BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484544
Length=1754
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27540.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransfer... 2466 0.0
> AT3G27540.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransferase
family protein | chr3:10205308-10207306 FORWARD LENGTH=1772
Length=1772
Score = 2466 bits (1335), Expect = 0.0
Identities = 1641/1783 (92%), Gaps = 43/1783 (2%)
Strand=Plus/Plus
Query 1 CGAGATTCCCATTACTT-TTAATTCCATTCA---ttttttttttCTTTCTTCCACACAGA 56
||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||||
Sbjct 1 CGAGATTCCCATTACTTCTAAATTTCATTCATTCTTTTTTTTTTCTTTCTTCCACACAGA 60
Query 57 TTTTGAGaa--aaaaaaTAAATTTCCTATATCTCCGTTTCTGGG------tttt---ttt 105
|| | || | | | |||| |||||||||||||||||| |||| |||
Sbjct 61 -TTCG-TAACGAGTTCTTCATTTTCATATATCTCCGTTTCTGGGTTTTTTTTTTCCCTTT 118
Query 106 ----tttc--tttttt-ttCTGGGTATTAAATTTTGG-GATTAAACGTTTGCATTAGACG 157
|||| |||||| |||||||| || || ||||| ||| ||||||||||||||||||
Sbjct 119 CAAGTTTCAATTTTTTCTTCTGGGTTTTTAA-TTTGGTGATCAAACGTTTGCATTAGACG 177
Query 158 AATCATGTCCGATGGATACAACAATTCGAAGAAGACAGATGATATTTGTGAAGATGTTTG 217
|||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||
Sbjct 178 AATCATGTCCGATGGATACATCAATTCGAAGAAGACTGATGATATTTGCGAAGATGTTTG 237
Query 218 TGGACAGGGATCAAAAGCAGCAAAAACAATCTCAAGGCTTAAATGTGTTCTTAAAGGTTT 277
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 238 TGGACAGGGATCAAAAGCAGCAAAAACAATCTCAAGGCTAAAATGTGTGCTTAAAGGTTT 297
Query 278 TGACTTAAGAACATACTTGTTTCTCTTTGTGTTGATGCCATTTGGTATCTTAGCAATTTA 337
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 298 TGATTTAAGAACATACTTGTTCCTCTTTGTGTTGATGCCATTTGGTATCTTAGCAATTTA 357
Query 338 TTTACATGGTCAAAAGTTCACTTATTTCTTTAGACCTCTTTGGGAATCACCTCCAAAGCC 397
| |||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 358 TCTACACGGCCAAAAGTTCACTTATTTCTTTAGACCTCTTTGGGAATCACCTCCGAAGCC 417
Query 398 GTTTCAGACCATTCCTCATTACTATAATGAGAATGTAACAATGGAAGCTCTCTGTAGTCT 457
||||| ||||||||||||||||||||||||||||| || |||||| |||||||||||||
Sbjct 418 ATTTCAAACCATTCCTCATTACTATAATGAGAATGTTACTATGGAATCTCTCTGTAGTCT 477
Query 458 TCATGGTTGGGGAACTAGAGAATCACCGAGACGGGTTTTCGACGCGGTTTTGTTTAGTAA 517
|||||||||||||| |||||| || || ||||||||||||||||||||||||||||||||
Sbjct 478 TCATGGTTGGGGAATTAGAGACTCGCCCAGACGGGTTTTCGACGCGGTTTTGTTTAGTAA 537
Query 518 TGAGAAGGATCTTTTAACTGTTAGGTGGAAAGAGCTTTATCCTTATGTGACACAGTTTGT 577
|||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 538 TGAGAAAGATCTTTTAACTGTTAGATGGAATGAGCTTTATCCTTACGTGACACAGTTTGT 597
Query 578 GATTCTTGAATCGAATTCGACGTTTACGGGTTTGCCTAAACCTTTGGTTTTTAAGAGTAA 637
|||||||||||| ||||| |||||||| |||||||||||||| ||||| |||||||||||
Sbjct 598 GATTCTTGAATCTAATTCTACGTTTACTGGTTTGCCTAAACCATTGGTGTTTAAGAGTAA 657
Query 638 TAAGGATCAGTTTAAGTTTGTGGAGCCGCGGCTTACTTATGGGACGATTGGTGGACGGTT 697
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 658 TAAGGATCAGTTTAAGTTTGTGGAGCCGCGGCTAACTTATGGGACGATTGGTGGACGGTT 717
Query 698 TAGGAAAGGCGAGAATCCGTTTGTTGAAGAAGCGTATCAGCGAGTTGCGTTGGATCAGTT 757
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 718 TAGGAAAGGCGAGAATCCGTTTGTCGAAGAAGCGTATCAGCGAGTTGCGTTGGATCAGTT 777
Query 758 GCTTAGAATTGCTGGCATTGAAGAGGATGATTTGTTGATAATGTCGGATGTTGATGAGAT 817
|||||| |||||||| ||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct 778 GCTTAGGATTGCTGGTATTCAAGAAGATGATTTGTTGATAATGTCTGATGTTGATGAGAT 837
Query 818 ACCGAGTGCTCATACGATCAATCTTTTGAGATGGTGCGACGATATTCCTCCAGTTCTTCA 877
|| ||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 838 TCCTAGTGCTCATACTATCAATCTTTTGAGATGGTGTGATGATATTCCTCCAGTTCTTCA 897
Query 878 CCTTCAGCTT-AAGAATTACTTGTATTCTTTCGAATACTATGTCGATAGCAAGAGCTGGA 936
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CCTTCAG-TTGAAGAATTATTTGTATTCTTTCGAATACTATGTCGATAGCAAGAGCTGGA 956
Query 937 GAGCGTCTATACACCGTTACAGTCCAGGGAAAACTCGGTATGCTCATTTCCGTCAGAGCA 996
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 957 GAGCGTCTATACACCGTTACAGTCCAGGGAAAACGCGGTATGCTCATTTCCGTCAGAGTA 1016
Query 997 ATGTTATGTTAGCAGATTCTGGATGGCACTGCAGCTTCTGTTTTCGTTATATAAGCGAGT 1056
||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||
Sbjct 1017 ATGTTATGTTAGCTGATTCTGGATGGCATTGTAGCTTCTGTTTCCGTTATATAAGTGAGT 1076
Query 1057 TTATATTCAAGATGAAAGCTTACAGTCACTCGGACCGTGTCAGATTCTCTCATTACCTGA 1116
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 1077 TTATATTCAAGATGAAAGCTTATAGTCATTCAGACCGTGTCAGATTCTCTCATTACCTGA 1136
Query 1117 ATCCAAGGAGGATTCAAAATGTTATTTGCAAAGGAACTGATTTGTTTGATATGTTACCTG 1176
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 ATCCAAGGAGGATTCAAGATGTTATTTGCAAAGGAACTGATTTGTTTGATATGTTACCTG 1196
Query 1177 AAGAGTACACATTCAAGGAGATTATCGGCAAAATGGGACCTGTACCTCGGTCTTATTCAG 1236
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1197 AAGAATACACATTCAAGGAGATTATAGGCAAAATGGGACCTGTACCTCGGTCTTATTCAG 1256
Query 1237 CGGTTCATCTTCCATCATACCTACTGGATAACGCCGAGCAGTACAAATACTTGTTGCCCG 1296
||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1257 CGGTTCATCTTCCTTCGTACCTACTGTATAACGCCGAGCAGTACAAATACTTGTTGCCTG 1316
Query 1297 GTAATTGCATAAGAGACAAACAGACAGGGTTTATATGATGATCGCATTGAAAGTGTTATT 1356
|||||||||||||||| ||||||||||||||||||||||||| || || |||||||| ||
Sbjct 1317 GTAATTGCATAAGAGAAAAACAGACAGGGTTTATATGATGATTGCTTTTAAAGTGTTCTT 1376
Query 1357 GTATAGTTCTAAGCTTCAGGGCTTTTGCATCATTCTTGAGATAAAAAGAGCAAAATTTTG 1416
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1377 GTATAGTTCTAAGCTTCAGGGCCTTTGCATCATTCTTGAGATAAAAAGAGCAAAATTTTG 1436
Query 1417 CGCAAAAGAGAAGAAATCGAAGAACGTAACGCCATGAAGCGTATATAACCCGATTTCAGC 1476
||| ||||||| || || |||||||||| |||| |||||||||||||||||||| | |
Sbjct 1437 CGCGAAAGAGAGGATATTGAAGAACGTA--GCCAAGAAGCGTATATAACCCGATTGCTG- 1493
Query 1477 GATTTCTTTTG--ATACAGGAGGGTTTGTGAGAACAAAAAGAGCTTACTTTGAGTTA-A- 1532
||| | ||||| |||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1494 GATAT-TTTTGCGATACAGGAGGGTTTGTGAGAACAAAAAGAGCTTACTATGAGTTAGAG 1552
Query 1533 CAGCACGACACTTCCCAGGtttttttAGCAATGGGAAAAAATGTTGTTGCCTAAGGCTGA 1592
|||||| ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1553 CAGCACAACAATTCTCAGGTTTTTTTAACAATGGGAAAAAATGTTGTTGCCTAAGGCTGA 1612
Query 1593 TTTGGTAATGTAGTATAGATGTTTCAGAATCCATTTGTTTATATAACAATTTTCTTCGCG 1652
||||||| ||| || |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1613 TTTGGTA--GTA-TA--GATGTTTCAGTATCCATTTGTTTATATAACAATTTTCTTCGCG 1667
Query 1653 GTTCGTTGTTCTGAGTTTAGTTCTGGTTATATCAGTTACTTGATTATTCTTGTTCAGTTT 1712
||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| ||||
Sbjct 1668 GTTCGTTGTTCTGAGTTTAGTTCTGGTTATA-CAGTTGCTTGATTATTCTTATTCTGTTT 1726
Query 1713 CCATTTATCTATTAA-GTCTTCTTTACTCTGATCATTTTTGAC 1754
||||||||||||||| | ||||||| |||||||||||||||||
Sbjct 1727 CCATTTATCTATTAAAGCCTTCTTTGCTCTGATCATTTTTGAC 1769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86746541760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5