTTGGAGCAGAAGAGCGGAGAAACCGAGAAAGACTACATC 2320 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2283 GTGGCTGTAGTACCAGCAGATTTGGAGCAGAAGAGCGGAGAAAATGAGAAAGACTACATC 2342 Query 2321 AACCGCTTGAAAGCCTTTATAGAGAAACAGTGCTCGGAAATTCAGAACCTCCTAGCTCGT 2380 |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct 2343 AACCGCTTGAAAGCCTTTATAGAGAAACAGTGCTCGGAGATTCAGAACCTTCTTGCTCGA 2402 Query 2381 AACGCTGCTTTGGCAGAAGATGTAGCTAGCTCTGGCAGGAATGAGCAATCTCAAGGATCA 2440 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 2403 AACGCTGCTTTGGCAGAAGACGTAGCTAGCTCTGGCAGGAACGAGCAATCTCAAGGATCA 2462 Query 2441 GAGCAAAGAGCAAGTACAGTAATGGACAAGGTTCAGATGGAAAGCATCAGGCGAGAACTT 2500 ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 2463 GAGCAAAGAGCAAGTACAGTAATGGACAAAGTTCAGATGGAAAGCATCAGACGAGAACTC 2522 Query 2501 CAGGAGACATCTCAGCGTTTAGAGACGGTTAAAGCTGAAAAAGTGAAGATCGAATCCGAG 2560 || || |||||||||||||||||||| || || |||||||||| |||||||| || ||| Sbjct 2523 CAAGAAACATCTCAGCGTTTAGAGACAGTGAAGGCTGAAAAAGCCAAGATCGAGTCTGAG 2582 Query 2561 GCATCAAGTTACAAGAACATGGCTGCGAAACTTGAGT-CGGATCTAAAAAGCCTATCGGA 2619 ||||||||| |||||||||||||||| |||||||||| || | ||||||||| ||||||| Sbjct 2583 GCATCAAGTAACAAGAACATGGCTGCAAAACTTGAGTTCG-ACCTAAAAAGCTTATCGGA 2641 Query 2620 TGCATACAACAGTCTCGAACAAGCGAATTACCACCTTGAGCAGGAAGTGAAATCCTTGAA 2679 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 2642 TGCATACAACAGTCTAGAACAGGCGAATTACCATCTTGAGCAGGAAGTGAAATCCTTGAA 2701 Query 2680 AGGAGGAGA-AGGTCCCATGGAGGTTCCTGATATAGAAGCCATTAAGGAAGAAGTGAGAA 2738 ||||||||| || ||||||| || ||||||||||||||||||| |||||||||||||||| Sbjct 2702 AGGAGGAGAGAG-TCCCATGCAGTTTCCTGATATAGAAGCCATCAAGGAAGAAGTGAGAA 2760 Query 2739 AAGAAGCTCAGAAAGAGAGCGAAGATGAATTAAACGACTTGTTAGTATGTTTGGGACAAG 2798 ||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| Sbjct 2761 AAGAAGCTCAGAAAGAGAGCGAAGACGAGTTAAATGACTTGTTAGTATGTTTGGGACAAG 2820 Query 2799 AGGAGAGCAAGGTCGAAAAACTAAGCGCGAAGCTGATAGAATTAGGAGTTGATGTTGATA 2858 |||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2821 AGGAAAGCAAAGTCGAGAAACTAAGCGCGAAGCTGATAGAATTAGGAGTTGATGTTGATA 2880 Query 2859 AGCTTTTAGAGGATATTGGGGACGAATCAGAAGCTCAAGCGGAATCTGAAGAAGACTGAC 2918 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2881 AGCTTTTAGAGGATATTGGAGACGAATCAGAAGCTCAAGCGGAATCTGAAGAAGACTGAC 2940 Query 2919 CATTGAACAAGTAGTAGAGATTTAATGTCCTCTAAAATGCTCTCTTCATCAGGTAATGGA 2978 |||||||||||| |||||||||| || |||||||||||||||||| ||||||| |||||| Sbjct 2941 CATTGAACAAGTTGTAGAGATTTTATATCCTCTAAAATGCTCTCT-CATCAGGGAATGGA 2999 Query 2979 ACTTGTACAGTCCTGGGTGGTTTACTTT-GATGTTTGACAATTCTCGTTGCTTAATCTTT 3037 |||||||||||| |||||| |||| ||| ||| ||||||||||||| ||||||||||||| Sbjct 3000 ACTTGTACAGTCTTGGGTGATTTA-TTTCGATATTTGACAATTCTCTTTGCTTAATCTTT 3058 Query 3038 TAGTTATAACTCTTTAAATTATCTACCAA-CTTCTTAGAGTGCTCGAAACAT 3088 ||||||||||||||||| ||||||||||| ||||||||| |||| ||||||| Sbjct 3059 TAGTTATAACTCTTTAATTTATCTACCAAACTTCTTAGATTGCTTGAAACAT 3110 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 153561012523 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5